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Genes within 1Mb (chr1:35288399:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -269074 sc-eQTL 3.90e-02 0.43 0.207 0.05 CD4_CTL L2
ENSG00000054116 TRAPPC3 -867654 sc-eQTL 6.86e-01 0.0776 0.192 0.05 CD4_CTL L2
ENSG00000054118 THRAP3 -936033 sc-eQTL 8.02e-01 0.049 0.195 0.05 CD4_CTL L2
ENSG00000092847 AGO1 -581409 sc-eQTL 3.15e-01 0.214 0.212 0.05 CD4_CTL L2
ENSG00000116544 DLGAP3 358749 sc-eQTL 8.82e-01 0.0289 0.194 0.05 CD4_CTL L2
ENSG00000116560 SFPQ 95254 sc-eQTL 3.19e-01 0.139 0.14 0.05 CD4_CTL L2
ENSG00000116863 ADPRHL2 -800493 sc-eQTL 6.53e-01 -0.0938 0.209 0.05 CD4_CTL L2
ENSG00000116871 MAP7D1 -867180 sc-eQTL 1.66e-01 -0.234 0.169 0.05 CD4_CTL L2
ENSG00000126067 PSMB2 -353127 sc-eQTL 6.77e-01 0.0828 0.199 0.05 CD4_CTL L2
ENSG00000126070 AGO3 -642319 sc-eQTL 3.27e-01 0.199 0.203 0.05 CD4_CTL L2
ENSG00000134698 AGO4 -519617 sc-eQTL 8.98e-01 -0.0242 0.188 0.05 CD4_CTL L2
ENSG00000142686 C1orf216 -430495 sc-eQTL 1.99e-01 -0.246 0.191 0.05 CD4_CTL L2
ENSG00000142687 KIAA0319L -269551 sc-eQTL 3.30e-01 -0.207 0.212 0.05 CD4_CTL L2
ENSG00000146463 ZMYM4 19690 sc-eQTL 7.96e-01 -0.0546 0.211 0.05 CD4_CTL L2
ENSG00000163866 SMIM12 428644 sc-eQTL 3.03e-01 0.205 0.198 0.05 CD4_CTL L2
ENSG00000163867 ZMYM6 256454 sc-eQTL 5.96e-02 0.405 0.214 0.05 CD4_CTL L2
ENSG00000197056 ZMYM1 256227 sc-eQTL 6.66e-01 -0.0941 0.217 0.05 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -77678 sc-eQTL 2.92e-01 -0.206 0.195 0.05 CD4_CTL L2
ENSG00000239636 AC004865.2 -289330 sc-eQTL 7.53e-01 -0.0615 0.195 0.05 CD4_CTL L2
ENSG00000243749 TMEM35B 303046 sc-eQTL 5.33e-01 0.103 0.165 0.05 CD4_CTL L2
ENSG00000020129 NCDN -269074 sc-eQTL 7.59e-01 0.0777 0.253 0.052 gdT L2
ENSG00000054116 TRAPPC3 -867654 sc-eQTL 8.10e-01 0.0529 0.22 0.052 gdT L2
ENSG00000054118 THRAP3 -936033 sc-eQTL 1.98e-01 0.329 0.254 0.052 gdT L2
ENSG00000092847 AGO1 -581409 sc-eQTL 2.61e-01 -0.302 0.267 0.052 gdT L2
ENSG00000092853 CLSPN -481579 sc-eQTL 4.11e-01 -0.173 0.21 0.052 gdT L2
ENSG00000116544 DLGAP3 358749 sc-eQTL 7.26e-01 0.0863 0.246 0.052 gdT L2
ENSG00000116560 SFPQ 95254 sc-eQTL 2.52e-01 -0.186 0.161 0.052 gdT L2
ENSG00000116863 ADPRHL2 -800493 sc-eQTL 7.06e-01 0.0935 0.247 0.052 gdT L2
ENSG00000116871 MAP7D1 -867180 sc-eQTL 9.54e-01 0.0122 0.211 0.052 gdT L2
ENSG00000126067 PSMB2 -353127 sc-eQTL 1.48e-01 0.328 0.225 0.052 gdT L2
ENSG00000126070 AGO3 -642319 sc-eQTL 3.24e-01 0.243 0.245 0.052 gdT L2
ENSG00000134698 AGO4 -519617 sc-eQTL 4.13e-01 0.197 0.24 0.052 gdT L2
ENSG00000142686 C1orf216 -430495 sc-eQTL 9.36e-01 0.0197 0.244 0.052 gdT L2
ENSG00000142687 KIAA0319L -269551 sc-eQTL 2.97e-01 -0.256 0.244 0.052 gdT L2
ENSG00000146463 ZMYM4 19690 sc-eQTL 3.82e-01 0.207 0.236 0.052 gdT L2
ENSG00000163866 SMIM12 428644 sc-eQTL 4.86e-01 -0.179 0.256 0.052 gdT L2
ENSG00000163867 ZMYM6 256454 sc-eQTL 2.24e-02 0.602 0.261 0.052 gdT L2
ENSG00000197056 ZMYM1 256227 sc-eQTL 4.95e-01 0.163 0.238 0.052 gdT L2
ENSG00000227409 ZMYM4-AS1 -77678 sc-eQTL 4.14e-01 -0.185 0.226 0.052 gdT L2
ENSG00000239636 AC004865.2 -289330 sc-eQTL 2.85e-01 0.236 0.22 0.052 gdT L2
ENSG00000243749 TMEM35B 303046 sc-eQTL 4.23e-02 -0.38 0.186 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000054116 TRAPPC3 -867654 eQTL 0.00838 0.0637 0.0241 0.0 0.0 0.0535
ENSG00000126067 PSMB2 -353127 eQTL 1.06e-16 -0.203 0.024 0.0 0.0 0.0535
ENSG00000142686 C1orf216 -430495 eQTL 0.0577 0.0737 0.0388 0.00152 0.0 0.0535
ENSG00000163867 ZMYM6 256454 eQTL 0.0491 -0.0602 0.0305 0.0 0.0 0.0535
ENSG00000171812 COL8A2 -836823 eQTL 0.028 -0.107 0.0485 0.0 0.0 0.0535
ENSG00000239636 AC004865.2 -289330 eQTL 0.0005 0.223 0.0637 0.00207 0.00158 0.0535
ENSG00000243749 TMEM35B 303046 eQTL 0.00144 0.11 0.0344 0.0 0.0 0.0535

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000054118 \N -936033 2.74e-07 1.11e-07 4.98e-08 1.81e-07 9.21e-08 1e-07 1.42e-07 5.33e-08 1.41e-07 4.57e-08 1.62e-07 7.88e-08 1.52e-07 7.13e-08 6.04e-08 7.17e-08 3.88e-08 1.21e-07 6.32e-08 4.23e-08 1.13e-07 1.28e-07 1.39e-07 4.16e-08 1.46e-07 1.16e-07 1.06e-07 9.65e-08 1.05e-07 1.07e-07 9.92e-08 3.68e-08 3.16e-08 8.56e-08 8.38e-08 3.93e-08 5.3e-08 9.6e-08 6.71e-08 3.8e-08 3.57e-08 1.33e-07 5.08e-08 1.8e-08 3.42e-08 1.19e-08 1.22e-07 3.8e-09 5.09e-08
ENSG00000126067 PSMB2 -353127 1.3e-06 8.23e-07 3.58e-07 6.35e-07 1.19e-07 4.63e-07 7.22e-07 1.56e-07 8.46e-07 2.85e-07 1.1e-06 4.03e-07 1.96e-06 2.57e-07 4.55e-07 3.57e-07 4.73e-07 5.67e-07 4.7e-07 6.97e-07 2.83e-07 8.58e-07 5.66e-07 2.95e-07 1.85e-06 2.53e-07 5.05e-07 4.98e-07 7.07e-07 9.08e-07 5.48e-07 1.73e-07 1.18e-07 6.83e-07 3.6e-07 2.96e-07 3.79e-07 1.37e-07 3.87e-07 2.99e-08 1.21e-07 1.05e-06 3.34e-07 1.99e-07 1.89e-07 2.14e-07 1.3e-07 5.28e-08 1.05e-07
ENSG00000239636 AC004865.2 -289330 1.29e-06 9.83e-07 2.16e-07 1.3e-06 2.98e-07 6.28e-07 1.38e-06 3.3e-07 1.39e-06 4.44e-07 1.65e-06 5.62e-07 2.6e-06 2.82e-07 5.28e-07 6.89e-07 7.96e-07 7.05e-07 8.36e-07 4.83e-07 6.56e-07 1.6e-06 9.29e-07 5.82e-07 2.21e-06 3.63e-07 8.22e-07 6.88e-07 1.28e-06 1.25e-06 7.64e-07 2.49e-07 2.19e-07 5.59e-07 5.2e-07 4.44e-07 5.93e-07 2.54e-07 5.18e-07 2.66e-07 2.98e-07 1.43e-06 4.6e-07 1.96e-07 1.84e-07 3.63e-07 2.3e-07 1.96e-07 2.87e-07
ENSG00000243749 TMEM35B 303046 1.26e-06 9.39e-07 2.99e-07 1.17e-06 2.69e-07 6.02e-07 1.18e-06 2.65e-07 1.27e-06 4.03e-07 1.39e-06 5.5e-07 2.45e-06 2.92e-07 5.79e-07 6.22e-07 7.78e-07 6.8e-07 8.01e-07 5.97e-07 5.47e-07 1.36e-06 8.1e-07 5.39e-07 2.24e-06 2.99e-07 7.12e-07 7.81e-07 1.23e-06 1.22e-06 6.63e-07 2.78e-07 2.27e-07 5.73e-07 6.24e-07 4.5e-07 5.19e-07 2.04e-07 5.08e-07 2.42e-07 2.86e-07 1.59e-06 4.11e-07 1.81e-07 1.82e-07 2.95e-07 1.88e-07 1.42e-07 2.44e-07