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Genes within 1Mb (chr1:34774193:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -783280 sc-eQTL 5.16e-01 -0.139 0.213 0.052 DC L1
ENSG00000092853 CLSPN -995785 sc-eQTL 3.70e-01 -0.174 0.194 0.052 DC L1
ENSG00000116544 DLGAP3 -155457 sc-eQTL 2.18e-01 0.243 0.197 0.052 DC L1
ENSG00000116560 SFPQ -418952 sc-eQTL 1.15e-01 0.194 0.122 0.052 DC L1
ENSG00000126067 PSMB2 -867333 sc-eQTL 3.25e-01 -0.159 0.161 0.052 DC L1
ENSG00000142686 C1orf216 -944701 sc-eQTL 3.58e-01 -0.178 0.193 0.052 DC L1
ENSG00000142687 KIAA0319L -783757 sc-eQTL 1.72e-01 0.282 0.206 0.052 DC L1
ENSG00000146463 ZMYM4 -494516 sc-eQTL 8.02e-01 -0.0458 0.183 0.052 DC L1
ENSG00000163866 SMIM12 -85562 sc-eQTL 1.37e-02 0.478 0.192 0.052 DC L1
ENSG00000163867 ZMYM6 -257752 sc-eQTL 3.78e-01 -0.163 0.185 0.052 DC L1
ENSG00000197056 ZMYM1 -257979 sc-eQTL 2.72e-01 0.221 0.2 0.052 DC L1
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 2.69e-01 0.233 0.21 0.052 DC L1
ENSG00000239636 AC004865.2 -803536 sc-eQTL 9.30e-01 0.0182 0.208 0.052 DC L1
ENSG00000243749 TMEM35B -211160 sc-eQTL 4.05e-01 -0.148 0.177 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -783280 sc-eQTL 8.86e-01 0.0291 0.202 0.054 B_Activated L2
ENSG00000116544 DLGAP3 -155457 sc-eQTL 5.03e-01 0.122 0.181 0.054 B_Activated L2
ENSG00000116560 SFPQ -418952 sc-eQTL 1.09e-01 0.225 0.139 0.054 B_Activated L2
ENSG00000126067 PSMB2 -867333 sc-eQTL 1.07e-01 0.354 0.219 0.054 B_Activated L2
ENSG00000142686 C1orf216 -944701 sc-eQTL 2.89e-01 -0.206 0.194 0.054 B_Activated L2
ENSG00000142687 KIAA0319L -783757 sc-eQTL 2.41e-02 0.514 0.226 0.054 B_Activated L2
ENSG00000146463 ZMYM4 -494516 sc-eQTL 9.76e-01 0.00705 0.235 0.054 B_Activated L2
ENSG00000163866 SMIM12 -85562 sc-eQTL 1.11e-01 -0.377 0.235 0.054 B_Activated L2
ENSG00000163867 ZMYM6 -257752 sc-eQTL 5.49e-01 0.141 0.235 0.054 B_Activated L2
ENSG00000197056 ZMYM1 -257979 sc-eQTL 1.27e-01 -0.299 0.195 0.054 B_Activated L2
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 9.53e-01 -0.0116 0.196 0.054 B_Activated L2
ENSG00000239636 AC004865.2 -803536 sc-eQTL 2.96e-01 -0.236 0.225 0.054 B_Activated L2
ENSG00000243749 TMEM35B -211160 sc-eQTL 3.92e-01 0.166 0.194 0.054 B_Activated L2
ENSG00000020129 NCDN -783280 sc-eQTL 5.66e-02 0.409 0.213 0.05 CD4_CTL L2
ENSG00000116544 DLGAP3 -155457 sc-eQTL 6.44e-01 -0.0924 0.199 0.05 CD4_CTL L2
ENSG00000116560 SFPQ -418952 sc-eQTL 3.72e-01 -0.128 0.143 0.05 CD4_CTL L2
ENSG00000126067 PSMB2 -867333 sc-eQTL 8.08e-01 -0.0498 0.204 0.05 CD4_CTL L2
ENSG00000142686 C1orf216 -944701 sc-eQTL 2.47e-01 0.228 0.197 0.05 CD4_CTL L2
ENSG00000142687 KIAA0319L -783757 sc-eQTL 6.98e-01 0.085 0.219 0.05 CD4_CTL L2
ENSG00000146463 ZMYM4 -494516 sc-eQTL 7.76e-01 0.0616 0.217 0.05 CD4_CTL L2
ENSG00000163866 SMIM12 -85562 sc-eQTL 3.42e-01 -0.194 0.204 0.05 CD4_CTL L2
ENSG00000163867 ZMYM6 -257752 sc-eQTL 6.71e-01 -0.0942 0.221 0.05 CD4_CTL L2
ENSG00000197056 ZMYM1 -257979 sc-eQTL 2.54e-01 0.255 0.223 0.05 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 7.37e-01 0.0675 0.201 0.05 CD4_CTL L2
ENSG00000239636 AC004865.2 -803536 sc-eQTL 5.65e-01 -0.115 0.2 0.05 CD4_CTL L2
ENSG00000243749 TMEM35B -211160 sc-eQTL 7.80e-01 -0.0475 0.17 0.05 CD4_CTL L2
ENSG00000020129 NCDN -783280 sc-eQTL 2.97e-01 0.227 0.217 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 -155457 sc-eQTL 8.02e-01 -0.0536 0.213 0.051 CD8_TCM L2
ENSG00000116560 SFPQ -418952 sc-eQTL 9.58e-01 -0.00633 0.121 0.051 CD8_TCM L2
ENSG00000126067 PSMB2 -867333 sc-eQTL 1.61e-02 -0.488 0.201 0.051 CD8_TCM L2
ENSG00000142686 C1orf216 -944701 sc-eQTL 6.55e-01 -0.0903 0.202 0.051 CD8_TCM L2
ENSG00000142687 KIAA0319L -783757 sc-eQTL 5.40e-01 0.12 0.195 0.051 CD8_TCM L2
ENSG00000146463 ZMYM4 -494516 sc-eQTL 8.05e-01 -0.0518 0.209 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 -85562 sc-eQTL 2.61e-01 -0.234 0.207 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 -257752 sc-eQTL 8.11e-01 0.0545 0.227 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 -257979 sc-eQTL 5.91e-01 0.112 0.208 0.051 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 6.56e-01 -0.0878 0.197 0.051 CD8_TCM L2
ENSG00000239636 AC004865.2 -803536 sc-eQTL 3.52e-01 -0.192 0.205 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B -211160 sc-eQTL 8.81e-01 0.0251 0.168 0.051 CD8_TCM L2
ENSG00000020129 NCDN -783280 sc-eQTL 2.97e-01 -0.235 0.224 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 -155457 sc-eQTL 9.13e-01 0.0215 0.196 0.05 CD8_TEM L2
ENSG00000116560 SFPQ -418952 sc-eQTL 3.74e-01 -0.111 0.124 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 -867333 sc-eQTL 9.29e-01 0.0173 0.193 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 -944701 sc-eQTL 1.45e-01 -0.291 0.199 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -783757 sc-eQTL 7.07e-01 -0.0799 0.212 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 -494516 sc-eQTL 6.27e-01 -0.107 0.22 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 -85562 sc-eQTL 5.17e-01 0.141 0.218 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 -257752 sc-eQTL 3.59e-01 0.199 0.217 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 -257979 sc-eQTL 3.09e-01 -0.206 0.202 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 8.80e-01 0.0295 0.196 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -803536 sc-eQTL 8.00e-01 -0.0524 0.207 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B -211160 sc-eQTL 8.01e-01 0.0392 0.155 0.05 CD8_TEM L2
ENSG00000020129 NCDN -783280 sc-eQTL 4.61e-01 -0.153 0.207 0.05 NK_HLA L2
ENSG00000116544 DLGAP3 -155457 sc-eQTL 6.26e-01 0.0972 0.199 0.05 NK_HLA L2
ENSG00000116560 SFPQ -418952 sc-eQTL 9.60e-01 0.00745 0.147 0.05 NK_HLA L2
ENSG00000126067 PSMB2 -867333 sc-eQTL 5.08e-01 0.144 0.217 0.05 NK_HLA L2
ENSG00000142686 C1orf216 -944701 sc-eQTL 8.80e-01 0.0314 0.209 0.05 NK_HLA L2
ENSG00000142687 KIAA0319L -783757 sc-eQTL 7.49e-01 0.0683 0.213 0.05 NK_HLA L2
ENSG00000146463 ZMYM4 -494516 sc-eQTL 5.64e-01 -0.117 0.202 0.05 NK_HLA L2
ENSG00000163866 SMIM12 -85562 sc-eQTL 3.71e-01 -0.19 0.212 0.05 NK_HLA L2
ENSG00000163867 ZMYM6 -257752 sc-eQTL 8.97e-01 0.0287 0.222 0.05 NK_HLA L2
ENSG00000197056 ZMYM1 -257979 sc-eQTL 7.12e-01 0.0772 0.209 0.05 NK_HLA L2
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 5.60e-01 0.111 0.19 0.05 NK_HLA L2
ENSG00000239636 AC004865.2 -803536 sc-eQTL 6.63e-01 -0.0947 0.217 0.05 NK_HLA L2
ENSG00000243749 TMEM35B -211160 sc-eQTL 6.26e-01 -0.0851 0.174 0.05 NK_HLA L2
ENSG00000020129 NCDN -783280 sc-eQTL 5.15e-01 0.151 0.231 0.056 PB L2
ENSG00000116544 DLGAP3 -155457 sc-eQTL 1.57e-01 0.402 0.282 0.056 PB L2
ENSG00000116560 SFPQ -418952 sc-eQTL 7.73e-01 0.0475 0.164 0.056 PB L2
ENSG00000126067 PSMB2 -867333 sc-eQTL 3.28e-01 -0.135 0.137 0.056 PB L2
ENSG00000142686 C1orf216 -944701 sc-eQTL 4.17e-01 0.195 0.24 0.056 PB L2
ENSG00000142687 KIAA0319L -783757 sc-eQTL 7.05e-01 -0.102 0.268 0.056 PB L2
ENSG00000146463 ZMYM4 -494516 sc-eQTL 4.32e-02 0.616 0.301 0.056 PB L2
ENSG00000163866 SMIM12 -85562 sc-eQTL 8.09e-01 0.0631 0.26 0.056 PB L2
ENSG00000163867 ZMYM6 -257752 sc-eQTL 2.50e-01 -0.354 0.306 0.056 PB L2
ENSG00000197056 ZMYM1 -257979 sc-eQTL 5.09e-01 0.177 0.267 0.056 PB L2
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 4.12e-01 -0.221 0.269 0.056 PB L2
ENSG00000239636 AC004865.2 -803536 sc-eQTL 2.83e-01 0.294 0.273 0.056 PB L2
ENSG00000243749 TMEM35B -211160 sc-eQTL 8.08e-01 -0.0625 0.257 0.056 PB L2
ENSG00000020129 NCDN -783280 sc-eQTL 9.13e-01 0.0228 0.208 0.05 Pro_T L2
ENSG00000092853 CLSPN -995785 sc-eQTL 2.47e-01 -0.12 0.103 0.05 Pro_T L2
ENSG00000116544 DLGAP3 -155457 sc-eQTL 4.49e-01 0.148 0.195 0.05 Pro_T L2
ENSG00000116560 SFPQ -418952 sc-eQTL 9.88e-01 0.00225 0.148 0.05 Pro_T L2
ENSG00000126067 PSMB2 -867333 sc-eQTL 5.06e-01 0.0775 0.116 0.05 Pro_T L2
ENSG00000142686 C1orf216 -944701 sc-eQTL 7.60e-01 0.0615 0.201 0.05 Pro_T L2
ENSG00000142687 KIAA0319L -783757 sc-eQTL 3.23e-01 -0.225 0.227 0.05 Pro_T L2
ENSG00000146463 ZMYM4 -494516 sc-eQTL 6.15e-01 -0.111 0.22 0.05 Pro_T L2
ENSG00000163866 SMIM12 -85562 sc-eQTL 6.51e-01 -0.0962 0.212 0.05 Pro_T L2
ENSG00000163867 ZMYM6 -257752 sc-eQTL 2.73e-01 0.252 0.23 0.05 Pro_T L2
ENSG00000197056 ZMYM1 -257979 sc-eQTL 9.16e-02 -0.323 0.191 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 1.85e-01 0.27 0.203 0.05 Pro_T L2
ENSG00000239636 AC004865.2 -803536 sc-eQTL 4.84e-01 0.144 0.206 0.05 Pro_T L2
ENSG00000243749 TMEM35B -211160 sc-eQTL 7.13e-01 -0.0637 0.173 0.05 Pro_T L2
ENSG00000020129 NCDN -783280 sc-eQTL 1.76e-01 0.324 0.239 0.055 gdT L2
ENSG00000092853 CLSPN -995785 sc-eQTL 5.07e-01 -0.133 0.2 0.055 gdT L2
ENSG00000116544 DLGAP3 -155457 sc-eQTL 9.24e-01 -0.0222 0.233 0.055 gdT L2
ENSG00000116560 SFPQ -418952 sc-eQTL 4.42e-01 0.119 0.154 0.055 gdT L2
ENSG00000126067 PSMB2 -867333 sc-eQTL 6.85e-01 0.0877 0.216 0.055 gdT L2
ENSG00000142686 C1orf216 -944701 sc-eQTL 8.98e-01 -0.03 0.232 0.055 gdT L2
ENSG00000142687 KIAA0319L -783757 sc-eQTL 7.30e-01 0.0805 0.233 0.055 gdT L2
ENSG00000146463 ZMYM4 -494516 sc-eQTL 7.19e-01 0.0812 0.225 0.055 gdT L2
ENSG00000163866 SMIM12 -85562 sc-eQTL 1.16e-01 0.382 0.242 0.055 gdT L2
ENSG00000163867 ZMYM6 -257752 sc-eQTL 8.78e-01 -0.0387 0.252 0.055 gdT L2
ENSG00000197056 ZMYM1 -257979 sc-eQTL 3.20e-01 -0.225 0.226 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 -591884 sc-eQTL 3.81e-01 0.188 0.214 0.055 gdT L2
ENSG00000239636 AC004865.2 -803536 sc-eQTL 9.79e-01 0.00557 0.21 0.055 gdT L2
ENSG00000243749 TMEM35B -211160 sc-eQTL 9.88e-01 0.00281 0.179 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000163866 SMIM12 -85562 eQTL 0.000373 0.242 0.0677 0.0 0.0 0.0339
ENSG00000189280 GJB5 19146 eQTL 3.59e-06 0.481 0.103 0.0012 0.0 0.0339

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116819 \N -799121 2.66e-07 1.06e-07 3.62e-08 1.82e-07 9.65e-08 9.32e-08 1.38e-07 5.35e-08 1.42e-07 4.38e-08 1.62e-07 8.03e-08 1.3e-07 6.21e-08 5.55e-08 8.01e-08 4.94e-08 1.1e-07 5.19e-08 4.03e-08 1.05e-07 1.28e-07 1.32e-07 4.67e-08 1.31e-07 1.13e-07 1.1e-07 8.71e-08 1.03e-07 1.09e-07 9.58e-08 3.84e-08 2.91e-08 8.25e-08 8.99e-08 3.99e-08 4.78e-08 9.68e-08 7.47e-08 3.18e-08 5.14e-08 1.35e-07 4.04e-08 3.06e-08 6.38e-08 1.7e-08 1.27e-07 3.86e-09 4.94e-08
ENSG00000163866 SMIM12 -85562 4.92e-06 8.28e-06 6.33e-07 3.51e-06 1.53e-06 1.57e-06 9.6e-06 1.09e-06 4.86e-06 2.88e-06 7.6e-06 3.27e-06 1.12e-05 1.79e-06 9e-07 3.42e-06 2.96e-06 3.71e-06 1.43e-06 1.51e-06 2.9e-06 5.5e-06 7.18e-06 1.55e-06 9.12e-06 1.29e-06 2.39e-06 1.73e-06 7.85e-06 4.67e-06 2.81e-06 4.17e-07 8.13e-07 1.73e-06 1.98e-06 1.18e-06 9.07e-07 4.72e-07 8.6e-07 3.42e-07 2.11e-07 1.15e-05 6.31e-07 1.74e-07 4.06e-07 7.44e-07 6.48e-07 4.11e-07 5.14e-07
ENSG00000189280 GJB5 19146 1.45e-05 2.54e-05 2.67e-06 1.15e-05 2.41e-06 6.85e-06 3.46e-05 3.01e-06 1.74e-05 7.65e-06 2.28e-05 7.65e-06 3.56e-05 7.53e-06 4.78e-06 9.01e-06 9.72e-06 1.35e-05 4.02e-06 4.17e-06 7.4e-06 1.58e-05 2.69e-05 4.71e-06 2.96e-05 4.58e-06 7.74e-06 6.24e-06 2.61e-05 1.45e-05 1.13e-05 9.91e-07 1.15e-06 3.78e-06 7.16e-06 3.78e-06 1.79e-06 1.95e-06 2.7e-06 1.26e-06 9.74e-07 2.95e-05 2.34e-06 1.79e-07 8.66e-07 2.15e-06 1.94e-06 8.24e-07 6.24e-07
ENSG00000230163 \N -76501 5.46e-06 9.16e-06 8.81e-07 4.03e-06 1.59e-06 1.81e-06 1.05e-05 1.29e-06 4.81e-06 3.06e-06 8.91e-06 3.18e-06 1.15e-05 2.59e-06 1.18e-06 3.72e-06 3.7e-06 3.94e-06 1.66e-06 1.69e-06 2.75e-06 7.11e-06 8.65e-06 1.99e-06 1.04e-05 1.58e-06 2.51e-06 1.62e-06 9.56e-06 5.73e-06 2.72e-06 4.9e-07 6.32e-07 1.6e-06 2.35e-06 1.35e-06 9.7e-07 4.76e-07 9.49e-07 3.88e-07 2.4e-07 1.28e-05 6.85e-07 1.91e-07 5.79e-07 1.34e-06 8.08e-07 5.05e-07 5.83e-07