logo

Genes within 1Mb (chr1:32435718:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000004455 AK2 -645278 sc-eQTL 3.08e-01 0.187 0.183 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 327662 sc-eQTL 9.05e-01 -0.0242 0.202 0.05 CD4_CTL L2
ENSG00000084623 EIF3I 213790 sc-eQTL 8.10e-02 -0.298 0.17 0.05 CD4_CTL L2
ENSG00000084652 TXLNA 256043 sc-eQTL 9.52e-01 0.011 0.182 0.05 CD4_CTL L2
ENSG00000116478 HDAC1 143635 sc-eQTL 9.91e-01 -0.00207 0.178 0.05 CD4_CTL L2
ENSG00000116497 S100PBP -381049 sc-eQTL 8.41e-02 -0.317 0.182 0.05 CD4_CTL L2
ENSG00000116514 RNF19B -528967 sc-eQTL 7.42e-01 -0.0586 0.178 0.05 CD4_CTL L2
ENSG00000116525 TRIM62 -746341 sc-eQTL 3.58e-02 -0.376 0.178 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 421850 sc-eQTL 4.30e-02 0.314 0.154 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B 363687 sc-eQTL 2.94e-01 0.202 0.192 0.05 CD4_CTL L2
ENSG00000134684 YARS -382435 sc-eQTL 9.58e-02 0.298 0.178 0.05 CD4_CTL L2
ENSG00000134686 PHC2 -995334 sc-eQTL 2.53e-01 -0.194 0.17 0.05 CD4_CTL L2
ENSG00000142920 AZIN2 -645386 sc-eQTL 8.82e-01 -0.026 0.175 0.05 CD4_CTL L2
ENSG00000160050 CCDC28B 235332 sc-eQTL 7.90e-01 0.0484 0.182 0.05 CD4_CTL L2
ENSG00000160055 TMEM234 213359 sc-eQTL 8.83e-01 0.0288 0.196 0.05 CD4_CTL L2
ENSG00000160058 BSDC1 40987 sc-eQTL 5.00e-01 -0.127 0.188 0.05 CD4_CTL L2
ENSG00000160094 ZNF362 -820774 sc-eQTL 1.04e-01 -0.293 0.179 0.05 CD4_CTL L2
ENSG00000162517 PEF1 790822 sc-eQTL 2.38e-02 0.376 0.165 0.05 CD4_CTL L2
ENSG00000162520 SYNC -267878 sc-eQTL 5.70e-01 0.11 0.194 0.05 CD4_CTL L2
ENSG00000162521 RBBP4 -215424 sc-eQTL 7.37e-02 -0.311 0.173 0.05 CD4_CTL L2
ENSG00000175130 MARCKSL1 99485 sc-eQTL 3.35e-01 0.177 0.183 0.05 CD4_CTL L2
ENSG00000176261 ZBTB8OS -215185 sc-eQTL 7.13e-01 0.0687 0.187 0.05 CD4_CTL L2
ENSG00000182866 LCK 184479 sc-eQTL 4.70e-01 -0.0932 0.129 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 490862 sc-eQTL 8.38e-01 -0.0212 0.104 0.05 CD4_CTL L2
ENSG00000225828 FAM229A 71440 sc-eQTL 9.53e-01 -0.0101 0.171 0.05 CD4_CTL L2
ENSG00000004455 AK2 -645278 sc-eQTL 7.38e-01 0.0645 0.193 0.05 NK_HLA L2
ENSG00000025800 KPNA6 327662 sc-eQTL 3.30e-01 -0.194 0.199 0.05 NK_HLA L2
ENSG00000084623 EIF3I 213790 sc-eQTL 9.12e-01 -0.0223 0.202 0.05 NK_HLA L2
ENSG00000084652 TXLNA 256043 sc-eQTL 8.62e-01 -0.0324 0.187 0.05 NK_HLA L2
ENSG00000116478 HDAC1 143635 sc-eQTL 8.91e-01 0.0247 0.18 0.05 NK_HLA L2
ENSG00000116497 S100PBP -381049 sc-eQTL 9.79e-01 -0.00496 0.185 0.05 NK_HLA L2
ENSG00000116514 RNF19B -528967 sc-eQTL 8.04e-02 -0.323 0.184 0.05 NK_HLA L2
ENSG00000116525 TRIM62 -746341 sc-eQTL 6.26e-01 0.0953 0.195 0.05 NK_HLA L2
ENSG00000121753 ADGRB2 670825 sc-eQTL 9.33e-01 -0.0137 0.163 0.05 NK_HLA L2
ENSG00000121774 KHDRBS1 421850 sc-eQTL 7.62e-01 0.0512 0.169 0.05 NK_HLA L2
ENSG00000121775 TMEM39B 363687 sc-eQTL 9.88e-01 -0.00299 0.203 0.05 NK_HLA L2
ENSG00000134684 YARS -382435 sc-eQTL 3.51e-01 -0.192 0.205 0.05 NK_HLA L2
ENSG00000134686 PHC2 -995334 sc-eQTL 5.34e-01 0.106 0.17 0.05 NK_HLA L2
ENSG00000160050 CCDC28B 235332 sc-eQTL 4.08e-01 0.143 0.172 0.05 NK_HLA L2
ENSG00000160055 TMEM234 213359 sc-eQTL 4.77e-01 -0.14 0.196 0.05 NK_HLA L2
ENSG00000160058 BSDC1 40987 sc-eQTL 1.83e-02 0.47 0.198 0.05 NK_HLA L2
ENSG00000160094 ZNF362 -820774 sc-eQTL 2.03e-01 -0.248 0.194 0.05 NK_HLA L2
ENSG00000162517 PEF1 790822 sc-eQTL 3.60e-01 0.176 0.192 0.05 NK_HLA L2
ENSG00000162520 SYNC -267878 sc-eQTL 4.13e-01 -0.162 0.197 0.05 NK_HLA L2
ENSG00000162521 RBBP4 -215424 sc-eQTL 1.88e-02 -0.453 0.191 0.05 NK_HLA L2
ENSG00000175130 MARCKSL1 99485 sc-eQTL 7.79e-01 -0.042 0.149 0.05 NK_HLA L2
ENSG00000176261 ZBTB8OS -215185 sc-eQTL 7.47e-01 -0.0652 0.202 0.05 NK_HLA L2
ENSG00000182866 LCK 184479 sc-eQTL 4.76e-02 0.27 0.136 0.05 NK_HLA L2
ENSG00000184007 PTP4A2 490862 sc-eQTL 8.35e-01 0.0321 0.154 0.05 NK_HLA L2
ENSG00000004455 AK2 -645278 sc-eQTL 1.79e-02 0.436 0.183 0.051 cDC L2
ENSG00000025800 KPNA6 327662 sc-eQTL 6.89e-01 0.08 0.2 0.051 cDC L2
ENSG00000084623 EIF3I 213790 sc-eQTL 3.64e-01 -0.146 0.16 0.051 cDC L2
ENSG00000084652 TXLNA 256043 sc-eQTL 4.45e-01 0.159 0.208 0.051 cDC L2
ENSG00000116478 HDAC1 143635 sc-eQTL 7.79e-01 0.0514 0.183 0.051 cDC L2
ENSG00000116497 S100PBP -381049 sc-eQTL 2.21e-01 0.24 0.195 0.051 cDC L2
ENSG00000116514 RNF19B -528967 sc-eQTL 3.58e-01 0.156 0.169 0.051 cDC L2
ENSG00000116525 TRIM62 -746341 sc-eQTL 5.87e-01 0.105 0.192 0.051 cDC L2
ENSG00000121774 KHDRBS1 421850 sc-eQTL 8.69e-01 0.0249 0.151 0.051 cDC L2
ENSG00000121775 TMEM39B 363687 sc-eQTL 5.86e-01 -0.0977 0.179 0.051 cDC L2
ENSG00000134684 YARS -382435 sc-eQTL 7.72e-01 -0.0576 0.198 0.051 cDC L2
ENSG00000134686 PHC2 -995334 sc-eQTL 1.54e-01 -0.188 0.132 0.051 cDC L2
ENSG00000142920 AZIN2 -645386 sc-eQTL 3.79e-01 0.0917 0.104 0.051 cDC L2
ENSG00000160050 CCDC28B 235332 sc-eQTL 5.04e-01 0.133 0.198 0.051 cDC L2
ENSG00000160055 TMEM234 213359 sc-eQTL 4.44e-01 -0.141 0.183 0.051 cDC L2
ENSG00000160058 BSDC1 40987 sc-eQTL 7.11e-01 -0.0743 0.2 0.051 cDC L2
ENSG00000160062 ZBTB8A -103709 sc-eQTL 8.01e-02 -0.264 0.15 0.051 cDC L2
ENSG00000160094 ZNF362 -820774 sc-eQTL 3.56e-01 -0.168 0.181 0.051 cDC L2
ENSG00000162517 PEF1 790822 sc-eQTL 4.54e-03 0.508 0.177 0.051 cDC L2
ENSG00000162520 SYNC -267878 sc-eQTL 9.72e-01 -0.00658 0.19 0.051 cDC L2
ENSG00000162521 RBBP4 -215424 sc-eQTL 2.28e-01 -0.197 0.163 0.051 cDC L2
ENSG00000162522 KIAA1522 -306112 sc-eQTL 4.58e-03 -0.515 0.179 0.051 cDC L2
ENSG00000175130 MARCKSL1 99485 sc-eQTL 7.80e-02 -0.222 0.125 0.051 cDC L2
ENSG00000176261 ZBTB8OS -215185 sc-eQTL 9.52e-01 -0.0107 0.176 0.051 cDC L2
ENSG00000182866 LCK 184479 sc-eQTL 9.97e-01 0.000589 0.141 0.051 cDC L2
ENSG00000184007 PTP4A2 490862 sc-eQTL 7.39e-02 -0.27 0.15 0.051 cDC L2
ENSG00000225828 FAM229A 71440 sc-eQTL 8.52e-01 -0.0348 0.186 0.051 cDC L2
ENSG00000284543 LINC01226 929492 sc-eQTL 8.10e-01 0.0379 0.158 0.051 cDC L2
ENSG00000004455 AK2 -645278 sc-eQTL 4.96e-02 0.376 0.19 0.056 pDC L2
ENSG00000025800 KPNA6 327662 sc-eQTL 3.40e-01 -0.17 0.177 0.056 pDC L2
ENSG00000084623 EIF3I 213790 sc-eQTL 5.43e-01 -0.104 0.171 0.056 pDC L2
ENSG00000084652 TXLNA 256043 sc-eQTL 1.66e-01 -0.242 0.174 0.056 pDC L2
ENSG00000116478 HDAC1 143635 sc-eQTL 5.58e-01 -0.106 0.18 0.056 pDC L2
ENSG00000116497 S100PBP -381049 sc-eQTL 5.78e-01 -0.0883 0.158 0.056 pDC L2
ENSG00000116514 RNF19B -528967 sc-eQTL 4.51e-01 -0.146 0.193 0.056 pDC L2
ENSG00000116525 TRIM62 -746341 sc-eQTL 9.82e-01 -0.00443 0.192 0.056 pDC L2
ENSG00000121774 KHDRBS1 421850 sc-eQTL 5.11e-01 -0.103 0.157 0.056 pDC L2
ENSG00000121775 TMEM39B 363687 sc-eQTL 2.71e-01 -0.184 0.167 0.056 pDC L2
ENSG00000134684 YARS -382435 sc-eQTL 1.82e-01 0.259 0.193 0.056 pDC L2
ENSG00000134686 PHC2 -995334 sc-eQTL 8.64e-01 0.0267 0.156 0.056 pDC L2
ENSG00000142920 AZIN2 -645386 sc-eQTL 9.55e-01 0.00764 0.135 0.056 pDC L2
ENSG00000160050 CCDC28B 235332 sc-eQTL 7.59e-03 0.444 0.164 0.056 pDC L2
ENSG00000160055 TMEM234 213359 sc-eQTL 7.90e-01 0.0515 0.193 0.056 pDC L2
ENSG00000160058 BSDC1 40987 sc-eQTL 9.31e-01 -0.0161 0.185 0.056 pDC L2
ENSG00000160062 ZBTB8A -103709 sc-eQTL 1.93e-01 0.214 0.164 0.056 pDC L2
ENSG00000160094 ZNF362 -820774 sc-eQTL 4.91e-01 0.116 0.168 0.056 pDC L2
ENSG00000162517 PEF1 790822 sc-eQTL 3.74e-01 0.178 0.2 0.056 pDC L2
ENSG00000162520 SYNC -267878 sc-eQTL 4.91e-01 -0.12 0.174 0.056 pDC L2
ENSG00000162521 RBBP4 -215424 sc-eQTL 6.80e-01 -0.0523 0.126 0.056 pDC L2
ENSG00000162522 KIAA1522 -306112 sc-eQTL 6.79e-01 -0.0732 0.176 0.056 pDC L2
ENSG00000175130 MARCKSL1 99485 sc-eQTL 7.62e-01 0.0349 0.115 0.056 pDC L2
ENSG00000176261 ZBTB8OS -215185 sc-eQTL 8.68e-01 -0.0307 0.185 0.056 pDC L2
ENSG00000182866 LCK 184479 sc-eQTL 7.20e-01 -0.0511 0.142 0.056 pDC L2
ENSG00000184007 PTP4A2 490862 sc-eQTL 3.82e-01 -0.132 0.15 0.056 pDC L2
ENSG00000225828 FAM229A 71440 sc-eQTL 2.84e-01 -0.196 0.183 0.056 pDC L2
ENSG00000284543 LINC01226 929492 sc-eQTL 8.60e-01 0.0257 0.146 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116497 S100PBP -381049 eQTL 0.00294 -0.0867 0.0291 0.0 0.0 0.0471
ENSG00000142920 AZIN2 -645386 eQTL 0.0203 0.108 0.0465 0.0 0.0 0.0471
ENSG00000162521 RBBP4 -215424 eQTL 0.016 0.0721 0.0299 0.0 0.0 0.0471
ENSG00000183615 FAM167B 188496 eQTL 1.53e-06 0.378 0.0782 0.0 0.0 0.0471
ENSG00000220785 MTMR9LP 194098 eQTL 4.25e-12 0.605 0.0862 0.0 0.0 0.0471

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134684 \N -382435 1.22e-06 9.37e-07 3.06e-07 3.44e-07 2.05e-07 3.22e-07 8.7e-07 2.88e-07 9.89e-07 2.77e-07 1.26e-06 5.75e-07 1.46e-06 2.4e-07 4.17e-07 6.36e-07 7.39e-07 5.33e-07 4.24e-07 4.19e-07 2.97e-07 8.19e-07 6.11e-07 4.66e-07 1.79e-06 2.94e-07 6.03e-07 5.31e-07 8.24e-07 1.02e-06 5.1e-07 3.67e-08 1.72e-07 3.03e-07 3.29e-07 3.71e-07 3.77e-07 1.39e-07 1.23e-07 3.03e-08 2.76e-07 1.3e-06 6.17e-08 5.7e-08 1.84e-07 5.94e-08 1.68e-07 8.49e-08 9.13e-08
ENSG00000142920 AZIN2 -645386 3.92e-07 2.4e-07 7.92e-08 2.49e-07 1.07e-07 8.85e-08 3.25e-07 6.72e-08 2.04e-07 1.15e-07 2.68e-07 1.72e-07 3.6e-07 8.26e-08 7.35e-08 1.26e-07 6.63e-08 2.66e-07 8.93e-08 8e-08 1.33e-07 2.15e-07 2e-07 4.91e-08 3.41e-07 1.86e-07 1.39e-07 1.61e-07 1.54e-07 2.02e-07 1.71e-07 4.78e-08 4.87e-08 9.98e-08 7.44e-08 5.04e-08 5.62e-08 6.66e-08 5.59e-08 8.09e-08 3.2e-08 2.71e-07 3.53e-08 1.8e-08 7.89e-08 9.44e-09 7.8e-08 0.0 4.59e-08
ENSG00000162521 RBBP4 -215424 1.87e-06 2.43e-06 2.7e-07 1.51e-06 4.62e-07 7.29e-07 1.3e-06 5.96e-07 1.61e-06 7.24e-07 1.93e-06 1.45e-06 3.36e-06 1.04e-06 4.61e-07 1.45e-06 9.73e-07 1.57e-06 7.13e-07 9.52e-07 9e-07 2.25e-06 1.82e-06 1.04e-06 3.07e-06 1.22e-06 1.22e-06 1.46e-06 1.81e-06 1.81e-06 1.18e-06 2.48e-07 5.85e-07 1e-06 9e-07 9.86e-07 8.32e-07 4.74e-07 7.18e-07 2.76e-07 1.51e-07 3e-06 3.86e-07 1.86e-07 3.27e-07 3.14e-07 4.08e-07 2.18e-07 2.12e-07
ENSG00000183615 FAM167B 188496 2.62e-06 2.61e-06 4.23e-07 1.85e-06 6.09e-07 8.21e-07 1.98e-06 6.93e-07 1.88e-06 9.91e-07 2.52e-06 1.35e-06 3.55e-06 1.35e-06 8.73e-07 1.79e-06 1.17e-06 2.24e-06 1.38e-06 1.36e-06 1.34e-06 3.12e-06 2.47e-06 1.21e-06 4.02e-06 1.06e-06 1.39e-06 1.8e-06 2.39e-06 2.37e-06 1.81e-06 3.11e-07 6.2e-07 1.23e-06 1.27e-06 8.95e-07 8.9e-07 4.65e-07 1.12e-06 3.79e-07 2.23e-07 3.42e-06 5.37e-07 1.62e-07 3.46e-07 3.14e-07 6.75e-07 1.82e-07 1.58e-07
ENSG00000220785 MTMR9LP 194098 2.61e-06 2.57e-06 3.61e-07 1.88e-06 6.13e-07 7.84e-07 1.82e-06 6.48e-07 1.85e-06 9.02e-07 2.5e-06 1.26e-06 3.49e-06 1.35e-06 7.39e-07 1.68e-06 1.06e-06 2.24e-06 1.22e-06 1.27e-06 1.16e-06 3.02e-06 2.32e-06 9.71e-07 3.8e-06 1.23e-06 1.31e-06 1.8e-06 2.07e-06 2.22e-06 1.81e-06 3.23e-07 6.12e-07 1.21e-06 1.02e-06 9.4e-07 8.05e-07 4.58e-07 1.05e-06 3.78e-07 2.54e-07 3.43e-06 5.13e-07 1.87e-07 3.27e-07 3.24e-07 6.08e-07 2.46e-07 1.56e-07