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Genes within 1Mb (chr1:34801857:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -755616 sc-eQTL 7.33e-01 -0.0679 0.199 0.95 NK_HLA L2
ENSG00000116544 DLGAP3 -127793 sc-eQTL 8.10e-01 -0.046 0.191 0.95 NK_HLA L2
ENSG00000116560 SFPQ -391288 sc-eQTL 9.53e-01 0.0084 0.141 0.95 NK_HLA L2
ENSG00000126067 PSMB2 -839669 sc-eQTL 4.80e-01 -0.147 0.208 0.95 NK_HLA L2
ENSG00000142686 C1orf216 -917037 sc-eQTL 2.71e-01 0.221 0.2 0.95 NK_HLA L2
ENSG00000142687 KIAA0319L -756093 sc-eQTL 3.64e-01 -0.186 0.204 0.95 NK_HLA L2
ENSG00000146463 ZMYM4 -466852 sc-eQTL 6.09e-01 0.0994 0.194 0.95 NK_HLA L2
ENSG00000163866 SMIM12 -57898 sc-eQTL 9.55e-02 0.339 0.202 0.95 NK_HLA L2
ENSG00000163867 ZMYM6 -230088 sc-eQTL 2.03e-01 0.27 0.212 0.95 NK_HLA L2
ENSG00000197056 ZMYM1 -230315 sc-eQTL 7.35e-01 -0.0678 0.2 0.95 NK_HLA L2
ENSG00000227409 ZMYM4-AS1 -564220 sc-eQTL 5.82e-01 -0.101 0.183 0.95 NK_HLA L2
ENSG00000239636 AC004865.2 -775872 sc-eQTL 6.43e-01 0.0967 0.209 0.95 NK_HLA L2
ENSG00000243749 TMEM35B -183496 sc-eQTL 5.05e-02 -0.327 0.166 0.95 NK_HLA L2
ENSG00000020129 NCDN -755616 sc-eQTL 8.96e-01 0.0278 0.212 0.949 cDC L2
ENSG00000092853 CLSPN -968121 sc-eQTL 5.20e-01 0.121 0.188 0.949 cDC L2
ENSG00000116544 DLGAP3 -127793 sc-eQTL 2.44e-01 -0.245 0.209 0.949 cDC L2
ENSG00000116560 SFPQ -391288 sc-eQTL 5.95e-01 0.0708 0.133 0.949 cDC L2
ENSG00000126067 PSMB2 -839669 sc-eQTL 1.22e-01 0.275 0.177 0.949 cDC L2
ENSG00000142686 C1orf216 -917037 sc-eQTL 5.81e-01 -0.104 0.189 0.949 cDC L2
ENSG00000142687 KIAA0319L -756093 sc-eQTL 1.56e-01 0.292 0.205 0.949 cDC L2
ENSG00000146463 ZMYM4 -466852 sc-eQTL 4.26e-01 -0.145 0.182 0.949 cDC L2
ENSG00000163866 SMIM12 -57898 sc-eQTL 2.78e-01 0.216 0.198 0.949 cDC L2
ENSG00000163867 ZMYM6 -230088 sc-eQTL 5.97e-01 0.11 0.208 0.949 cDC L2
ENSG00000197056 ZMYM1 -230315 sc-eQTL 5.84e-02 -0.372 0.195 0.949 cDC L2
ENSG00000227409 ZMYM4-AS1 -564220 sc-eQTL 3.54e-01 -0.182 0.196 0.949 cDC L2
ENSG00000239636 AC004865.2 -775872 sc-eQTL 9.50e-01 0.0128 0.207 0.949 cDC L2
ENSG00000243749 TMEM35B -183496 sc-eQTL 7.99e-01 -0.0499 0.195 0.949 cDC L2
ENSG00000020129 NCDN -755616 sc-eQTL 8.35e-01 0.0469 0.225 0.949 pDC L2
ENSG00000092853 CLSPN -968121 sc-eQTL 5.77e-01 -0.0932 0.167 0.949 pDC L2
ENSG00000116544 DLGAP3 -127793 sc-eQTL 4.33e-01 -0.173 0.22 0.949 pDC L2
ENSG00000116560 SFPQ -391288 sc-eQTL 3.59e-01 -0.133 0.144 0.949 pDC L2
ENSG00000126067 PSMB2 -839669 sc-eQTL 7.50e-01 -0.0629 0.197 0.949 pDC L2
ENSG00000142686 C1orf216 -917037 sc-eQTL 6.06e-01 -0.0918 0.178 0.949 pDC L2
ENSG00000142687 KIAA0319L -756093 sc-eQTL 5.36e-01 -0.151 0.243 0.949 pDC L2
ENSG00000146463 ZMYM4 -466852 sc-eQTL 1.57e-01 -0.311 0.219 0.949 pDC L2
ENSG00000163866 SMIM12 -57898 sc-eQTL 2.10e-01 0.288 0.228 0.949 pDC L2
ENSG00000163867 ZMYM6 -230088 sc-eQTL 9.74e-01 -0.0068 0.205 0.949 pDC L2
ENSG00000197056 ZMYM1 -230315 sc-eQTL 1.08e-01 -0.34 0.21 0.949 pDC L2
ENSG00000227409 ZMYM4-AS1 -564220 sc-eQTL 6.88e-01 0.0856 0.213 0.949 pDC L2
ENSG00000239636 AC004865.2 -775872 sc-eQTL 2.89e-01 -0.243 0.229 0.949 pDC L2
ENSG00000243749 TMEM35B -183496 sc-eQTL 2.72e-01 0.206 0.187 0.949 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000187513 GJA4 8858 eQTL 7.4e-06 -0.351 0.078 0.00132 0.0 0.0265
ENSG00000189280 GJB5 46810 eQTL 0.00105 -0.361 0.11 0.0 0.0 0.0265
ENSG00000230163 AL122010.1 -48837 eQTL 0.033 -0.198 0.0928 0.00156 0.0 0.0265

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000163866 \N -57898 8.82e-06 1.18e-05 1.35e-06 6.07e-06 2.19e-06 4.24e-06 1.07e-05 1.81e-06 9.51e-06 4.98e-06 1.28e-05 5.25e-06 1.62e-05 3.74e-06 2.72e-06 6.48e-06 4.11e-06 6.85e-06 2.62e-06 2.91e-06 4.64e-06 9.61e-06 7.98e-06 3.03e-06 1.43e-05 3.24e-06 4.7e-06 3.69e-06 9.77e-06 8.53e-06 5.9e-06 5.57e-07 9.96e-07 2.76e-06 4.27e-06 2.09e-06 1.39e-06 1.97e-06 1.36e-06 1e-06 7.69e-07 1.31e-05 1.32e-06 1.61e-07 6.85e-07 1.62e-06 1.16e-06 6.26e-07 4.77e-07
ENSG00000187513 GJA4 8858 2.73e-05 2.99e-05 5.07e-06 1.42e-05 4.22e-06 1.2e-05 3.71e-05 3.8e-06 2.46e-05 1.25e-05 3.3e-05 1.31e-05 4.26e-05 1.16e-05 6.2e-06 1.48e-05 1.36e-05 2.05e-05 6.96e-06 5.52e-06 1.19e-05 2.64e-05 2.63e-05 7.51e-06 3.7e-05 6.17e-06 1.12e-05 1.04e-05 2.71e-05 2.19e-05 1.69e-05 1.65e-06 2.24e-06 5.98e-06 9.74e-06 4.68e-06 2.54e-06 2.99e-06 3.71e-06 2.99e-06 1.62e-06 3.4e-05 2.83e-06 2.81e-07 2.03e-06 3.29e-06 3.67e-06 1.52e-06 1.46e-06
ENSG00000189280 GJB5 46810 1e-05 1.27e-05 1.61e-06 6.9e-06 2.38e-06 4.75e-06 1.19e-05 2.13e-06 1.05e-05 5.61e-06 1.5e-05 5.76e-06 1.93e-05 3.9e-06 3.4e-06 6.51e-06 5.17e-06 7.88e-06 2.89e-06 2.81e-06 5.55e-06 1.07e-05 9.94e-06 3.38e-06 1.75e-05 3.86e-06 5.79e-06 4.58e-06 1.16e-05 9.87e-06 7.4e-06 8.91e-07 1.25e-06 3.01e-06 4.81e-06 2.59e-06 1.71e-06 1.91e-06 1.59e-06 1.04e-06 8.36e-07 1.57e-05 1.39e-06 1.79e-07 7.07e-07 1.82e-06 1.4e-06 7.34e-07 4.39e-07