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Genes within 1Mb (chr1:34618187:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -939286 sc-eQTL 8.40e-01 0.0417 0.206 0.052 DC L1
ENSG00000116544 DLGAP3 -311463 sc-eQTL 9.40e-01 -0.0145 0.191 0.052 DC L1
ENSG00000116560 SFPQ -574958 sc-eQTL 8.96e-01 0.0155 0.119 0.052 DC L1
ENSG00000142687 KIAA0319L -939763 sc-eQTL 2.30e-01 -0.239 0.199 0.052 DC L1
ENSG00000146463 ZMYM4 -650522 sc-eQTL 7.36e-01 0.0594 0.176 0.052 DC L1
ENSG00000163866 SMIM12 -241568 sc-eQTL 4.28e-01 -0.149 0.188 0.052 DC L1
ENSG00000163867 ZMYM6 -413758 sc-eQTL 1.29e-01 0.27 0.177 0.052 DC L1
ENSG00000197056 ZMYM1 -413985 sc-eQTL 2.46e-01 0.225 0.193 0.052 DC L1
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 4.91e-01 -0.14 0.203 0.052 DC L1
ENSG00000239636 AC004865.2 -959542 sc-eQTL 6.77e-01 0.0836 0.201 0.052 DC L1
ENSG00000243749 TMEM35B -367166 sc-eQTL 4.04e-01 -0.143 0.171 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -939286 sc-eQTL 4.05e-01 -0.179 0.214 0.05 CD4_CTL L2
ENSG00000116544 DLGAP3 -311463 sc-eQTL 8.20e-01 0.0454 0.199 0.05 CD4_CTL L2
ENSG00000116560 SFPQ -574958 sc-eQTL 3.22e-01 0.142 0.143 0.05 CD4_CTL L2
ENSG00000142687 KIAA0319L -939763 sc-eQTL 6.01e-01 0.114 0.218 0.05 CD4_CTL L2
ENSG00000146463 ZMYM4 -650522 sc-eQTL 8.62e-01 -0.0377 0.216 0.05 CD4_CTL L2
ENSG00000163866 SMIM12 -241568 sc-eQTL 1.65e-01 0.282 0.203 0.05 CD4_CTL L2
ENSG00000163867 ZMYM6 -413758 sc-eQTL 1.20e-01 0.343 0.219 0.05 CD4_CTL L2
ENSG00000197056 ZMYM1 -413985 sc-eQTL 9.29e-01 0.0199 0.223 0.05 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 4.55e-01 -0.15 0.2 0.05 CD4_CTL L2
ENSG00000239636 AC004865.2 -959542 sc-eQTL 6.02e-01 -0.104 0.2 0.05 CD4_CTL L2
ENSG00000243749 TMEM35B -367166 sc-eQTL 9.95e-01 0.00105 0.169 0.05 CD4_CTL L2
ENSG00000020129 NCDN -939286 sc-eQTL 3.51e-01 0.195 0.208 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 -311463 sc-eQTL 9.69e-01 -0.00806 0.205 0.051 CD8_TCM L2
ENSG00000116560 SFPQ -574958 sc-eQTL 6.50e-01 -0.0529 0.117 0.051 CD8_TCM L2
ENSG00000142687 KIAA0319L -939763 sc-eQTL 3.57e-01 -0.173 0.188 0.051 CD8_TCM L2
ENSG00000146463 ZMYM4 -650522 sc-eQTL 7.66e-01 -0.0601 0.201 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 -241568 sc-eQTL 6.57e-01 -0.0889 0.2 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 -413758 sc-eQTL 2.15e-01 0.271 0.218 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 -413985 sc-eQTL 3.77e-01 0.177 0.2 0.051 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 4.88e-01 -0.132 0.189 0.051 CD8_TCM L2
ENSG00000239636 AC004865.2 -959542 sc-eQTL 9.65e-02 0.328 0.196 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B -367166 sc-eQTL 1.50e-01 0.232 0.16 0.051 CD8_TCM L2
ENSG00000020129 NCDN -939286 sc-eQTL 4.44e-01 0.167 0.218 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 -311463 sc-eQTL 8.15e-03 -0.5 0.187 0.05 CD8_TEM L2
ENSG00000116560 SFPQ -574958 sc-eQTL 5.98e-01 0.0638 0.121 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -939763 sc-eQTL 5.36e-01 0.127 0.206 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 -650522 sc-eQTL 5.20e-01 0.138 0.214 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 -241568 sc-eQTL 6.92e-02 -0.384 0.21 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 -413758 sc-eQTL 4.45e-01 -0.161 0.21 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 -413985 sc-eQTL 3.19e-01 0.196 0.196 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 1.07e-01 -0.306 0.189 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -959542 sc-eQTL 1.13e-01 0.318 0.199 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B -367166 sc-eQTL 4.97e-01 -0.103 0.151 0.05 CD8_TEM L2
ENSG00000020129 NCDN -939286 sc-eQTL 3.06e-01 -0.202 0.197 0.05 NK_HLA L2
ENSG00000116544 DLGAP3 -311463 sc-eQTL 7.54e-01 0.0597 0.19 0.05 NK_HLA L2
ENSG00000116560 SFPQ -574958 sc-eQTL 2.36e-01 -0.166 0.14 0.05 NK_HLA L2
ENSG00000142687 KIAA0319L -939763 sc-eQTL 5.82e-01 0.112 0.203 0.05 NK_HLA L2
ENSG00000146463 ZMYM4 -650522 sc-eQTL 3.67e-01 0.174 0.192 0.05 NK_HLA L2
ENSG00000163866 SMIM12 -241568 sc-eQTL 5.64e-01 -0.117 0.202 0.05 NK_HLA L2
ENSG00000163867 ZMYM6 -413758 sc-eQTL 5.08e-02 0.411 0.209 0.05 NK_HLA L2
ENSG00000197056 ZMYM1 -413985 sc-eQTL 7.59e-01 0.0611 0.199 0.05 NK_HLA L2
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 6.65e-02 -0.332 0.18 0.05 NK_HLA L2
ENSG00000239636 AC004865.2 -959542 sc-eQTL 2.04e-01 0.263 0.206 0.05 NK_HLA L2
ENSG00000243749 TMEM35B -367166 sc-eQTL 2.42e-01 0.194 0.166 0.05 NK_HLA L2
ENSG00000020129 NCDN -939286 sc-eQTL 9.52e-01 -0.0118 0.197 0.05 Pro_T L2
ENSG00000116544 DLGAP3 -311463 sc-eQTL 9.56e-01 -0.0101 0.184 0.05 Pro_T L2
ENSG00000116560 SFPQ -574958 sc-eQTL 1.28e-01 0.213 0.139 0.05 Pro_T L2
ENSG00000142687 KIAA0319L -939763 sc-eQTL 6.85e-01 -0.0874 0.215 0.05 Pro_T L2
ENSG00000146463 ZMYM4 -650522 sc-eQTL 1.61e-01 0.293 0.208 0.05 Pro_T L2
ENSG00000163866 SMIM12 -241568 sc-eQTL 7.93e-02 -0.352 0.199 0.05 Pro_T L2
ENSG00000163867 ZMYM6 -413758 sc-eQTL 2.64e-01 0.243 0.217 0.05 Pro_T L2
ENSG00000197056 ZMYM1 -413985 sc-eQTL 2.54e-01 -0.207 0.181 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 6.42e-03 -0.521 0.189 0.05 Pro_T L2
ENSG00000239636 AC004865.2 -959542 sc-eQTL 7.37e-01 -0.0655 0.195 0.05 Pro_T L2
ENSG00000243749 TMEM35B -367166 sc-eQTL 8.26e-01 -0.036 0.164 0.05 Pro_T L2
ENSG00000020129 NCDN -939286 sc-eQTL 6.73e-01 0.0875 0.207 0.054 cDC L2
ENSG00000116544 DLGAP3 -311463 sc-eQTL 8.47e-01 -0.0398 0.206 0.054 cDC L2
ENSG00000116560 SFPQ -574958 sc-eQTL 2.87e-01 -0.139 0.13 0.054 cDC L2
ENSG00000142687 KIAA0319L -939763 sc-eQTL 1.23e-01 -0.311 0.2 0.054 cDC L2
ENSG00000146463 ZMYM4 -650522 sc-eQTL 5.26e-01 0.113 0.178 0.054 cDC L2
ENSG00000163866 SMIM12 -241568 sc-eQTL 3.65e-01 -0.177 0.195 0.054 cDC L2
ENSG00000163867 ZMYM6 -413758 sc-eQTL 5.29e-01 0.129 0.204 0.054 cDC L2
ENSG00000197056 ZMYM1 -413985 sc-eQTL 9.33e-02 0.324 0.192 0.054 cDC L2
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 7.23e-01 0.0682 0.193 0.054 cDC L2
ENSG00000239636 AC004865.2 -959542 sc-eQTL 8.33e-01 0.0427 0.202 0.054 cDC L2
ENSG00000243749 TMEM35B -367166 sc-eQTL 3.90e-01 -0.164 0.191 0.054 cDC L2
ENSG00000020129 NCDN -939286 sc-eQTL 9.43e-01 0.0172 0.24 0.055 gdT L2
ENSG00000116544 DLGAP3 -311463 sc-eQTL 2.18e-02 0.53 0.228 0.055 gdT L2
ENSG00000116560 SFPQ -574958 sc-eQTL 7.74e-01 0.044 0.153 0.055 gdT L2
ENSG00000142687 KIAA0319L -939763 sc-eQTL 5.27e-01 0.147 0.232 0.055 gdT L2
ENSG00000146463 ZMYM4 -650522 sc-eQTL 9.50e-01 0.0142 0.224 0.055 gdT L2
ENSG00000163866 SMIM12 -241568 sc-eQTL 3.83e-01 -0.212 0.242 0.055 gdT L2
ENSG00000163867 ZMYM6 -413758 sc-eQTL 7.55e-01 0.0787 0.252 0.055 gdT L2
ENSG00000197056 ZMYM1 -413985 sc-eQTL 3.43e-01 0.214 0.225 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 8.30e-01 0.046 0.214 0.055 gdT L2
ENSG00000239636 AC004865.2 -959542 sc-eQTL 7.63e-01 0.0631 0.209 0.055 gdT L2
ENSG00000243749 TMEM35B -367166 sc-eQTL 2.96e-01 -0.186 0.178 0.055 gdT L2
ENSG00000020129 NCDN -939286 sc-eQTL 7.91e-01 0.0559 0.211 0.059 pDC L2
ENSG00000116544 DLGAP3 -311463 sc-eQTL 8.74e-01 -0.0328 0.206 0.059 pDC L2
ENSG00000116560 SFPQ -574958 sc-eQTL 4.57e-01 0.101 0.135 0.059 pDC L2
ENSG00000142687 KIAA0319L -939763 sc-eQTL 6.74e-01 0.0961 0.228 0.059 pDC L2
ENSG00000146463 ZMYM4 -650522 sc-eQTL 2.02e-01 -0.263 0.205 0.059 pDC L2
ENSG00000163866 SMIM12 -241568 sc-eQTL 7.18e-01 -0.0778 0.215 0.059 pDC L2
ENSG00000163867 ZMYM6 -413758 sc-eQTL 3.05e-02 0.413 0.189 0.059 pDC L2
ENSG00000197056 ZMYM1 -413985 sc-eQTL 8.83e-01 0.0293 0.198 0.059 pDC L2
ENSG00000227409 ZMYM4-AS1 -747890 sc-eQTL 1.18e-01 -0.311 0.198 0.059 pDC L2
ENSG00000239636 AC004865.2 -959542 sc-eQTL 2.52e-01 0.247 0.214 0.059 pDC L2
ENSG00000243749 TMEM35B -367166 sc-eQTL 2.84e-01 -0.189 0.176 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000230163 \N -232507 1.55e-06 2.37e-06 2.5e-07 1.72e-06 4.46e-07 7.89e-07 1.25e-06 3.93e-07 1.73e-06 7.18e-07 1.94e-06 1.13e-06 2.75e-06 5.86e-07 4e-07 9.91e-07 1.13e-06 1.29e-06 5.56e-07 7.64e-07 6.27e-07 1.98e-06 1.42e-06 6.43e-07 2.51e-06 1.07e-06 1.04e-06 1.07e-06 1.7e-06 1.47e-06 7.63e-07 2.7e-07 3.44e-07 7.27e-07 9.1e-07 5.22e-07 7.35e-07 3.37e-07 6.4e-07 2.04e-07 3.03e-07 2.17e-06 4.36e-07 1.68e-07 3.82e-07 3.19e-07 3.34e-07 2.64e-07 2.6e-07