Genes within 1Mb (chr1:34969231:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -588242 sc-eQTL 3.52e-01 0.162 0.173 0.05 NK_HLA L2
ENSG00000092847 AGO1 -900577 sc-eQTL 1.69e-01 -0.236 0.171 0.05 NK_HLA L2
ENSG00000116544 DLGAP3 39581 sc-eQTL 3.25e-01 0.165 0.167 0.05 NK_HLA L2
ENSG00000116560 SFPQ -223914 sc-eQTL 7.82e-01 0.0342 0.123 0.05 NK_HLA L2
ENSG00000126067 PSMB2 -672295 sc-eQTL 1.48e-01 0.263 0.181 0.05 NK_HLA L2
ENSG00000126070 AGO3 -961487 sc-eQTL 2.30e-01 -0.216 0.179 0.05 NK_HLA L2
ENSG00000134698 AGO4 -838785 sc-eQTL 3.07e-01 0.186 0.181 0.05 NK_HLA L2
ENSG00000142686 C1orf216 -749663 sc-eQTL 3.12e-01 -0.177 0.174 0.05 NK_HLA L2
ENSG00000142687 KIAA0319L -588719 sc-eQTL 2.72e-01 -0.196 0.178 0.05 NK_HLA L2
ENSG00000146463 ZMYM4 -299478 sc-eQTL 5.45e-01 0.103 0.169 0.05 NK_HLA L2
ENSG00000163866 SMIM12 109476 sc-eQTL 1.88e-01 0.234 0.177 0.05 NK_HLA L2
ENSG00000163867 ZMYM6 -62714 sc-eQTL 6.41e-01 -0.0867 0.186 0.05 NK_HLA L2
ENSG00000197056 ZMYM1 -62941 sc-eQTL 6.87e-01 0.0707 0.175 0.05 NK_HLA L2
ENSG00000227409 ZMYM4-AS1 -396846 sc-eQTL 5.83e-01 0.0878 0.16 0.05 NK_HLA L2
ENSG00000239636 AC004865.2 -608498 sc-eQTL 1.20e-01 0.283 0.181 0.05 NK_HLA L2
ENSG00000243749 TMEM35B -16122 sc-eQTL 1.97e-01 0.189 0.146 0.05 NK_HLA L2
ENSG00000020129 NCDN -588242 sc-eQTL 2.79e-01 -0.21 0.193 0.054 cDC L2
ENSG00000092847 AGO1 -900577 sc-eQTL 6.83e-01 -0.0784 0.192 0.054 cDC L2
ENSG00000092853 CLSPN -800747 sc-eQTL 1.84e-01 -0.229 0.172 0.054 cDC L2
ENSG00000116544 DLGAP3 39581 sc-eQTL 2.71e-02 0.423 0.19 0.054 cDC L2
ENSG00000116560 SFPQ -223914 sc-eQTL 3.79e-01 0.107 0.122 0.054 cDC L2
ENSG00000126067 PSMB2 -672295 sc-eQTL 5.40e-02 0.314 0.162 0.054 cDC L2
ENSG00000126070 AGO3 -961487 sc-eQTL 5.67e-01 -0.106 0.185 0.054 cDC L2
ENSG00000134698 AGO4 -838785 sc-eQTL 5.81e-01 -0.101 0.182 0.054 cDC L2
ENSG00000142686 C1orf216 -749663 sc-eQTL 5.42e-01 -0.106 0.173 0.054 cDC L2
ENSG00000142687 KIAA0319L -588719 sc-eQTL 5.93e-01 0.101 0.189 0.054 cDC L2
ENSG00000146463 ZMYM4 -299478 sc-eQTL 8.43e-01 -0.0331 0.167 0.054 cDC L2
ENSG00000163866 SMIM12 109476 sc-eQTL 3.62e-01 -0.167 0.182 0.054 cDC L2
ENSG00000163867 ZMYM6 -62714 sc-eQTL 4.83e-02 0.376 0.189 0.054 cDC L2
ENSG00000197056 ZMYM1 -62941 sc-eQTL 8.31e-01 -0.0387 0.181 0.054 cDC L2
ENSG00000227409 ZMYM4-AS1 -396846 sc-eQTL 8.14e-01 0.0424 0.18 0.054 cDC L2
ENSG00000239636 AC004865.2 -608498 sc-eQTL 3.25e-02 0.403 0.187 0.054 cDC L2
ENSG00000243749 TMEM35B -16122 sc-eQTL 6.42e-01 -0.0832 0.179 0.054 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000092853 CLSPN -800747 eQTL 0.0158 0.0671 0.0277 0.00244 0.0 0.053
ENSG00000116560 SFPQ -223914 eQTL 8.28e-05 -0.0979 0.0248 0.00537 0.00309 0.053
ENSG00000116819 TFAP2E -604083 eQTL 0.000886 -0.184 0.0551 0.0 0.0 0.053
ENSG00000142686 C1orf216 -749663 eQTL 0.0179 -0.0957 0.0403 0.0 0.0 0.053
ENSG00000142687 KIAA0319L -588719 eQTL 4.34e-05 -0.104 0.0252 0.0 0.0 0.053
ENSG00000187513 GJA4 176232 eQTL 0.000644 -0.207 0.0604 0.0 0.0 0.053
ENSG00000197056 ZMYM1 -62941 eQTL 0.00224 0.11 0.0358 0.0 0.0 0.053
ENSG00000239636 AC004865.2 -608498 eQTL 3.64e-08 0.365 0.0657 0.0 0.0 0.053
ENSG00000243749 TMEM35B -16122 eQTL 0.00108 0.117 0.0358 0.0 0.0 0.053


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116560 SFPQ -223914 1.27e-06 1.08e-06 3.12e-07 1.14e-06 3.45e-07 6.22e-07 1.55e-06 3.98e-07 1.41e-06 6.23e-07 1.85e-06 7.37e-07 2.41e-06 2.74e-07 5.22e-07 9.42e-07 9.23e-07 7.89e-07 8.67e-07 6.36e-07 7.72e-07 1.72e-06 8.94e-07 5.54e-07 2.31e-06 6.17e-07 9.09e-07 8.37e-07 1.49e-06 1.17e-06 7.32e-07 1.89e-07 2.61e-07 6.89e-07 5.85e-07 4.77e-07 6.08e-07 2.31e-07 3.89e-07 2.65e-07 3.17e-07 1.62e-06 9.66e-08 1.06e-07 2.49e-07 1.19e-07 2.37e-07 5.35e-08 1.68e-07
ENSG00000142687 KIAA0319L -588719 3.07e-07 1.51e-07 5.93e-08 2.15e-07 1.02e-07 8.37e-08 1.99e-07 5.68e-08 1.54e-07 8.53e-08 1.61e-07 1.2e-07 2.05e-07 8e-08 5.94e-08 8.08e-08 4.45e-08 1.77e-07 7.09e-08 5.07e-08 1.22e-07 1.42e-07 1.58e-07 3.49e-08 2.02e-07 1.31e-07 1.17e-07 1.1e-07 1.31e-07 1.17e-07 1.14e-07 3.78e-08 3.21e-08 9.78e-08 2.97e-08 2.68e-08 4.28e-08 8.51e-08 6.67e-08 3.6e-08 4.69e-08 1.6e-07 4.83e-08 7.18e-09 3.32e-08 1.71e-08 8.74e-08 1.96e-09 4.91e-08
ENSG00000197056 ZMYM1 -62941 6.15e-06 7.94e-06 8.44e-07 3.6e-06 1.76e-06 2.51e-06 9.09e-06 1.25e-06 5.25e-06 3.77e-06 9.01e-06 3.23e-06 1.12e-05 2.9e-06 1.21e-06 4.63e-06 3.61e-06 3.84e-06 2.2e-06 2.02e-06 3.12e-06 7.4e-06 5.5e-06 2.06e-06 9.69e-06 2.21e-06 3.25e-06 2.36e-06 6.89e-06 7.75e-06 3.71e-06 4.69e-07 7.05e-07 2.6e-06 2.3e-06 2.03e-06 1.2e-06 6.96e-07 1.29e-06 7.33e-07 7.18e-07 8.32e-06 6.74e-07 1.68e-07 7.73e-07 9.29e-07 1.03e-06 7.24e-07 6.22e-07
ENSG00000239636 AC004865.2 -608498 3.02e-07 1.53e-07 5.72e-08 2.07e-07 9.82e-08 8.45e-08 1.9e-07 5.62e-08 1.44e-07 7.6e-08 1.63e-07 1.15e-07 1.87e-07 8.13e-08 5.82e-08 7.89e-08 4.31e-08 1.64e-07 7.12e-08 5.04e-08 1.22e-07 1.39e-07 1.62e-07 3.07e-08 1.98e-07 1.31e-07 1.17e-07 1.04e-07 1.34e-07 1.05e-07 1.09e-07 3.6e-08 3.68e-08 9.52e-08 3.81e-08 3.22e-08 4.62e-08 8.89e-08 6.71e-08 3.67e-08 5.42e-08 1.59e-07 4.87e-08 1.07e-08 2.64e-08 1.65e-08 9.29e-08 1.93e-09 4.85e-08
ENSG00000243749 TMEM35B -16122 1.53e-05 1.9e-05 3.64e-06 1.11e-05 3.23e-06 8.91e-06 2.58e-05 3.29e-06 1.76e-05 9.15e-06 2.28e-05 8.6e-06 3.35e-05 7.85e-06 5.19e-06 1.04e-05 9.88e-06 1.52e-05 6e-06 4.75e-06 8.63e-06 1.84e-05 1.81e-05 6.4e-06 2.96e-05 5.5e-06 8.01e-06 8.05e-06 2.1e-05 2.17e-05 1.24e-05 1.47e-06 2.11e-06 5.42e-06 7.96e-06 4.56e-06 2.36e-06 2.74e-06 3.56e-06 2.86e-06 1.67e-06 2.24e-05 2.54e-06 3.43e-07 1.93e-06 2.77e-06 2.94e-06 1.35e-06 1.19e-06