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Genes within 1Mb (chr1:34089786:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116525 TRIM62 907727 sc-eQTL 6.08e-01 -0.101 0.197 0.05 CD4_CTL L2
ENSG00000116544 DLGAP3 -839864 sc-eQTL 2.18e-01 -0.239 0.194 0.05 CD4_CTL L2
ENSG00000134686 PHC2 658734 sc-eQTL 6.56e-01 -0.0831 0.186 0.05 CD4_CTL L2
ENSG00000160094 ZNF362 833294 sc-eQTL 6.00e-01 -0.104 0.197 0.05 CD4_CTL L2
ENSG00000163866 SMIM12 -769969 sc-eQTL 3.29e-01 -0.194 0.199 0.05 CD4_CTL L2
ENSG00000163867 ZMYM6 -942159 sc-eQTL 5.38e-01 -0.133 0.215 0.05 CD4_CTL L2
ENSG00000197056 ZMYM1 -942386 sc-eQTL 9.70e-01 -0.00821 0.218 0.05 CD4_CTL L2
ENSG00000243749 TMEM35B -895567 sc-eQTL 7.92e-01 -0.0436 0.165 0.05 CD4_CTL L2
ENSG00000116525 TRIM62 907727 sc-eQTL 8.90e-01 -0.0289 0.209 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 -839864 sc-eQTL 4.22e-02 -0.401 0.196 0.051 CD8_TCM L2
ENSG00000134686 PHC2 658734 sc-eQTL 7.73e-01 -0.0469 0.162 0.051 CD8_TCM L2
ENSG00000160094 ZNF362 833294 sc-eQTL 1.58e-01 -0.274 0.193 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 -769969 sc-eQTL 9.77e-01 0.00557 0.193 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 -942159 sc-eQTL 4.11e-01 0.173 0.211 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 -942386 sc-eQTL 1.26e-01 0.295 0.192 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B -895567 sc-eQTL 2.16e-01 0.192 0.155 0.051 CD8_TCM L2
ENSG00000116525 TRIM62 907727 sc-eQTL 8.80e-01 0.0304 0.201 0.051 cDC L2
ENSG00000116544 DLGAP3 -839864 sc-eQTL 4.33e-01 0.157 0.199 0.051 cDC L2
ENSG00000134686 PHC2 658734 sc-eQTL 3.12e-01 -0.14 0.138 0.051 cDC L2
ENSG00000160094 ZNF362 833294 sc-eQTL 5.83e-01 -0.104 0.19 0.051 cDC L2
ENSG00000163866 SMIM12 -769969 sc-eQTL 7.37e-01 0.0637 0.189 0.051 cDC L2
ENSG00000163867 ZMYM6 -942159 sc-eQTL 3.92e-01 0.17 0.198 0.051 cDC L2
ENSG00000197056 ZMYM1 -942386 sc-eQTL 6.96e-01 0.0734 0.187 0.051 cDC L2
ENSG00000243749 TMEM35B -895567 sc-eQTL 7.72e-01 0.0538 0.185 0.051 cDC L2
ENSG00000116525 TRIM62 907727 sc-eQTL 4.42e-01 -0.195 0.253 0.052 gdT L2
ENSG00000116544 DLGAP3 -839864 sc-eQTL 1.86e-01 0.319 0.24 0.052 gdT L2
ENSG00000134686 PHC2 658734 sc-eQTL 9.48e-01 -0.0138 0.212 0.052 gdT L2
ENSG00000160094 ZNF362 833294 sc-eQTL 9.71e-01 -0.00902 0.246 0.052 gdT L2
ENSG00000163866 SMIM12 -769969 sc-eQTL 8.64e-01 0.0432 0.252 0.052 gdT L2
ENSG00000163867 ZMYM6 -942159 sc-eQTL 5.93e-01 -0.14 0.261 0.052 gdT L2
ENSG00000197056 ZMYM1 -942386 sc-eQTL 3.53e-01 0.218 0.234 0.052 gdT L2
ENSG00000243749 TMEM35B -895567 sc-eQTL 8.76e-01 0.0289 0.185 0.052 gdT L2
ENSG00000116525 TRIM62 907727 sc-eQTL 8.02e-01 0.049 0.196 0.059 pDC L2
ENSG00000116544 DLGAP3 -839864 sc-eQTL 5.01e-01 -0.13 0.192 0.059 pDC L2
ENSG00000134686 PHC2 658734 sc-eQTL 4.89e-02 -0.312 0.157 0.059 pDC L2
ENSG00000160094 ZNF362 833294 sc-eQTL 5.32e-01 0.107 0.171 0.059 pDC L2
ENSG00000163866 SMIM12 -769969 sc-eQTL 3.82e-01 -0.176 0.2 0.059 pDC L2
ENSG00000163867 ZMYM6 -942159 sc-eQTL 5.20e-01 -0.115 0.179 0.059 pDC L2
ENSG00000197056 ZMYM1 -942386 sc-eQTL 3.57e-01 -0.17 0.185 0.059 pDC L2
ENSG00000243749 TMEM35B -895567 sc-eQTL 3.45e-01 0.155 0.164 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116525 \N 907727 2.64e-07 1.11e-07 3.62e-08 1.79e-07 9.65e-08 9.3e-08 1.42e-07 5.35e-08 1.42e-07 4.24e-08 1.63e-07 8.02e-08 1.26e-07 6.21e-08 5.53e-08 7.89e-08 4.63e-08 1.1e-07 5.19e-08 3.88e-08 1.05e-07 1.3e-07 1.3e-07 4.67e-08 1.31e-07 1.15e-07 1.12e-07 8.7e-08 9.97e-08 1.1e-07 9.58e-08 4.03e-08 2.74e-08 8.25e-08 9.15e-08 3.9e-08 4.51e-08 9.25e-08 7.58e-08 3.18e-08 3.43e-08 1.37e-07 4.04e-08 2.63e-08 7.79e-08 1.72e-08 1.27e-07 4.14e-09 4.73e-08
ENSG00000184389 \N 768688 2.69e-07 1.3e-07 3.72e-08 1.82e-07 8.92e-08 9.87e-08 1.38e-07 5.33e-08 1.41e-07 4.4e-08 1.59e-07 7.88e-08 1.41e-07 6.21e-08 5.99e-08 7.26e-08 3.88e-08 1.14e-07 5.19e-08 4.2e-08 1.04e-07 1.26e-07 1.32e-07 4.13e-08 1.33e-07 1.19e-07 1.11e-07 9.15e-08 1.02e-07 1.12e-07 9.73e-08 3.7e-08 3.09e-08 8.82e-08 8.98e-08 3.97e-08 4.89e-08 9.49e-08 6.78e-08 3.98e-08 4.36e-08 1.33e-07 4.19e-08 1.38e-08 5.87e-08 1.68e-08 1.25e-07 3.95e-09 4.81e-08