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Genes within 1Mb (chr1:34763658:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -793815 sc-eQTL 9.73e-01 -0.00696 0.207 0.051 B_Activated L2
ENSG00000116544 DLGAP3 -165992 sc-eQTL 5.82e-01 0.102 0.185 0.051 B_Activated L2
ENSG00000116560 SFPQ -429487 sc-eQTL 1.24e-01 0.22 0.143 0.051 B_Activated L2
ENSG00000126067 PSMB2 -877868 sc-eQTL 1.15e-01 0.354 0.224 0.051 B_Activated L2
ENSG00000142686 C1orf216 -955236 sc-eQTL 3.10e-01 -0.202 0.198 0.051 B_Activated L2
ENSG00000142687 KIAA0319L -794292 sc-eQTL 3.44e-02 0.493 0.231 0.051 B_Activated L2
ENSG00000146463 ZMYM4 -505051 sc-eQTL 8.30e-01 -0.0517 0.24 0.051 B_Activated L2
ENSG00000163866 SMIM12 -96097 sc-eQTL 1.08e-01 -0.388 0.24 0.051 B_Activated L2
ENSG00000163867 ZMYM6 -268287 sc-eQTL 4.32e-01 0.189 0.24 0.051 B_Activated L2
ENSG00000197056 ZMYM1 -268514 sc-eQTL 1.23e-01 -0.308 0.199 0.051 B_Activated L2
ENSG00000227409 ZMYM4-AS1 -602419 sc-eQTL 9.18e-01 -0.0207 0.2 0.051 B_Activated L2
ENSG00000239636 AC004865.2 -814071 sc-eQTL 4.80e-01 -0.163 0.231 0.051 B_Activated L2
ENSG00000243749 TMEM35B -221695 sc-eQTL 3.12e-01 0.201 0.198 0.051 B_Activated L2
ENSG00000020129 NCDN -793815 sc-eQTL 2.97e-01 -0.235 0.224 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 -165992 sc-eQTL 9.13e-01 0.0215 0.196 0.05 CD8_TEM L2
ENSG00000116560 SFPQ -429487 sc-eQTL 3.74e-01 -0.111 0.124 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 -877868 sc-eQTL 9.29e-01 0.0173 0.193 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 -955236 sc-eQTL 1.45e-01 -0.291 0.199 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -794292 sc-eQTL 7.07e-01 -0.0799 0.212 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 -505051 sc-eQTL 6.27e-01 -0.107 0.22 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 -96097 sc-eQTL 5.17e-01 0.141 0.218 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 -268287 sc-eQTL 3.59e-01 0.199 0.217 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 -268514 sc-eQTL 3.09e-01 -0.206 0.202 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -602419 sc-eQTL 8.80e-01 0.0295 0.196 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -814071 sc-eQTL 8.00e-01 -0.0524 0.207 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B -221695 sc-eQTL 8.01e-01 0.0392 0.155 0.05 CD8_TEM L2
ENSG00000020129 NCDN -793815 sc-eQTL 6.23e-01 0.118 0.238 0.052 PB L2
ENSG00000116544 DLGAP3 -165992 sc-eQTL 9.83e-02 0.482 0.289 0.052 PB L2
ENSG00000116560 SFPQ -429487 sc-eQTL 7.94e-01 0.0442 0.169 0.052 PB L2
ENSG00000126067 PSMB2 -877868 sc-eQTL 9.10e-01 -0.0162 0.142 0.052 PB L2
ENSG00000142686 C1orf216 -955236 sc-eQTL 3.49e-01 0.232 0.247 0.052 PB L2
ENSG00000142687 KIAA0319L -794292 sc-eQTL 4.72e-01 -0.199 0.275 0.052 PB L2
ENSG00000146463 ZMYM4 -505051 sc-eQTL 1.61e-01 0.441 0.313 0.052 PB L2
ENSG00000163866 SMIM12 -96097 sc-eQTL 4.87e-01 0.186 0.267 0.052 PB L2
ENSG00000163867 ZMYM6 -268287 sc-eQTL 6.15e-01 -0.16 0.316 0.052 PB L2
ENSG00000197056 ZMYM1 -268514 sc-eQTL 8.40e-01 0.0556 0.275 0.052 PB L2
ENSG00000227409 ZMYM4-AS1 -602419 sc-eQTL 5.42e-01 -0.17 0.277 0.052 PB L2
ENSG00000239636 AC004865.2 -814071 sc-eQTL 6.55e-01 0.126 0.282 0.052 PB L2
ENSG00000243749 TMEM35B -221695 sc-eQTL 7.27e-01 -0.0924 0.264 0.052 PB L2
ENSG00000020129 NCDN -793815 sc-eQTL 2.17e-01 0.303 0.244 0.052 gdT L2
ENSG00000116544 DLGAP3 -165992 sc-eQTL 9.69e-01 0.00935 0.239 0.052 gdT L2
ENSG00000116560 SFPQ -429487 sc-eQTL 3.14e-01 0.158 0.157 0.052 gdT L2
ENSG00000126067 PSMB2 -877868 sc-eQTL 5.27e-01 0.14 0.22 0.052 gdT L2
ENSG00000142686 C1orf216 -955236 sc-eQTL 6.95e-01 -0.0932 0.237 0.052 gdT L2
ENSG00000142687 KIAA0319L -794292 sc-eQTL 6.39e-01 0.112 0.238 0.052 gdT L2
ENSG00000146463 ZMYM4 -505051 sc-eQTL 4.77e-01 0.164 0.23 0.052 gdT L2
ENSG00000163866 SMIM12 -96097 sc-eQTL 9.17e-02 0.418 0.246 0.052 gdT L2
ENSG00000163867 ZMYM6 -268287 sc-eQTL 9.38e-01 0.0199 0.258 0.052 gdT L2
ENSG00000197056 ZMYM1 -268514 sc-eQTL 4.58e-01 -0.172 0.231 0.052 gdT L2
ENSG00000227409 ZMYM4-AS1 -602419 sc-eQTL 3.46e-01 0.207 0.219 0.052 gdT L2
ENSG00000239636 AC004865.2 -814071 sc-eQTL 7.24e-01 -0.0757 0.214 0.052 gdT L2
ENSG00000243749 TMEM35B -221695 sc-eQTL 6.91e-01 0.0728 0.183 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000163866 SMIM12 -96097 eQTL 0.0049 0.183 0.0649 0.0 0.0 0.0373
ENSG00000187513 GJA4 -29341 eQTL 0.512 0.0467 0.0712 0.00106 0.0 0.0373
ENSG00000189280 GJB5 8611 eQTL 2.28e-05 0.421 0.0989 0.00157 0.0 0.0373

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116819 \N -809656 2.64e-07 1.11e-07 3.28e-08 1.7e-07 1.03e-07 9.05e-08 1.39e-07 5.29e-08 1.32e-07 3.99e-08 1.61e-07 7.4e-08 1.21e-07 6.1e-08 4.48e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.33e-07 1.03e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.29e-08 2.6e-08 8.26e-08 9.56e-08 4.14e-08 5.09e-08 8e-08 8.44e-08 3.87e-08 3.18e-08 1.39e-07 4.34e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000163866 SMIM12 -96097 1.14e-05 4.34e-06 6.36e-07 2.64e-06 1.87e-07 9.7e-07 1.82e-06 2.47e-07 1.73e-06 5.63e-07 1.95e-06 7.5e-07 2.9e-06 1.29e-06 3.35e-07 1.04e-06 1.1e-06 2.24e-06 5.65e-07 6.02e-07 6.58e-07 1.92e-06 3.06e-06 6.35e-07 2.58e-06 4.36e-07 1.01e-06 9.91e-07 2.18e-06 1.66e-06 8.2e-07 5.88e-08 3.79e-07 1.3e-06 1.67e-06 6.26e-07 7.58e-07 1.41e-07 2.44e-07 2.51e-07 2.93e-07 3.83e-06 4.38e-07 1.29e-08 1.85e-07 1.34e-07 2.09e-07 1.11e-08 6.06e-08
ENSG00000189280 GJB5 8611 4.42e-05 2.51e-05 3.68e-06 1.13e-05 2.57e-06 9.68e-06 2.88e-05 2.17e-06 1.41e-05 6.01e-06 1.78e-05 6.72e-06 3.3e-05 6.61e-06 4.78e-06 9.88e-06 7.86e-06 1.18e-05 3.04e-06 3.27e-06 7.06e-06 1.26e-05 2.13e-05 4.6e-06 2.52e-05 4.4e-06 7.43e-06 6.08e-06 2.34e-05 1.3e-05 8.99e-06 1.02e-06 1.68e-06 3.89e-06 7.03e-06 3.8e-06 1.9e-06 2e-06 2.15e-06 2.11e-06 9.58e-07 3.66e-05 2.88e-06 1.81e-07 8.13e-07 1.76e-06 2.08e-06 6.95e-07 8.91e-07