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Genes within 1Mb (chr1:34770996:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -786477 sc-eQTL 6.19e-01 0.101 0.204 0.05 CD4_CTL L2
ENSG00000116544 DLGAP3 -158654 sc-eQTL 3.50e-01 0.177 0.189 0.05 CD4_CTL L2
ENSG00000116560 SFPQ -422149 sc-eQTL 4.10e-01 -0.112 0.136 0.05 CD4_CTL L2
ENSG00000126067 PSMB2 -870530 sc-eQTL 5.21e-01 -0.124 0.193 0.05 CD4_CTL L2
ENSG00000142686 C1orf216 -947898 sc-eQTL 5.48e-01 -0.112 0.187 0.05 CD4_CTL L2
ENSG00000142687 KIAA0319L -786954 sc-eQTL 6.10e-01 0.106 0.207 0.05 CD4_CTL L2
ENSG00000146463 ZMYM4 -497713 sc-eQTL 6.42e-01 -0.0954 0.205 0.05 CD4_CTL L2
ENSG00000163866 SMIM12 -88759 sc-eQTL 4.20e-01 0.156 0.193 0.05 CD4_CTL L2
ENSG00000163867 ZMYM6 -260949 sc-eQTL 7.59e-01 0.0644 0.21 0.05 CD4_CTL L2
ENSG00000197056 ZMYM1 -261176 sc-eQTL 3.30e-01 -0.206 0.211 0.05 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -595081 sc-eQTL 8.17e-01 -0.0441 0.19 0.05 CD4_CTL L2
ENSG00000239636 AC004865.2 -806733 sc-eQTL 3.20e-01 0.189 0.19 0.05 CD4_CTL L2
ENSG00000243749 TMEM35B -214357 sc-eQTL 2.37e-01 0.19 0.16 0.05 CD4_CTL L2
ENSG00000020129 NCDN -786477 sc-eQTL 8.48e-01 -0.0378 0.196 0.053 CD8_TCM L2
ENSG00000116544 DLGAP3 -158654 sc-eQTL 8.76e-01 0.0302 0.193 0.053 CD8_TCM L2
ENSG00000116560 SFPQ -422149 sc-eQTL 5.69e-01 0.0625 0.11 0.053 CD8_TCM L2
ENSG00000126067 PSMB2 -870530 sc-eQTL 1.79e-01 -0.247 0.183 0.053 CD8_TCM L2
ENSG00000142686 C1orf216 -947898 sc-eQTL 2.96e-01 0.191 0.182 0.053 CD8_TCM L2
ENSG00000142687 KIAA0319L -786954 sc-eQTL 7.16e-01 -0.0645 0.177 0.053 CD8_TCM L2
ENSG00000146463 ZMYM4 -497713 sc-eQTL 2.02e-01 -0.241 0.188 0.053 CD8_TCM L2
ENSG00000163866 SMIM12 -88759 sc-eQTL 2.99e-01 -0.195 0.187 0.053 CD8_TCM L2
ENSG00000163867 ZMYM6 -260949 sc-eQTL 5.97e-01 0.109 0.205 0.053 CD8_TCM L2
ENSG00000197056 ZMYM1 -261176 sc-eQTL 3.83e-01 -0.164 0.188 0.053 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -595081 sc-eQTL 6.17e-01 -0.0891 0.178 0.053 CD8_TCM L2
ENSG00000239636 AC004865.2 -806733 sc-eQTL 3.60e-01 0.17 0.186 0.053 CD8_TCM L2
ENSG00000243749 TMEM35B -214357 sc-eQTL 7.48e-01 -0.0488 0.151 0.053 CD8_TCM L2
ENSG00000020129 NCDN -786477 sc-eQTL 3.02e-01 0.216 0.209 0.053 CD8_TEM L2
ENSG00000116544 DLGAP3 -158654 sc-eQTL 8.02e-01 0.0457 0.182 0.053 CD8_TEM L2
ENSG00000116560 SFPQ -422149 sc-eQTL 3.22e-01 -0.115 0.116 0.053 CD8_TEM L2
ENSG00000126067 PSMB2 -870530 sc-eQTL 7.00e-02 0.323 0.177 0.053 CD8_TEM L2
ENSG00000142686 C1orf216 -947898 sc-eQTL 6.62e-01 0.0813 0.186 0.053 CD8_TEM L2
ENSG00000142687 KIAA0319L -786954 sc-eQTL 9.48e-01 -0.0129 0.197 0.053 CD8_TEM L2
ENSG00000146463 ZMYM4 -497713 sc-eQTL 7.12e-01 -0.0757 0.204 0.053 CD8_TEM L2
ENSG00000163866 SMIM12 -88759 sc-eQTL 1.27e-02 0.502 0.199 0.053 CD8_TEM L2
ENSG00000163867 ZMYM6 -260949 sc-eQTL 4.03e-01 -0.169 0.201 0.053 CD8_TEM L2
ENSG00000197056 ZMYM1 -261176 sc-eQTL 2.91e-01 -0.199 0.188 0.053 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -595081 sc-eQTL 9.39e-01 0.014 0.182 0.053 CD8_TEM L2
ENSG00000239636 AC004865.2 -806733 sc-eQTL 9.50e-01 0.0121 0.192 0.053 CD8_TEM L2
ENSG00000243749 TMEM35B -214357 sc-eQTL 5.69e-01 -0.0823 0.144 0.053 CD8_TEM L2
ENSG00000020129 NCDN -786477 sc-eQTL 8.38e-01 -0.0398 0.195 0.05 NK_HLA L2
ENSG00000116544 DLGAP3 -158654 sc-eQTL 8.92e-01 0.0254 0.187 0.05 NK_HLA L2
ENSG00000116560 SFPQ -422149 sc-eQTL 3.63e-01 -0.126 0.138 0.05 NK_HLA L2
ENSG00000126067 PSMB2 -870530 sc-eQTL 4.32e-01 -0.16 0.204 0.05 NK_HLA L2
ENSG00000142686 C1orf216 -947898 sc-eQTL 6.94e-01 -0.0771 0.196 0.05 NK_HLA L2
ENSG00000142687 KIAA0319L -786954 sc-eQTL 6.60e-01 -0.088 0.2 0.05 NK_HLA L2
ENSG00000146463 ZMYM4 -497713 sc-eQTL 7.59e-01 -0.0583 0.19 0.05 NK_HLA L2
ENSG00000163866 SMIM12 -88759 sc-eQTL 8.68e-01 0.0333 0.199 0.05 NK_HLA L2
ENSG00000163867 ZMYM6 -260949 sc-eQTL 2.15e-01 -0.258 0.207 0.05 NK_HLA L2
ENSG00000197056 ZMYM1 -261176 sc-eQTL 1.76e-01 0.265 0.195 0.05 NK_HLA L2
ENSG00000227409 ZMYM4-AS1 -595081 sc-eQTL 2.73e-01 -0.196 0.178 0.05 NK_HLA L2
ENSG00000239636 AC004865.2 -806733 sc-eQTL 1.71e-02 0.484 0.201 0.05 NK_HLA L2
ENSG00000243749 TMEM35B -214357 sc-eQTL 4.57e-01 -0.122 0.164 0.05 NK_HLA L2
ENSG00000020129 NCDN -786477 sc-eQTL 8.10e-01 -0.046 0.192 0.05 Pro_T L2
ENSG00000092853 CLSPN -998982 sc-eQTL 3.74e-01 -0.0847 0.0951 0.05 Pro_T L2
ENSG00000116544 DLGAP3 -158654 sc-eQTL 5.93e-01 -0.096 0.179 0.05 Pro_T L2
ENSG00000116560 SFPQ -422149 sc-eQTL 3.16e-01 -0.137 0.136 0.05 Pro_T L2
ENSG00000126067 PSMB2 -870530 sc-eQTL 8.21e-01 -0.0244 0.107 0.05 Pro_T L2
ENSG00000142686 C1orf216 -947898 sc-eQTL 1.70e-01 0.254 0.184 0.05 Pro_T L2
ENSG00000142687 KIAA0319L -786954 sc-eQTL 9.48e-01 0.0138 0.21 0.05 Pro_T L2
ENSG00000146463 ZMYM4 -497713 sc-eQTL 2.31e-01 -0.243 0.203 0.05 Pro_T L2
ENSG00000163866 SMIM12 -88759 sc-eQTL 7.79e-01 0.0548 0.196 0.05 Pro_T L2
ENSG00000163867 ZMYM6 -260949 sc-eQTL 5.35e-01 0.132 0.212 0.05 Pro_T L2
ENSG00000197056 ZMYM1 -261176 sc-eQTL 6.21e-01 0.0876 0.177 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 -595081 sc-eQTL 4.08e-01 -0.155 0.187 0.05 Pro_T L2
ENSG00000239636 AC004865.2 -806733 sc-eQTL 9.94e-01 0.00149 0.19 0.05 Pro_T L2
ENSG00000243749 TMEM35B -214357 sc-eQTL 9.14e-01 0.0172 0.159 0.05 Pro_T L2
ENSG00000020129 NCDN -786477 sc-eQTL 3.68e-01 -0.203 0.225 0.055 gdT L2
ENSG00000092853 CLSPN -998982 sc-eQTL 1.67e-01 -0.259 0.186 0.055 gdT L2
ENSG00000116544 DLGAP3 -158654 sc-eQTL 3.50e-01 0.205 0.218 0.055 gdT L2
ENSG00000116560 SFPQ -422149 sc-eQTL 8.40e-01 -0.0292 0.144 0.055 gdT L2
ENSG00000126067 PSMB2 -870530 sc-eQTL 5.00e-01 0.137 0.202 0.055 gdT L2
ENSG00000142686 C1orf216 -947898 sc-eQTL 5.53e-01 -0.129 0.217 0.055 gdT L2
ENSG00000142687 KIAA0319L -786954 sc-eQTL 1.84e-02 -0.512 0.214 0.055 gdT L2
ENSG00000146463 ZMYM4 -497713 sc-eQTL 8.09e-01 0.0512 0.211 0.055 gdT L2
ENSG00000163866 SMIM12 -88759 sc-eQTL 4.11e-01 0.188 0.228 0.055 gdT L2
ENSG00000163867 ZMYM6 -260949 sc-eQTL 1.13e-01 0.374 0.235 0.055 gdT L2
ENSG00000197056 ZMYM1 -261176 sc-eQTL 4.18e-01 0.172 0.212 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 -595081 sc-eQTL 2.69e-02 -0.443 0.198 0.055 gdT L2
ENSG00000239636 AC004865.2 -806733 sc-eQTL 5.22e-01 0.126 0.196 0.055 gdT L2
ENSG00000243749 TMEM35B -214357 sc-eQTL 2.21e-01 0.205 0.167 0.055 gdT L2
ENSG00000020129 NCDN -786477 sc-eQTL 3.78e-01 0.176 0.199 0.052 ncMono L2
ENSG00000116544 DLGAP3 -158654 sc-eQTL 1.64e-01 0.231 0.165 0.052 ncMono L2
ENSG00000116560 SFPQ -422149 sc-eQTL 6.84e-01 -0.0618 0.151 0.052 ncMono L2
ENSG00000126067 PSMB2 -870530 sc-eQTL 4.11e-01 0.126 0.153 0.052 ncMono L2
ENSG00000142686 C1orf216 -947898 sc-eQTL 3.32e-01 0.185 0.19 0.052 ncMono L2
ENSG00000142687 KIAA0319L -786954 sc-eQTL 4.11e-01 -0.156 0.189 0.052 ncMono L2
ENSG00000146463 ZMYM4 -497713 sc-eQTL 1.92e-01 -0.211 0.161 0.052 ncMono L2
ENSG00000163866 SMIM12 -88759 sc-eQTL 8.94e-01 -0.0241 0.181 0.052 ncMono L2
ENSG00000163867 ZMYM6 -260949 sc-eQTL 1.20e-01 0.291 0.186 0.052 ncMono L2
ENSG00000197056 ZMYM1 -261176 sc-eQTL 4.21e-01 -0.143 0.178 0.052 ncMono L2
ENSG00000227409 ZMYM4-AS1 -595081 sc-eQTL 2.25e-01 -0.212 0.174 0.052 ncMono L2
ENSG00000239636 AC004865.2 -806733 sc-eQTL 8.68e-02 0.321 0.186 0.052 ncMono L2
ENSG00000243749 TMEM35B -214357 sc-eQTL 8.42e-03 0.452 0.17 0.052 ncMono L2
ENSG00000020129 NCDN -786477 sc-eQTL 4.30e-01 -0.164 0.207 0.056 pDC L2
ENSG00000092853 CLSPN -998982 sc-eQTL 4.27e-01 0.123 0.154 0.056 pDC L2
ENSG00000116544 DLGAP3 -158654 sc-eQTL 6.29e-02 -0.377 0.201 0.056 pDC L2
ENSG00000116560 SFPQ -422149 sc-eQTL 8.37e-01 0.0277 0.134 0.056 pDC L2
ENSG00000126067 PSMB2 -870530 sc-eQTL 2.55e-01 -0.207 0.181 0.056 pDC L2
ENSG00000142686 C1orf216 -947898 sc-eQTL 4.54e-01 -0.123 0.164 0.056 pDC L2
ENSG00000142687 KIAA0319L -786954 sc-eQTL 3.93e-01 -0.192 0.224 0.056 pDC L2
ENSG00000146463 ZMYM4 -497713 sc-eQTL 8.01e-01 -0.0514 0.203 0.056 pDC L2
ENSG00000163866 SMIM12 -88759 sc-eQTL 4.36e-01 -0.166 0.212 0.056 pDC L2
ENSG00000163867 ZMYM6 -260949 sc-eQTL 2.54e-01 0.216 0.189 0.056 pDC L2
ENSG00000197056 ZMYM1 -261176 sc-eQTL 5.43e-01 -0.119 0.196 0.056 pDC L2
ENSG00000227409 ZMYM4-AS1 -595081 sc-eQTL 6.82e-01 -0.0808 0.197 0.056 pDC L2
ENSG00000239636 AC004865.2 -806733 sc-eQTL 6.22e-01 0.105 0.212 0.056 pDC L2
ENSG00000243749 TMEM35B -214357 sc-eQTL 5.46e-01 -0.105 0.174 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000126067 PSMB2 -870530 eQTL 0.00533 -0.0703 0.0252 0.0 0.0 0.0505
ENSG00000163866 SMIM12 -88759 eQTL 0.0147 0.132 0.0541 0.0 0.0 0.0505
ENSG00000187513 GJA4 -22003 eQTL 0.000735 0.2 0.059 0.0 0.0 0.0505
ENSG00000189280 GJB5 15949 eQTL 0.0256 -0.186 0.0831 0.0 0.0 0.0505
ENSG00000197056 ZMYM1 -261176 eQTL 0.0172 0.0834 0.035 0.00102 0.0 0.0505
ENSG00000241014 AC114490.1 -207710 eQTL 0.0174 0.172 0.0722 0.0 0.0 0.0505

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000142686 \N -947898 2.69e-07 1.3e-07 3.88e-08 1.81e-07 9.21e-08 9.8e-08 1.61e-07 5.37e-08 1.44e-07 4.74e-08 1.57e-07 8.59e-08 1.59e-07 6.76e-08 6.17e-08 7.37e-08 4.17e-08 1.26e-07 5.82e-08 4.21e-08 1.13e-07 1.28e-07 1.44e-07 3.49e-08 1.37e-07 1.14e-07 1.07e-07 9.57e-08 1.08e-07 1.07e-07 9.7e-08 3.65e-08 4.02e-08 8e-08 7.02e-08 3.93e-08 5.65e-08 8.93e-08 6.43e-08 3.8e-08 5.13e-08 1.36e-07 5.22e-08 7.61e-09 4.67e-08 1.99e-08 1.19e-07 3.8e-09 4.81e-08