logo

Genes within 1Mb (chr1:32435702:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000004455 AK2 -645294 sc-eQTL 3.08e-01 0.187 0.183 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 327646 sc-eQTL 9.05e-01 -0.0242 0.202 0.05 CD4_CTL L2
ENSG00000084623 EIF3I 213774 sc-eQTL 8.10e-02 -0.298 0.17 0.05 CD4_CTL L2
ENSG00000084652 TXLNA 256027 sc-eQTL 9.52e-01 0.011 0.182 0.05 CD4_CTL L2
ENSG00000116478 HDAC1 143619 sc-eQTL 9.91e-01 -0.00207 0.178 0.05 CD4_CTL L2
ENSG00000116497 S100PBP -381065 sc-eQTL 8.41e-02 -0.317 0.182 0.05 CD4_CTL L2
ENSG00000116514 RNF19B -528983 sc-eQTL 7.42e-01 -0.0586 0.178 0.05 CD4_CTL L2
ENSG00000116525 TRIM62 -746357 sc-eQTL 3.58e-02 -0.376 0.178 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 421834 sc-eQTL 4.30e-02 0.314 0.154 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B 363671 sc-eQTL 2.94e-01 0.202 0.192 0.05 CD4_CTL L2
ENSG00000134684 YARS -382451 sc-eQTL 9.58e-02 0.298 0.178 0.05 CD4_CTL L2
ENSG00000134686 PHC2 -995350 sc-eQTL 2.53e-01 -0.194 0.17 0.05 CD4_CTL L2
ENSG00000142920 AZIN2 -645402 sc-eQTL 8.82e-01 -0.026 0.175 0.05 CD4_CTL L2
ENSG00000160050 CCDC28B 235316 sc-eQTL 7.90e-01 0.0484 0.182 0.05 CD4_CTL L2
ENSG00000160055 TMEM234 213343 sc-eQTL 8.83e-01 0.0288 0.196 0.05 CD4_CTL L2
ENSG00000160058 BSDC1 40971 sc-eQTL 5.00e-01 -0.127 0.188 0.05 CD4_CTL L2
ENSG00000160094 ZNF362 -820790 sc-eQTL 1.04e-01 -0.293 0.179 0.05 CD4_CTL L2
ENSG00000162517 PEF1 790806 sc-eQTL 2.38e-02 0.376 0.165 0.05 CD4_CTL L2
ENSG00000162520 SYNC -267894 sc-eQTL 5.70e-01 0.11 0.194 0.05 CD4_CTL L2
ENSG00000162521 RBBP4 -215440 sc-eQTL 7.37e-02 -0.311 0.173 0.05 CD4_CTL L2
ENSG00000175130 MARCKSL1 99469 sc-eQTL 3.35e-01 0.177 0.183 0.05 CD4_CTL L2
ENSG00000176261 ZBTB8OS -215201 sc-eQTL 7.13e-01 0.0687 0.187 0.05 CD4_CTL L2
ENSG00000182866 LCK 184463 sc-eQTL 4.70e-01 -0.0932 0.129 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 490846 sc-eQTL 8.38e-01 -0.0212 0.104 0.05 CD4_CTL L2
ENSG00000225828 FAM229A 71424 sc-eQTL 9.53e-01 -0.0101 0.171 0.05 CD4_CTL L2
ENSG00000004455 AK2 -645294 sc-eQTL 7.38e-01 0.0645 0.193 0.05 NK_HLA L2
ENSG00000025800 KPNA6 327646 sc-eQTL 3.30e-01 -0.194 0.199 0.05 NK_HLA L2
ENSG00000084623 EIF3I 213774 sc-eQTL 9.12e-01 -0.0223 0.202 0.05 NK_HLA L2
ENSG00000084652 TXLNA 256027 sc-eQTL 8.62e-01 -0.0324 0.187 0.05 NK_HLA L2
ENSG00000116478 HDAC1 143619 sc-eQTL 8.91e-01 0.0247 0.18 0.05 NK_HLA L2
ENSG00000116497 S100PBP -381065 sc-eQTL 9.79e-01 -0.00496 0.185 0.05 NK_HLA L2
ENSG00000116514 RNF19B -528983 sc-eQTL 8.04e-02 -0.323 0.184 0.05 NK_HLA L2
ENSG00000116525 TRIM62 -746357 sc-eQTL 6.26e-01 0.0953 0.195 0.05 NK_HLA L2
ENSG00000121753 ADGRB2 670809 sc-eQTL 9.33e-01 -0.0137 0.163 0.05 NK_HLA L2
ENSG00000121774 KHDRBS1 421834 sc-eQTL 7.62e-01 0.0512 0.169 0.05 NK_HLA L2
ENSG00000121775 TMEM39B 363671 sc-eQTL 9.88e-01 -0.00299 0.203 0.05 NK_HLA L2
ENSG00000134684 YARS -382451 sc-eQTL 3.51e-01 -0.192 0.205 0.05 NK_HLA L2
ENSG00000134686 PHC2 -995350 sc-eQTL 5.34e-01 0.106 0.17 0.05 NK_HLA L2
ENSG00000160050 CCDC28B 235316 sc-eQTL 4.08e-01 0.143 0.172 0.05 NK_HLA L2
ENSG00000160055 TMEM234 213343 sc-eQTL 4.77e-01 -0.14 0.196 0.05 NK_HLA L2
ENSG00000160058 BSDC1 40971 sc-eQTL 1.83e-02 0.47 0.198 0.05 NK_HLA L2
ENSG00000160094 ZNF362 -820790 sc-eQTL 2.03e-01 -0.248 0.194 0.05 NK_HLA L2
ENSG00000162517 PEF1 790806 sc-eQTL 3.60e-01 0.176 0.192 0.05 NK_HLA L2
ENSG00000162520 SYNC -267894 sc-eQTL 4.13e-01 -0.162 0.197 0.05 NK_HLA L2
ENSG00000162521 RBBP4 -215440 sc-eQTL 1.88e-02 -0.453 0.191 0.05 NK_HLA L2
ENSG00000175130 MARCKSL1 99469 sc-eQTL 7.79e-01 -0.042 0.149 0.05 NK_HLA L2
ENSG00000176261 ZBTB8OS -215201 sc-eQTL 7.47e-01 -0.0652 0.202 0.05 NK_HLA L2
ENSG00000182866 LCK 184463 sc-eQTL 4.76e-02 0.27 0.136 0.05 NK_HLA L2
ENSG00000184007 PTP4A2 490846 sc-eQTL 8.35e-01 0.0321 0.154 0.05 NK_HLA L2
ENSG00000004455 AK2 -645294 sc-eQTL 1.79e-02 0.436 0.183 0.051 cDC L2
ENSG00000025800 KPNA6 327646 sc-eQTL 6.89e-01 0.08 0.2 0.051 cDC L2
ENSG00000084623 EIF3I 213774 sc-eQTL 3.64e-01 -0.146 0.16 0.051 cDC L2
ENSG00000084652 TXLNA 256027 sc-eQTL 4.45e-01 0.159 0.208 0.051 cDC L2
ENSG00000116478 HDAC1 143619 sc-eQTL 7.79e-01 0.0514 0.183 0.051 cDC L2
ENSG00000116497 S100PBP -381065 sc-eQTL 2.21e-01 0.24 0.195 0.051 cDC L2
ENSG00000116514 RNF19B -528983 sc-eQTL 3.58e-01 0.156 0.169 0.051 cDC L2
ENSG00000116525 TRIM62 -746357 sc-eQTL 5.87e-01 0.105 0.192 0.051 cDC L2
ENSG00000121774 KHDRBS1 421834 sc-eQTL 8.69e-01 0.0249 0.151 0.051 cDC L2
ENSG00000121775 TMEM39B 363671 sc-eQTL 5.86e-01 -0.0977 0.179 0.051 cDC L2
ENSG00000134684 YARS -382451 sc-eQTL 7.72e-01 -0.0576 0.198 0.051 cDC L2
ENSG00000134686 PHC2 -995350 sc-eQTL 1.54e-01 -0.188 0.132 0.051 cDC L2
ENSG00000142920 AZIN2 -645402 sc-eQTL 3.79e-01 0.0917 0.104 0.051 cDC L2
ENSG00000160050 CCDC28B 235316 sc-eQTL 5.04e-01 0.133 0.198 0.051 cDC L2
ENSG00000160055 TMEM234 213343 sc-eQTL 4.44e-01 -0.141 0.183 0.051 cDC L2
ENSG00000160058 BSDC1 40971 sc-eQTL 7.11e-01 -0.0743 0.2 0.051 cDC L2
ENSG00000160062 ZBTB8A -103725 sc-eQTL 8.01e-02 -0.264 0.15 0.051 cDC L2
ENSG00000160094 ZNF362 -820790 sc-eQTL 3.56e-01 -0.168 0.181 0.051 cDC L2
ENSG00000162517 PEF1 790806 sc-eQTL 4.54e-03 0.508 0.177 0.051 cDC L2
ENSG00000162520 SYNC -267894 sc-eQTL 9.72e-01 -0.00658 0.19 0.051 cDC L2
ENSG00000162521 RBBP4 -215440 sc-eQTL 2.28e-01 -0.197 0.163 0.051 cDC L2
ENSG00000162522 KIAA1522 -306128 sc-eQTL 4.58e-03 -0.515 0.179 0.051 cDC L2
ENSG00000175130 MARCKSL1 99469 sc-eQTL 7.80e-02 -0.222 0.125 0.051 cDC L2
ENSG00000176261 ZBTB8OS -215201 sc-eQTL 9.52e-01 -0.0107 0.176 0.051 cDC L2
ENSG00000182866 LCK 184463 sc-eQTL 9.97e-01 0.000589 0.141 0.051 cDC L2
ENSG00000184007 PTP4A2 490846 sc-eQTL 7.39e-02 -0.27 0.15 0.051 cDC L2
ENSG00000225828 FAM229A 71424 sc-eQTL 8.52e-01 -0.0348 0.186 0.051 cDC L2
ENSG00000284543 LINC01226 929476 sc-eQTL 8.10e-01 0.0379 0.158 0.051 cDC L2
ENSG00000004455 AK2 -645294 sc-eQTL 4.96e-02 0.376 0.19 0.056 pDC L2
ENSG00000025800 KPNA6 327646 sc-eQTL 3.40e-01 -0.17 0.177 0.056 pDC L2
ENSG00000084623 EIF3I 213774 sc-eQTL 5.43e-01 -0.104 0.171 0.056 pDC L2
ENSG00000084652 TXLNA 256027 sc-eQTL 1.66e-01 -0.242 0.174 0.056 pDC L2
ENSG00000116478 HDAC1 143619 sc-eQTL 5.58e-01 -0.106 0.18 0.056 pDC L2
ENSG00000116497 S100PBP -381065 sc-eQTL 5.78e-01 -0.0883 0.158 0.056 pDC L2
ENSG00000116514 RNF19B -528983 sc-eQTL 4.51e-01 -0.146 0.193 0.056 pDC L2
ENSG00000116525 TRIM62 -746357 sc-eQTL 9.82e-01 -0.00443 0.192 0.056 pDC L2
ENSG00000121774 KHDRBS1 421834 sc-eQTL 5.11e-01 -0.103 0.157 0.056 pDC L2
ENSG00000121775 TMEM39B 363671 sc-eQTL 2.71e-01 -0.184 0.167 0.056 pDC L2
ENSG00000134684 YARS -382451 sc-eQTL 1.82e-01 0.259 0.193 0.056 pDC L2
ENSG00000134686 PHC2 -995350 sc-eQTL 8.64e-01 0.0267 0.156 0.056 pDC L2
ENSG00000142920 AZIN2 -645402 sc-eQTL 9.55e-01 0.00764 0.135 0.056 pDC L2
ENSG00000160050 CCDC28B 235316 sc-eQTL 7.59e-03 0.444 0.164 0.056 pDC L2
ENSG00000160055 TMEM234 213343 sc-eQTL 7.90e-01 0.0515 0.193 0.056 pDC L2
ENSG00000160058 BSDC1 40971 sc-eQTL 9.31e-01 -0.0161 0.185 0.056 pDC L2
ENSG00000160062 ZBTB8A -103725 sc-eQTL 1.93e-01 0.214 0.164 0.056 pDC L2
ENSG00000160094 ZNF362 -820790 sc-eQTL 4.91e-01 0.116 0.168 0.056 pDC L2
ENSG00000162517 PEF1 790806 sc-eQTL 3.74e-01 0.178 0.2 0.056 pDC L2
ENSG00000162520 SYNC -267894 sc-eQTL 4.91e-01 -0.12 0.174 0.056 pDC L2
ENSG00000162521 RBBP4 -215440 sc-eQTL 6.80e-01 -0.0523 0.126 0.056 pDC L2
ENSG00000162522 KIAA1522 -306128 sc-eQTL 6.79e-01 -0.0732 0.176 0.056 pDC L2
ENSG00000175130 MARCKSL1 99469 sc-eQTL 7.62e-01 0.0349 0.115 0.056 pDC L2
ENSG00000176261 ZBTB8OS -215201 sc-eQTL 8.68e-01 -0.0307 0.185 0.056 pDC L2
ENSG00000182866 LCK 184463 sc-eQTL 7.20e-01 -0.0511 0.142 0.056 pDC L2
ENSG00000184007 PTP4A2 490846 sc-eQTL 3.82e-01 -0.132 0.15 0.056 pDC L2
ENSG00000225828 FAM229A 71424 sc-eQTL 2.84e-01 -0.196 0.183 0.056 pDC L2
ENSG00000284543 LINC01226 929476 sc-eQTL 8.60e-01 0.0257 0.146 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116497 S100PBP -381065 eQTL 0.00293 -0.0867 0.0291 0.0 0.0 0.0471
ENSG00000142920 AZIN2 -645402 eQTL 0.0202 0.108 0.0465 0.0 0.0 0.0471
ENSG00000162521 RBBP4 -215440 eQTL 0.0159 0.0721 0.0299 0.0 0.0 0.0471
ENSG00000183615 FAM167B 188480 eQTL 1.5e-06 0.378 0.0782 0.0 0.0 0.0471
ENSG00000220785 MTMR9LP 194082 eQTL 4.24e-12 0.605 0.0862 0.0 0.0 0.0471

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134684 \N -382451 1.43e-06 1.5e-06 3e-07 1.28e-06 4.72e-07 6.24e-07 1.26e-06 4.13e-07 1.69e-06 7.15e-07 2.06e-06 8.75e-07 2.61e-06 4.19e-07 3.35e-07 9.61e-07 1.04e-06 1.09e-06 5.52e-07 6.87e-07 6.64e-07 1.96e-06 1.34e-06 6.51e-07 2.41e-06 9.3e-07 1.04e-06 1.07e-06 1.7e-06 1.34e-06 8.13e-07 2.31e-07 3.44e-07 5.84e-07 6.29e-07 5.3e-07 7.12e-07 3.5e-07 4.69e-07 2.29e-07 3.31e-07 2.12e-06 3.74e-07 1.99e-07 3.87e-07 3.22e-07 3.2e-07 1.43e-07 2.89e-07
ENSG00000142920 AZIN2 -645402 9.47e-07 6.81e-07 2.41e-07 4.06e-07 1.07e-07 2.95e-07 6.52e-07 1.78e-07 6.53e-07 3.04e-07 9.92e-07 4.03e-07 9.65e-07 1.57e-07 3.94e-07 3.57e-07 5.27e-07 4.25e-07 3.74e-07 3.11e-07 2.41e-07 5.11e-07 4.06e-07 2.71e-07 1.28e-06 2.52e-07 4.97e-07 3.88e-07 5.9e-07 7.09e-07 3.66e-07 3.99e-08 4.98e-08 1.73e-07 3.8e-07 1.55e-07 1.86e-07 1.23e-07 8.35e-08 1.86e-08 1.8e-07 7.2e-07 6.11e-08 2.65e-08 1.74e-07 4.33e-08 1.28e-07 2.48e-08 5.26e-08
ENSG00000162521 RBBP4 -215440 4.33e-06 4.89e-06 8.35e-07 2.73e-06 1.53e-06 1.33e-06 4.17e-06 1.01e-06 4.57e-06 2.35e-06 4.71e-06 3.11e-06 6.82e-06 2.15e-06 1.43e-06 3.34e-06 2.06e-06 2.88e-06 1.47e-06 1.12e-06 2.9e-06 4.6e-06 3.67e-06 1.4e-06 5.75e-06 1.74e-06 2.42e-06 1.78e-06 4.48e-06 3.62e-06 1.94e-06 5.58e-07 6.31e-07 1.87e-06 2e-06 9.06e-07 9.16e-07 3.74e-07 1.06e-06 3.71e-07 5.21e-07 5.31e-06 4.02e-07 1.6e-07 6.98e-07 1.02e-06 9.78e-07 4.41e-07 4.39e-07
ENSG00000183615 FAM167B 188480 4.63e-06 5.12e-06 6.06e-07 3.48e-06 1.66e-06 1.64e-06 5.71e-06 1.09e-06 5.13e-06 2.8e-06 5.68e-06 3.54e-06 7.12e-06 1.94e-06 1.04e-06 3.74e-06 1.84e-06 3.79e-06 1.45e-06 1.4e-06 2.77e-06 4.91e-06 4.49e-06 1.65e-06 7.95e-06 2.05e-06 2.64e-06 1.71e-06 4.73e-06 4.17e-06 2.75e-06 4.34e-07 6.5e-07 1.59e-06 2.03e-06 1.16e-06 1.09e-06 4.56e-07 8.5e-07 5.91e-07 7.14e-07 5.79e-06 5.44e-07 1.66e-07 7.99e-07 1.07e-06 1.13e-06 6.92e-07 5.12e-07
ENSG00000220785 MTMR9LP 194082 4.48e-06 5.13e-06 7.29e-07 3.08e-06 1.63e-06 1.74e-06 5.37e-06 1.07e-06 5.09e-06 2.5e-06 5.56e-06 3.29e-06 7.07e-06 2.15e-06 1.13e-06 3.69e-06 1.91e-06 3.53e-06 1.45e-06 1.34e-06 2.75e-06 4.9e-06 4.59e-06 1.48e-06 7.45e-06 2.01e-06 2.28e-06 1.55e-06 4.43e-06 4.23e-06 2.75e-06 4.18e-07 5.21e-07 1.46e-06 2.07e-06 1.11e-06 1.09e-06 4.57e-07 9.42e-07 5.97e-07 6.7e-07 5.69e-06 4.73e-07 1.58e-07 7.75e-07 1.12e-06 1.13e-06 5.51e-07 4.98e-07