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Genes within 1Mb (chr1:34619361:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -938112 sc-eQTL 8.40e-01 0.0417 0.206 0.052 DC L1
ENSG00000116544 DLGAP3 -310289 sc-eQTL 9.40e-01 -0.0145 0.191 0.052 DC L1
ENSG00000116560 SFPQ -573784 sc-eQTL 8.96e-01 0.0155 0.119 0.052 DC L1
ENSG00000142687 KIAA0319L -938589 sc-eQTL 2.30e-01 -0.239 0.199 0.052 DC L1
ENSG00000146463 ZMYM4 -649348 sc-eQTL 7.36e-01 0.0594 0.176 0.052 DC L1
ENSG00000163866 SMIM12 -240394 sc-eQTL 4.28e-01 -0.149 0.188 0.052 DC L1
ENSG00000163867 ZMYM6 -412584 sc-eQTL 1.29e-01 0.27 0.177 0.052 DC L1
ENSG00000197056 ZMYM1 -412811 sc-eQTL 2.46e-01 0.225 0.193 0.052 DC L1
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 4.91e-01 -0.14 0.203 0.052 DC L1
ENSG00000239636 AC004865.2 -958368 sc-eQTL 6.77e-01 0.0836 0.201 0.052 DC L1
ENSG00000243749 TMEM35B -365992 sc-eQTL 4.04e-01 -0.143 0.171 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -938112 sc-eQTL 4.05e-01 -0.179 0.214 0.05 CD4_CTL L2
ENSG00000116544 DLGAP3 -310289 sc-eQTL 8.20e-01 0.0454 0.199 0.05 CD4_CTL L2
ENSG00000116560 SFPQ -573784 sc-eQTL 3.22e-01 0.142 0.143 0.05 CD4_CTL L2
ENSG00000142687 KIAA0319L -938589 sc-eQTL 6.01e-01 0.114 0.218 0.05 CD4_CTL L2
ENSG00000146463 ZMYM4 -649348 sc-eQTL 8.62e-01 -0.0377 0.216 0.05 CD4_CTL L2
ENSG00000163866 SMIM12 -240394 sc-eQTL 1.65e-01 0.282 0.203 0.05 CD4_CTL L2
ENSG00000163867 ZMYM6 -412584 sc-eQTL 1.20e-01 0.343 0.219 0.05 CD4_CTL L2
ENSG00000197056 ZMYM1 -412811 sc-eQTL 9.29e-01 0.0199 0.223 0.05 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 4.55e-01 -0.15 0.2 0.05 CD4_CTL L2
ENSG00000239636 AC004865.2 -958368 sc-eQTL 6.02e-01 -0.104 0.2 0.05 CD4_CTL L2
ENSG00000243749 TMEM35B -365992 sc-eQTL 9.95e-01 0.00105 0.169 0.05 CD4_CTL L2
ENSG00000020129 NCDN -938112 sc-eQTL 3.51e-01 0.195 0.208 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 -310289 sc-eQTL 9.69e-01 -0.00806 0.205 0.051 CD8_TCM L2
ENSG00000116560 SFPQ -573784 sc-eQTL 6.50e-01 -0.0529 0.117 0.051 CD8_TCM L2
ENSG00000142687 KIAA0319L -938589 sc-eQTL 3.57e-01 -0.173 0.188 0.051 CD8_TCM L2
ENSG00000146463 ZMYM4 -649348 sc-eQTL 7.66e-01 -0.0601 0.201 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 -240394 sc-eQTL 6.57e-01 -0.0889 0.2 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 -412584 sc-eQTL 2.15e-01 0.271 0.218 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 -412811 sc-eQTL 3.77e-01 0.177 0.2 0.051 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 4.88e-01 -0.132 0.189 0.051 CD8_TCM L2
ENSG00000239636 AC004865.2 -958368 sc-eQTL 9.65e-02 0.328 0.196 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B -365992 sc-eQTL 1.50e-01 0.232 0.16 0.051 CD8_TCM L2
ENSG00000020129 NCDN -938112 sc-eQTL 4.44e-01 0.167 0.218 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 -310289 sc-eQTL 8.15e-03 -0.5 0.187 0.05 CD8_TEM L2
ENSG00000116560 SFPQ -573784 sc-eQTL 5.98e-01 0.0638 0.121 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -938589 sc-eQTL 5.36e-01 0.127 0.206 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 -649348 sc-eQTL 5.20e-01 0.138 0.214 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 -240394 sc-eQTL 6.92e-02 -0.384 0.21 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 -412584 sc-eQTL 4.45e-01 -0.161 0.21 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 -412811 sc-eQTL 3.19e-01 0.196 0.196 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 1.07e-01 -0.306 0.189 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -958368 sc-eQTL 1.13e-01 0.318 0.199 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B -365992 sc-eQTL 4.97e-01 -0.103 0.151 0.05 CD8_TEM L2
ENSG00000020129 NCDN -938112 sc-eQTL 3.06e-01 -0.202 0.197 0.05 NK_HLA L2
ENSG00000116544 DLGAP3 -310289 sc-eQTL 7.54e-01 0.0597 0.19 0.05 NK_HLA L2
ENSG00000116560 SFPQ -573784 sc-eQTL 2.36e-01 -0.166 0.14 0.05 NK_HLA L2
ENSG00000142687 KIAA0319L -938589 sc-eQTL 5.82e-01 0.112 0.203 0.05 NK_HLA L2
ENSG00000146463 ZMYM4 -649348 sc-eQTL 3.67e-01 0.174 0.192 0.05 NK_HLA L2
ENSG00000163866 SMIM12 -240394 sc-eQTL 5.64e-01 -0.117 0.202 0.05 NK_HLA L2
ENSG00000163867 ZMYM6 -412584 sc-eQTL 5.08e-02 0.411 0.209 0.05 NK_HLA L2
ENSG00000197056 ZMYM1 -412811 sc-eQTL 7.59e-01 0.0611 0.199 0.05 NK_HLA L2
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 6.65e-02 -0.332 0.18 0.05 NK_HLA L2
ENSG00000239636 AC004865.2 -958368 sc-eQTL 2.04e-01 0.263 0.206 0.05 NK_HLA L2
ENSG00000243749 TMEM35B -365992 sc-eQTL 2.42e-01 0.194 0.166 0.05 NK_HLA L2
ENSG00000020129 NCDN -938112 sc-eQTL 9.52e-01 -0.0118 0.197 0.05 Pro_T L2
ENSG00000116544 DLGAP3 -310289 sc-eQTL 9.56e-01 -0.0101 0.184 0.05 Pro_T L2
ENSG00000116560 SFPQ -573784 sc-eQTL 1.28e-01 0.213 0.139 0.05 Pro_T L2
ENSG00000142687 KIAA0319L -938589 sc-eQTL 6.85e-01 -0.0874 0.215 0.05 Pro_T L2
ENSG00000146463 ZMYM4 -649348 sc-eQTL 1.61e-01 0.293 0.208 0.05 Pro_T L2
ENSG00000163866 SMIM12 -240394 sc-eQTL 7.93e-02 -0.352 0.199 0.05 Pro_T L2
ENSG00000163867 ZMYM6 -412584 sc-eQTL 2.64e-01 0.243 0.217 0.05 Pro_T L2
ENSG00000197056 ZMYM1 -412811 sc-eQTL 2.54e-01 -0.207 0.181 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 6.42e-03 -0.521 0.189 0.05 Pro_T L2
ENSG00000239636 AC004865.2 -958368 sc-eQTL 7.37e-01 -0.0655 0.195 0.05 Pro_T L2
ENSG00000243749 TMEM35B -365992 sc-eQTL 8.26e-01 -0.036 0.164 0.05 Pro_T L2
ENSG00000020129 NCDN -938112 sc-eQTL 6.73e-01 0.0875 0.207 0.054 cDC L2
ENSG00000116544 DLGAP3 -310289 sc-eQTL 8.47e-01 -0.0398 0.206 0.054 cDC L2
ENSG00000116560 SFPQ -573784 sc-eQTL 2.87e-01 -0.139 0.13 0.054 cDC L2
ENSG00000142687 KIAA0319L -938589 sc-eQTL 1.23e-01 -0.311 0.2 0.054 cDC L2
ENSG00000146463 ZMYM4 -649348 sc-eQTL 5.26e-01 0.113 0.178 0.054 cDC L2
ENSG00000163866 SMIM12 -240394 sc-eQTL 3.65e-01 -0.177 0.195 0.054 cDC L2
ENSG00000163867 ZMYM6 -412584 sc-eQTL 5.29e-01 0.129 0.204 0.054 cDC L2
ENSG00000197056 ZMYM1 -412811 sc-eQTL 9.33e-02 0.324 0.192 0.054 cDC L2
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 7.23e-01 0.0682 0.193 0.054 cDC L2
ENSG00000239636 AC004865.2 -958368 sc-eQTL 8.33e-01 0.0427 0.202 0.054 cDC L2
ENSG00000243749 TMEM35B -365992 sc-eQTL 3.90e-01 -0.164 0.191 0.054 cDC L2
ENSG00000020129 NCDN -938112 sc-eQTL 9.43e-01 0.0172 0.24 0.055 gdT L2
ENSG00000116544 DLGAP3 -310289 sc-eQTL 2.18e-02 0.53 0.228 0.055 gdT L2
ENSG00000116560 SFPQ -573784 sc-eQTL 7.74e-01 0.044 0.153 0.055 gdT L2
ENSG00000142687 KIAA0319L -938589 sc-eQTL 5.27e-01 0.147 0.232 0.055 gdT L2
ENSG00000146463 ZMYM4 -649348 sc-eQTL 9.50e-01 0.0142 0.224 0.055 gdT L2
ENSG00000163866 SMIM12 -240394 sc-eQTL 3.83e-01 -0.212 0.242 0.055 gdT L2
ENSG00000163867 ZMYM6 -412584 sc-eQTL 7.55e-01 0.0787 0.252 0.055 gdT L2
ENSG00000197056 ZMYM1 -412811 sc-eQTL 3.43e-01 0.214 0.225 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 8.30e-01 0.046 0.214 0.055 gdT L2
ENSG00000239636 AC004865.2 -958368 sc-eQTL 7.63e-01 0.0631 0.209 0.055 gdT L2
ENSG00000243749 TMEM35B -365992 sc-eQTL 2.96e-01 -0.186 0.178 0.055 gdT L2
ENSG00000020129 NCDN -938112 sc-eQTL 7.91e-01 0.0559 0.211 0.059 pDC L2
ENSG00000116544 DLGAP3 -310289 sc-eQTL 8.74e-01 -0.0328 0.206 0.059 pDC L2
ENSG00000116560 SFPQ -573784 sc-eQTL 4.57e-01 0.101 0.135 0.059 pDC L2
ENSG00000142687 KIAA0319L -938589 sc-eQTL 6.74e-01 0.0961 0.228 0.059 pDC L2
ENSG00000146463 ZMYM4 -649348 sc-eQTL 2.02e-01 -0.263 0.205 0.059 pDC L2
ENSG00000163866 SMIM12 -240394 sc-eQTL 7.18e-01 -0.0778 0.215 0.059 pDC L2
ENSG00000163867 ZMYM6 -412584 sc-eQTL 3.05e-02 0.413 0.189 0.059 pDC L2
ENSG00000197056 ZMYM1 -412811 sc-eQTL 8.83e-01 0.0293 0.198 0.059 pDC L2
ENSG00000227409 ZMYM4-AS1 -746716 sc-eQTL 1.18e-01 -0.311 0.198 0.059 pDC L2
ENSG00000239636 AC004865.2 -958368 sc-eQTL 2.52e-01 0.247 0.214 0.059 pDC L2
ENSG00000243749 TMEM35B -365992 sc-eQTL 2.84e-01 -0.189 0.176 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000230163 \N -231333 1.09e-06 8.23e-07 7.76e-08 4.55e-07 1.07e-07 1.85e-07 5.82e-07 1.21e-07 4.18e-07 2.26e-07 1.03e-06 4.21e-07 9.37e-07 1.6e-07 2.14e-07 2.1e-07 3.35e-07 3.74e-07 2.13e-07 2.27e-07 1.86e-07 3.92e-07 3.84e-07 1.25e-07 8.62e-07 2.2e-07 3.26e-07 2.57e-07 2.98e-07 4.72e-07 3.56e-07 6.37e-08 4.42e-08 1.88e-07 3.8e-07 8.75e-08 2.79e-07 9.58e-08 8.06e-08 1.56e-08 1.22e-07 5.52e-07 7.3e-08 1.62e-08 8.45e-08 3.92e-08 1.04e-07 8.16e-08 5.05e-08