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Genes within 1Mb (chr1:34805126:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -752347 sc-eQTL 8.62e-01 0.0339 0.194 0.052 CD4_CTL L2
ENSG00000116544 DLGAP3 -124524 sc-eQTL 5.15e-01 0.117 0.18 0.052 CD4_CTL L2
ENSG00000116560 SFPQ -388019 sc-eQTL 6.02e-01 0.0677 0.13 0.052 CD4_CTL L2
ENSG00000126067 PSMB2 -836400 sc-eQTL 1.08e-01 -0.296 0.183 0.052 CD4_CTL L2
ENSG00000142686 C1orf216 -913768 sc-eQTL 4.87e-01 0.124 0.178 0.052 CD4_CTL L2
ENSG00000142687 KIAA0319L -752824 sc-eQTL 9.01e-01 0.0247 0.198 0.052 CD4_CTL L2
ENSG00000146463 ZMYM4 -463583 sc-eQTL 6.00e-01 0.103 0.196 0.052 CD4_CTL L2
ENSG00000163866 SMIM12 -54629 sc-eQTL 1.94e-02 0.429 0.182 0.052 CD4_CTL L2
ENSG00000163867 ZMYM6 -226819 sc-eQTL 6.88e-01 0.0804 0.2 0.052 CD4_CTL L2
ENSG00000197056 ZMYM1 -227046 sc-eQTL 5.86e-01 0.11 0.202 0.052 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -560951 sc-eQTL 3.59e-01 -0.167 0.181 0.052 CD4_CTL L2
ENSG00000239636 AC004865.2 -772603 sc-eQTL 7.28e-01 -0.0631 0.181 0.052 CD4_CTL L2
ENSG00000243749 TMEM35B -180227 sc-eQTL 9.58e-01 0.00801 0.153 0.052 CD4_CTL L2
ENSG00000020129 NCDN -752347 sc-eQTL 1.43e-01 -0.297 0.202 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 -124524 sc-eQTL 3.44e-01 0.189 0.199 0.051 CD8_TCM L2
ENSG00000116560 SFPQ -388019 sc-eQTL 7.68e-01 0.0334 0.113 0.051 CD8_TCM L2
ENSG00000126067 PSMB2 -836400 sc-eQTL 8.93e-01 -0.0255 0.19 0.051 CD8_TCM L2
ENSG00000142686 C1orf216 -913768 sc-eQTL 7.92e-01 0.0497 0.189 0.051 CD8_TCM L2
ENSG00000142687 KIAA0319L -752824 sc-eQTL 1.02e-01 0.298 0.182 0.051 CD8_TCM L2
ENSG00000146463 ZMYM4 -463583 sc-eQTL 3.00e-01 0.203 0.195 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 -54629 sc-eQTL 9.63e-02 -0.322 0.193 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 -226819 sc-eQTL 9.29e-01 0.019 0.212 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 -227046 sc-eQTL 5.37e-01 0.12 0.194 0.051 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -560951 sc-eQTL 6.45e-01 0.0848 0.184 0.051 CD8_TCM L2
ENSG00000239636 AC004865.2 -772603 sc-eQTL 8.36e-01 -0.0399 0.192 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B -180227 sc-eQTL 5.07e-01 0.104 0.156 0.051 CD8_TCM L2
ENSG00000020129 NCDN -752347 sc-eQTL 1.12e-01 -0.34 0.213 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 -124524 sc-eQTL 8.55e-01 0.0341 0.187 0.05 CD8_TEM L2
ENSG00000116560 SFPQ -388019 sc-eQTL 4.64e-01 -0.0871 0.119 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 -836400 sc-eQTL 1.98e-01 -0.236 0.183 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 -913768 sc-eQTL 4.50e-01 0.144 0.19 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -752824 sc-eQTL 9.97e-01 -0.00068 0.202 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 -463583 sc-eQTL 1.95e-02 0.487 0.207 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 -54629 sc-eQTL 4.11e-01 -0.171 0.207 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 -226819 sc-eQTL 3.59e-02 0.432 0.204 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 -227046 sc-eQTL 9.30e-01 -0.0169 0.193 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -560951 sc-eQTL 2.82e-01 0.201 0.186 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -772603 sc-eQTL 1.90e-01 -0.258 0.196 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B -180227 sc-eQTL 4.19e-01 0.12 0.148 0.05 CD8_TEM L2
ENSG00000020129 NCDN -752347 sc-eQTL 6.41e-01 -0.0927 0.199 0.051 cDC L2
ENSG00000092853 CLSPN -964852 sc-eQTL 4.75e-01 0.126 0.176 0.051 cDC L2
ENSG00000116544 DLGAP3 -124524 sc-eQTL 4.92e-01 -0.135 0.197 0.051 cDC L2
ENSG00000116560 SFPQ -388019 sc-eQTL 9.61e-02 -0.207 0.124 0.051 cDC L2
ENSG00000126067 PSMB2 -836400 sc-eQTL 1.38e-02 -0.409 0.165 0.051 cDC L2
ENSG00000142686 C1orf216 -913768 sc-eQTL 6.35e-01 -0.0844 0.178 0.051 cDC L2
ENSG00000142687 KIAA0319L -752824 sc-eQTL 1.57e-01 -0.273 0.192 0.051 cDC L2
ENSG00000146463 ZMYM4 -463583 sc-eQTL 1.14e-01 -0.27 0.17 0.051 cDC L2
ENSG00000163866 SMIM12 -54629 sc-eQTL 4.65e-01 0.137 0.187 0.051 cDC L2
ENSG00000163867 ZMYM6 -226819 sc-eQTL 5.28e-01 0.124 0.196 0.051 cDC L2
ENSG00000197056 ZMYM1 -227046 sc-eQTL 4.11e-01 0.152 0.185 0.051 cDC L2
ENSG00000227409 ZMYM4-AS1 -560951 sc-eQTL 1.16e-01 0.29 0.183 0.051 cDC L2
ENSG00000239636 AC004865.2 -772603 sc-eQTL 5.13e-01 -0.127 0.194 0.051 cDC L2
ENSG00000243749 TMEM35B -180227 sc-eQTL 7.51e-01 0.0584 0.183 0.051 cDC L2
ENSG00000020129 NCDN -752347 sc-eQTL 9.03e-01 -0.0269 0.219 0.058 gdT L2
ENSG00000092853 CLSPN -964852 sc-eQTL 6.30e-02 0.338 0.18 0.058 gdT L2
ENSG00000116544 DLGAP3 -124524 sc-eQTL 1.66e-01 -0.295 0.212 0.058 gdT L2
ENSG00000116560 SFPQ -388019 sc-eQTL 5.72e-01 -0.0796 0.14 0.058 gdT L2
ENSG00000126067 PSMB2 -836400 sc-eQTL 8.79e-01 0.0301 0.197 0.058 gdT L2
ENSG00000142686 C1orf216 -913768 sc-eQTL 6.27e-01 0.103 0.212 0.058 gdT L2
ENSG00000142687 KIAA0319L -752824 sc-eQTL 7.58e-01 -0.0658 0.213 0.058 gdT L2
ENSG00000146463 ZMYM4 -463583 sc-eQTL 9.26e-01 0.0192 0.205 0.058 gdT L2
ENSG00000163866 SMIM12 -54629 sc-eQTL 5.69e-01 -0.127 0.222 0.058 gdT L2
ENSG00000163867 ZMYM6 -226819 sc-eQTL 6.01e-01 -0.121 0.23 0.058 gdT L2
ENSG00000197056 ZMYM1 -227046 sc-eQTL 6.16e-01 0.104 0.207 0.058 gdT L2
ENSG00000227409 ZMYM4-AS1 -560951 sc-eQTL 7.54e-01 0.0616 0.196 0.058 gdT L2
ENSG00000239636 AC004865.2 -772603 sc-eQTL 9.32e-01 -0.0164 0.191 0.058 gdT L2
ENSG00000243749 TMEM35B -180227 sc-eQTL 3.16e-01 -0.164 0.163 0.058 gdT L2
ENSG00000020129 NCDN -752347 sc-eQTL 2.59e-01 0.221 0.195 0.051 intMono L2
ENSG00000116544 DLGAP3 -124524 sc-eQTL 2.04e-01 -0.245 0.192 0.051 intMono L2
ENSG00000116560 SFPQ -388019 sc-eQTL 6.59e-01 -0.0654 0.148 0.051 intMono L2
ENSG00000126067 PSMB2 -836400 sc-eQTL 5.73e-01 0.0806 0.143 0.051 intMono L2
ENSG00000142686 C1orf216 -913768 sc-eQTL 9.37e-01 0.0151 0.19 0.051 intMono L2
ENSG00000142687 KIAA0319L -752824 sc-eQTL 1.38e-01 -0.283 0.19 0.051 intMono L2
ENSG00000146463 ZMYM4 -463583 sc-eQTL 9.99e-01 0.000289 0.188 0.051 intMono L2
ENSG00000163866 SMIM12 -54629 sc-eQTL 6.97e-01 0.0771 0.198 0.051 intMono L2
ENSG00000163867 ZMYM6 -226819 sc-eQTL 1.99e-01 -0.261 0.203 0.051 intMono L2
ENSG00000197056 ZMYM1 -227046 sc-eQTL 6.77e-01 -0.0748 0.179 0.051 intMono L2
ENSG00000227409 ZMYM4-AS1 -560951 sc-eQTL 9.13e-02 0.31 0.182 0.051 intMono L2
ENSG00000239636 AC004865.2 -772603 sc-eQTL 5.48e-01 0.116 0.193 0.051 intMono L2
ENSG00000243749 TMEM35B -180227 sc-eQTL 2.68e-01 0.193 0.174 0.051 intMono L2
ENSG00000020129 NCDN -752347 sc-eQTL 5.50e-01 0.12 0.2 0.056 pDC L2
ENSG00000092853 CLSPN -964852 sc-eQTL 5.26e-01 0.0946 0.149 0.056 pDC L2
ENSG00000116544 DLGAP3 -124524 sc-eQTL 6.32e-01 0.0942 0.196 0.056 pDC L2
ENSG00000116560 SFPQ -388019 sc-eQTL 1.08e-01 0.207 0.128 0.056 pDC L2
ENSG00000126067 PSMB2 -836400 sc-eQTL 9.37e-01 0.0139 0.176 0.056 pDC L2
ENSG00000142686 C1orf216 -913768 sc-eQTL 9.34e-01 0.0131 0.159 0.056 pDC L2
ENSG00000142687 KIAA0319L -752824 sc-eQTL 6.44e-01 -0.101 0.217 0.056 pDC L2
ENSG00000146463 ZMYM4 -463583 sc-eQTL 6.14e-01 0.0991 0.196 0.056 pDC L2
ENSG00000163866 SMIM12 -54629 sc-eQTL 2.02e-01 0.261 0.204 0.056 pDC L2
ENSG00000163867 ZMYM6 -226819 sc-eQTL 7.92e-01 0.0482 0.183 0.056 pDC L2
ENSG00000197056 ZMYM1 -227046 sc-eQTL 4.00e-01 0.159 0.189 0.056 pDC L2
ENSG00000227409 ZMYM4-AS1 -560951 sc-eQTL 4.58e-01 0.141 0.19 0.056 pDC L2
ENSG00000239636 AC004865.2 -772603 sc-eQTL 2.10e-01 0.257 0.204 0.056 pDC L2
ENSG00000243749 TMEM35B -180227 sc-eQTL 3.49e-01 -0.157 0.167 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000142686 C1orf216 -913768 eQTL 0.292 0.0425 0.0402 0.00188 0.0 0.05
ENSG00000187513 GJA4 12127 eQTL 0.0174 0.144 0.0603 0.0 0.0 0.05
ENSG00000189280 GJB5 50079 eQTL 0.0281 0.186 0.0847 0.0 0.0 0.05
ENSG00000243749 TMEM35B -180227 eQTL 0.0197 -0.0835 0.0357 0.0 0.0 0.05

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000187513 GJA4 12127 1.95e-05 2.87e-05 4.24e-06 1.35e-05 3.15e-06 8.94e-06 3.16e-05 3.5e-06 2.08e-05 1.02e-05 2.86e-05 9.35e-06 4.02e-05 9.38e-06 5.36e-06 1.18e-05 1.07e-05 1.71e-05 6.02e-06 4.81e-06 9.08e-06 2.28e-05 2.22e-05 5.74e-06 3.35e-05 5.51e-06 8.97e-06 8.42e-06 2.47e-05 1.93e-05 1.39e-05 1.34e-06 1.56e-06 5.08e-06 8.71e-06 4.4e-06 1.85e-06 2.68e-06 3.46e-06 2.36e-06 1.12e-06 3.25e-05 2.54e-06 2.85e-07 1.48e-06 2.7e-06 3e-06 1.17e-06 1.28e-06