Genes within 1Mb (chr1:32828826:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000004455 AK2 -252170 sc-eQTL 3.26e-02 -0.462 0.213 0.059 PB L2
ENSG00000025800 KPNA6 720770 sc-eQTL 6.70e-01 -0.104 0.244 0.059 PB L2
ENSG00000084623 EIF3I 606898 sc-eQTL 7.55e-01 -0.045 0.144 0.059 PB L2
ENSG00000084652 TXLNA 649151 sc-eQTL 3.22e-01 -0.189 0.19 0.059 PB L2
ENSG00000116478 HDAC1 536743 sc-eQTL 2.29e-03 0.662 0.212 0.059 PB L2
ENSG00000116497 S100PBP 12059 sc-eQTL 2.10e-01 0.296 0.234 0.059 PB L2
ENSG00000116514 RNF19B -135859 sc-eQTL 5.30e-01 -0.155 0.246 0.059 PB L2
ENSG00000116525 TRIM62 -353233 sc-eQTL 3.68e-01 0.218 0.241 0.059 PB L2
ENSG00000121774 KHDRBS1 814958 sc-eQTL 1.06e-02 -0.502 0.193 0.059 PB L2
ENSG00000121775 TMEM39B 756795 sc-eQTL 6.64e-03 -0.613 0.222 0.059 PB L2
ENSG00000134684 YARS 10673 sc-eQTL 2.14e-01 0.216 0.173 0.059 PB L2
ENSG00000134686 PHC2 -602226 sc-eQTL 7.78e-01 0.0684 0.242 0.059 PB L2
ENSG00000160050 CCDC28B 628440 sc-eQTL 3.23e-01 0.215 0.217 0.059 PB L2
ENSG00000160055 TMEM234 606467 sc-eQTL 4.79e-01 0.178 0.25 0.059 PB L2
ENSG00000160058 BSDC1 434095 sc-eQTL 9.44e-01 0.0193 0.274 0.059 PB L2
ENSG00000160094 ZNF362 -427666 sc-eQTL 9.75e-01 -0.00784 0.251 0.059 PB L2
ENSG00000162520 SYNC 125230 sc-eQTL 9.63e-01 0.0093 0.199 0.059 PB L2
ENSG00000162521 RBBP4 177684 sc-eQTL 2.19e-01 0.215 0.173 0.059 PB L2
ENSG00000175130 MARCKSL1 492593 sc-eQTL 1.66e-01 -0.25 0.179 0.059 PB L2
ENSG00000176261 ZBTB8OS 177923 sc-eQTL 7.53e-01 0.0459 0.145 0.059 PB L2
ENSG00000182866 LCK 577587 sc-eQTL 1.20e-01 0.352 0.225 0.059 PB L2
ENSG00000184007 PTP4A2 883970 sc-eQTL 5.70e-01 -0.0887 0.156 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116497 S100PBP 12059 eQTL 0.553 -0.0165 0.0279 0.00124 0.0 0.0579
ENSG00000121775 TMEM39B 756795 eQTL 2.30e-02 0.0977 0.0429 0.00121 0.0 0.0579
ENSG00000134684 YARS 10673 pQTL 0.0071 0.0695 0.0258 0.0 0.00133 0.0582
ENSG00000134686 PHC2 -602226 eQTL 0.0182 -0.0413 0.0175 0.00129 0.0 0.0579
ENSG00000160094 ZNF362 -427666 eQTL 0.0101 -0.0959 0.0372 0.0 0.0 0.0579
ENSG00000160097 FNDC5 -43656 eQTL 0.0101 0.215 0.0833 0.00339 0.0 0.0579
ENSG00000162520 SYNC 125230 eQTL 0.124 -0.102 0.0662 0.00164 0.0 0.0579
ENSG00000184389 A3GALT2 -492272 eQTL 0.00449 0.177 0.0622 0.0 0.0 0.0579
ENSG00000278997 AL662907.1 -314404 eQTL 0.00614 0.187 0.0682 0.0 0.0 0.0579
ENSG00000279179 AL662907.2 -334025 eQTL 0.00173 -0.122 0.0388 0.00198 0.0 0.0579


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000160094 ZNF362 -427666 2.67e-07 1.34e-07 5.35e-08 2.53e-07 9.25e-08 9.9e-08 1.6e-07 5.4e-08 1.45e-07 5.42e-08 1.73e-07 8.59e-08 1.69e-07 7.64e-08 6.12e-08 7.37e-08 4.12e-08 1.33e-07 5.75e-08 4.8e-08 1.21e-07 1.23e-07 1.44e-07 2.64e-08 1.65e-07 1.21e-07 1.07e-07 9.92e-08 1.16e-07 1.03e-07 1.06e-07 3.9e-08 3.66e-08 9.8e-08 5.24e-08 3.04e-08 4.28e-08 8.72e-08 6.59e-08 5.35e-08 5.13e-08 1.33e-07 5.21e-08 5.68e-09 3.07e-08 1.86e-08 1.21e-07 1.88e-09 4.8e-08
ENSG00000162526 \N 477305 2.61e-07 1.19e-07 4.47e-08 2.31e-07 9.01e-08 9.61e-08 1.44e-07 5.33e-08 1.44e-07 4.57e-08 1.57e-07 7.75e-08 1.41e-07 6.76e-08 5.99e-08 7.5e-08 3.87e-08 1.21e-07 5.36e-08 4.1e-08 1.04e-07 1.28e-07 1.32e-07 3.68e-08 1.4e-07 1.16e-07 1.08e-07 9.57e-08 1.05e-07 1.12e-07 9.64e-08 2.9e-08 3.3e-08 8.23e-08 3.81e-08 3.94e-08 5.45e-08 9.23e-08 7.2e-08 4.47e-08 4.41e-08 1.35e-07 4.33e-08 1.84e-08 4.25e-08 1.83e-08 1.22e-07 3.89e-09 4.9e-08