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Genes within 1Mb (chr1:34188255:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116544 DLGAP3 -741395 sc-eQTL 5.01e-01 -0.125 0.185 0.051 B_Activated L2
ENSG00000134686 PHC2 757203 sc-eQTL 1.92e-01 -0.287 0.22 0.051 B_Activated L2
ENSG00000160094 ZNF362 931763 sc-eQTL 3.26e-01 0.228 0.232 0.051 B_Activated L2
ENSG00000163866 SMIM12 -671500 sc-eQTL 9.05e-01 -0.0287 0.241 0.051 B_Activated L2
ENSG00000163867 ZMYM6 -843690 sc-eQTL 8.21e-01 -0.0544 0.24 0.051 B_Activated L2
ENSG00000197056 ZMYM1 -843917 sc-eQTL 4.30e-01 -0.158 0.199 0.051 B_Activated L2
ENSG00000243749 TMEM35B -797098 sc-eQTL 3.91e-01 0.17 0.198 0.051 B_Activated L2
ENSG00000116544 DLGAP3 -741395 sc-eQTL 8.56e-01 0.0359 0.197 0.052 CD4_CTL L2
ENSG00000134686 PHC2 757203 sc-eQTL 2.63e-01 0.212 0.188 0.052 CD4_CTL L2
ENSG00000160094 ZNF362 931763 sc-eQTL 3.08e-02 0.43 0.198 0.052 CD4_CTL L2
ENSG00000163866 SMIM12 -671500 sc-eQTL 2.17e-01 -0.249 0.201 0.052 CD4_CTL L2
ENSG00000163867 ZMYM6 -843690 sc-eQTL 4.80e-01 -0.155 0.219 0.052 CD4_CTL L2
ENSG00000197056 ZMYM1 -843917 sc-eQTL 6.15e-01 0.111 0.221 0.052 CD4_CTL L2
ENSG00000243749 TMEM35B -797098 sc-eQTL 9.04e-01 -0.0202 0.168 0.052 CD4_CTL L2
ENSG00000116544 DLGAP3 -741395 sc-eQTL 5.84e-02 -0.499 0.261 0.059 PB L2
ENSG00000134686 PHC2 757203 sc-eQTL 3.84e-01 -0.224 0.256 0.059 PB L2
ENSG00000160094 ZNF362 931763 sc-eQTL 5.43e-01 0.162 0.266 0.059 PB L2
ENSG00000163866 SMIM12 -671500 sc-eQTL 5.13e-01 -0.159 0.242 0.059 PB L2
ENSG00000163867 ZMYM6 -843690 sc-eQTL 7.68e-02 -0.505 0.283 0.059 PB L2
ENSG00000197056 ZMYM1 -843917 sc-eQTL 1.08e-01 -0.398 0.246 0.059 PB L2
ENSG00000243749 TMEM35B -797098 sc-eQTL 9.91e-01 0.00273 0.239 0.059 PB L2
ENSG00000116544 DLGAP3 -741395 sc-eQTL 7.05e-01 0.0701 0.185 0.05 Pro_T L2
ENSG00000134686 PHC2 757203 sc-eQTL 3.47e-01 -0.155 0.164 0.05 Pro_T L2
ENSG00000160094 ZNF362 931763 sc-eQTL 4.62e-01 0.143 0.195 0.05 Pro_T L2
ENSG00000163866 SMIM12 -671500 sc-eQTL 4.28e-02 0.407 0.2 0.05 Pro_T L2
ENSG00000163867 ZMYM6 -843690 sc-eQTL 2.66e-01 -0.243 0.218 0.05 Pro_T L2
ENSG00000197056 ZMYM1 -843917 sc-eQTL 3.13e-01 -0.184 0.182 0.05 Pro_T L2
ENSG00000243749 TMEM35B -797098 sc-eQTL 5.03e-01 -0.11 0.164 0.05 Pro_T L2
ENSG00000116544 DLGAP3 -741395 sc-eQTL 8.41e-01 -0.0451 0.224 0.051 cDC L2
ENSG00000134686 PHC2 757203 sc-eQTL 7.23e-01 -0.055 0.155 0.051 cDC L2
ENSG00000160094 ZNF362 931763 sc-eQTL 8.70e-01 -0.0351 0.213 0.051 cDC L2
ENSG00000163866 SMIM12 -671500 sc-eQTL 7.43e-01 -0.0698 0.213 0.051 cDC L2
ENSG00000163867 ZMYM6 -843690 sc-eQTL 2.39e-02 -0.501 0.22 0.051 cDC L2
ENSG00000197056 ZMYM1 -843917 sc-eQTL 7.61e-01 -0.0643 0.211 0.051 cDC L2
ENSG00000243749 TMEM35B -797098 sc-eQTL 7.37e-01 -0.0703 0.209 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000187513 GJA4 -604744 eQTL 0.0486 0.108 0.0546 0.0 0.0 0.0579
ENSG00000225313 AL513327.1 880907 eQTL 0.0257 -0.066 0.0295 0.0015 0.0 0.0579

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000225313 AL513327.1 880907 2.67e-07 1.16e-07 3.59e-08 1.82e-07 9.02e-08 9.87e-08 1.42e-07 5.33e-08 1.41e-07 4.4e-08 1.62e-07 8.14e-08 1.33e-07 6.38e-08 5.55e-08 7.26e-08 3.88e-08 1.14e-07 5.21e-08 4.03e-08 1.04e-07 1.26e-07 1.32e-07 4.26e-08 1.32e-07 1.14e-07 1.12e-07 9.32e-08 1.03e-07 1.12e-07 9.91e-08 4.03e-08 3.09e-08 8.82e-08 8.93e-08 3.87e-08 5.01e-08 9.55e-08 7.23e-08 3.18e-08 4.51e-08 1.31e-07 3.91e-08 1.76e-08 6.92e-08 1.67e-08 1.26e-07 4.04e-09 4.73e-08