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Genes within 1Mb (chr1:34617367:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -940106 sc-eQTL 8.40e-01 0.0417 0.206 0.052 DC L1
ENSG00000116544 DLGAP3 -312283 sc-eQTL 9.40e-01 -0.0145 0.191 0.052 DC L1
ENSG00000116560 SFPQ -575778 sc-eQTL 8.96e-01 0.0155 0.119 0.052 DC L1
ENSG00000142687 KIAA0319L -940583 sc-eQTL 2.30e-01 -0.239 0.199 0.052 DC L1
ENSG00000146463 ZMYM4 -651342 sc-eQTL 7.36e-01 0.0594 0.176 0.052 DC L1
ENSG00000163866 SMIM12 -242388 sc-eQTL 4.28e-01 -0.149 0.188 0.052 DC L1
ENSG00000163867 ZMYM6 -414578 sc-eQTL 1.29e-01 0.27 0.177 0.052 DC L1
ENSG00000197056 ZMYM1 -414805 sc-eQTL 2.46e-01 0.225 0.193 0.052 DC L1
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 4.91e-01 -0.14 0.203 0.052 DC L1
ENSG00000239636 AC004865.2 -960362 sc-eQTL 6.77e-01 0.0836 0.201 0.052 DC L1
ENSG00000243749 TMEM35B -367986 sc-eQTL 4.04e-01 -0.143 0.171 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -940106 sc-eQTL 4.05e-01 -0.179 0.214 0.05 CD4_CTL L2
ENSG00000116544 DLGAP3 -312283 sc-eQTL 8.20e-01 0.0454 0.199 0.05 CD4_CTL L2
ENSG00000116560 SFPQ -575778 sc-eQTL 3.22e-01 0.142 0.143 0.05 CD4_CTL L2
ENSG00000142687 KIAA0319L -940583 sc-eQTL 6.01e-01 0.114 0.218 0.05 CD4_CTL L2
ENSG00000146463 ZMYM4 -651342 sc-eQTL 8.62e-01 -0.0377 0.216 0.05 CD4_CTL L2
ENSG00000163866 SMIM12 -242388 sc-eQTL 1.65e-01 0.282 0.203 0.05 CD4_CTL L2
ENSG00000163867 ZMYM6 -414578 sc-eQTL 1.20e-01 0.343 0.219 0.05 CD4_CTL L2
ENSG00000197056 ZMYM1 -414805 sc-eQTL 9.29e-01 0.0199 0.223 0.05 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 4.55e-01 -0.15 0.2 0.05 CD4_CTL L2
ENSG00000239636 AC004865.2 -960362 sc-eQTL 6.02e-01 -0.104 0.2 0.05 CD4_CTL L2
ENSG00000243749 TMEM35B -367986 sc-eQTL 9.95e-01 0.00105 0.169 0.05 CD4_CTL L2
ENSG00000020129 NCDN -940106 sc-eQTL 3.51e-01 0.195 0.208 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 -312283 sc-eQTL 9.69e-01 -0.00806 0.205 0.051 CD8_TCM L2
ENSG00000116560 SFPQ -575778 sc-eQTL 6.50e-01 -0.0529 0.117 0.051 CD8_TCM L2
ENSG00000142687 KIAA0319L -940583 sc-eQTL 3.57e-01 -0.173 0.188 0.051 CD8_TCM L2
ENSG00000146463 ZMYM4 -651342 sc-eQTL 7.66e-01 -0.0601 0.201 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 -242388 sc-eQTL 6.57e-01 -0.0889 0.2 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 -414578 sc-eQTL 2.15e-01 0.271 0.218 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 -414805 sc-eQTL 3.77e-01 0.177 0.2 0.051 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 4.88e-01 -0.132 0.189 0.051 CD8_TCM L2
ENSG00000239636 AC004865.2 -960362 sc-eQTL 9.65e-02 0.328 0.196 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B -367986 sc-eQTL 1.50e-01 0.232 0.16 0.051 CD8_TCM L2
ENSG00000020129 NCDN -940106 sc-eQTL 4.44e-01 0.167 0.218 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 -312283 sc-eQTL 8.15e-03 -0.5 0.187 0.05 CD8_TEM L2
ENSG00000116560 SFPQ -575778 sc-eQTL 5.98e-01 0.0638 0.121 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -940583 sc-eQTL 5.36e-01 0.127 0.206 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 -651342 sc-eQTL 5.20e-01 0.138 0.214 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 -242388 sc-eQTL 6.92e-02 -0.384 0.21 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 -414578 sc-eQTL 4.45e-01 -0.161 0.21 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 -414805 sc-eQTL 3.19e-01 0.196 0.196 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 1.07e-01 -0.306 0.189 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -960362 sc-eQTL 1.13e-01 0.318 0.199 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B -367986 sc-eQTL 4.97e-01 -0.103 0.151 0.05 CD8_TEM L2
ENSG00000020129 NCDN -940106 sc-eQTL 3.06e-01 -0.202 0.197 0.05 NK_HLA L2
ENSG00000116544 DLGAP3 -312283 sc-eQTL 7.54e-01 0.0597 0.19 0.05 NK_HLA L2
ENSG00000116560 SFPQ -575778 sc-eQTL 2.36e-01 -0.166 0.14 0.05 NK_HLA L2
ENSG00000142687 KIAA0319L -940583 sc-eQTL 5.82e-01 0.112 0.203 0.05 NK_HLA L2
ENSG00000146463 ZMYM4 -651342 sc-eQTL 3.67e-01 0.174 0.192 0.05 NK_HLA L2
ENSG00000163866 SMIM12 -242388 sc-eQTL 5.64e-01 -0.117 0.202 0.05 NK_HLA L2
ENSG00000163867 ZMYM6 -414578 sc-eQTL 5.08e-02 0.411 0.209 0.05 NK_HLA L2
ENSG00000197056 ZMYM1 -414805 sc-eQTL 7.59e-01 0.0611 0.199 0.05 NK_HLA L2
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 6.65e-02 -0.332 0.18 0.05 NK_HLA L2
ENSG00000239636 AC004865.2 -960362 sc-eQTL 2.04e-01 0.263 0.206 0.05 NK_HLA L2
ENSG00000243749 TMEM35B -367986 sc-eQTL 2.42e-01 0.194 0.166 0.05 NK_HLA L2
ENSG00000020129 NCDN -940106 sc-eQTL 9.52e-01 -0.0118 0.197 0.05 Pro_T L2
ENSG00000116544 DLGAP3 -312283 sc-eQTL 9.56e-01 -0.0101 0.184 0.05 Pro_T L2
ENSG00000116560 SFPQ -575778 sc-eQTL 1.28e-01 0.213 0.139 0.05 Pro_T L2
ENSG00000142687 KIAA0319L -940583 sc-eQTL 6.85e-01 -0.0874 0.215 0.05 Pro_T L2
ENSG00000146463 ZMYM4 -651342 sc-eQTL 1.61e-01 0.293 0.208 0.05 Pro_T L2
ENSG00000163866 SMIM12 -242388 sc-eQTL 7.93e-02 -0.352 0.199 0.05 Pro_T L2
ENSG00000163867 ZMYM6 -414578 sc-eQTL 2.64e-01 0.243 0.217 0.05 Pro_T L2
ENSG00000197056 ZMYM1 -414805 sc-eQTL 2.54e-01 -0.207 0.181 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 6.42e-03 -0.521 0.189 0.05 Pro_T L2
ENSG00000239636 AC004865.2 -960362 sc-eQTL 7.37e-01 -0.0655 0.195 0.05 Pro_T L2
ENSG00000243749 TMEM35B -367986 sc-eQTL 8.26e-01 -0.036 0.164 0.05 Pro_T L2
ENSG00000020129 NCDN -940106 sc-eQTL 6.73e-01 0.0875 0.207 0.054 cDC L2
ENSG00000116544 DLGAP3 -312283 sc-eQTL 8.47e-01 -0.0398 0.206 0.054 cDC L2
ENSG00000116560 SFPQ -575778 sc-eQTL 2.87e-01 -0.139 0.13 0.054 cDC L2
ENSG00000142687 KIAA0319L -940583 sc-eQTL 1.23e-01 -0.311 0.2 0.054 cDC L2
ENSG00000146463 ZMYM4 -651342 sc-eQTL 5.26e-01 0.113 0.178 0.054 cDC L2
ENSG00000163866 SMIM12 -242388 sc-eQTL 3.65e-01 -0.177 0.195 0.054 cDC L2
ENSG00000163867 ZMYM6 -414578 sc-eQTL 5.29e-01 0.129 0.204 0.054 cDC L2
ENSG00000197056 ZMYM1 -414805 sc-eQTL 9.33e-02 0.324 0.192 0.054 cDC L2
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 7.23e-01 0.0682 0.193 0.054 cDC L2
ENSG00000239636 AC004865.2 -960362 sc-eQTL 8.33e-01 0.0427 0.202 0.054 cDC L2
ENSG00000243749 TMEM35B -367986 sc-eQTL 3.90e-01 -0.164 0.191 0.054 cDC L2
ENSG00000020129 NCDN -940106 sc-eQTL 9.43e-01 0.0172 0.24 0.055 gdT L2
ENSG00000116544 DLGAP3 -312283 sc-eQTL 2.18e-02 0.53 0.228 0.055 gdT L2
ENSG00000116560 SFPQ -575778 sc-eQTL 7.74e-01 0.044 0.153 0.055 gdT L2
ENSG00000142687 KIAA0319L -940583 sc-eQTL 5.27e-01 0.147 0.232 0.055 gdT L2
ENSG00000146463 ZMYM4 -651342 sc-eQTL 9.50e-01 0.0142 0.224 0.055 gdT L2
ENSG00000163866 SMIM12 -242388 sc-eQTL 3.83e-01 -0.212 0.242 0.055 gdT L2
ENSG00000163867 ZMYM6 -414578 sc-eQTL 7.55e-01 0.0787 0.252 0.055 gdT L2
ENSG00000197056 ZMYM1 -414805 sc-eQTL 3.43e-01 0.214 0.225 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 8.30e-01 0.046 0.214 0.055 gdT L2
ENSG00000239636 AC004865.2 -960362 sc-eQTL 7.63e-01 0.0631 0.209 0.055 gdT L2
ENSG00000243749 TMEM35B -367986 sc-eQTL 2.96e-01 -0.186 0.178 0.055 gdT L2
ENSG00000020129 NCDN -940106 sc-eQTL 7.91e-01 0.0559 0.211 0.059 pDC L2
ENSG00000116544 DLGAP3 -312283 sc-eQTL 8.74e-01 -0.0328 0.206 0.059 pDC L2
ENSG00000116560 SFPQ -575778 sc-eQTL 4.57e-01 0.101 0.135 0.059 pDC L2
ENSG00000142687 KIAA0319L -940583 sc-eQTL 6.74e-01 0.0961 0.228 0.059 pDC L2
ENSG00000146463 ZMYM4 -651342 sc-eQTL 2.02e-01 -0.263 0.205 0.059 pDC L2
ENSG00000163866 SMIM12 -242388 sc-eQTL 7.18e-01 -0.0778 0.215 0.059 pDC L2
ENSG00000163867 ZMYM6 -414578 sc-eQTL 3.05e-02 0.413 0.189 0.059 pDC L2
ENSG00000197056 ZMYM1 -414805 sc-eQTL 8.83e-01 0.0293 0.198 0.059 pDC L2
ENSG00000227409 ZMYM4-AS1 -748710 sc-eQTL 1.18e-01 -0.311 0.198 0.059 pDC L2
ENSG00000239636 AC004865.2 -960362 sc-eQTL 2.52e-01 0.247 0.214 0.059 pDC L2
ENSG00000243749 TMEM35B -367986 sc-eQTL 2.84e-01 -0.189 0.176 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000230163 \N -233327 1.54e-06 2.11e-06 2.53e-07 1.26e-06 3.82e-07 6.4e-07 1.21e-06 4.34e-07 1.7e-06 6.82e-07 1.97e-06 1.32e-06 2.64e-06 5.4e-07 4.52e-07 1.02e-06 1.12e-06 1.17e-06 6.56e-07 5.06e-07 7.49e-07 2e-06 1.19e-06 6.29e-07 2.48e-06 8.38e-07 1.02e-06 9.33e-07 1.74e-06 1.3e-06 7.63e-07 2.65e-07 2.98e-07 6.21e-07 8.75e-07 6.24e-07 7.4e-07 3.6e-07 5.37e-07 2.08e-07 3.4e-07 2.12e-06 3.51e-07 1.57e-07 3.14e-07 3.22e-07 2.66e-07 2.51e-07 2.04e-07