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Genes within 1Mb (chr1:32435423:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000004455 AK2 -645573 sc-eQTL 3.08e-01 0.187 0.183 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 327367 sc-eQTL 9.05e-01 -0.0242 0.202 0.05 CD4_CTL L2
ENSG00000084623 EIF3I 213495 sc-eQTL 8.10e-02 -0.298 0.17 0.05 CD4_CTL L2
ENSG00000084652 TXLNA 255748 sc-eQTL 9.52e-01 0.011 0.182 0.05 CD4_CTL L2
ENSG00000116478 HDAC1 143340 sc-eQTL 9.91e-01 -0.00207 0.178 0.05 CD4_CTL L2
ENSG00000116497 S100PBP -381344 sc-eQTL 8.41e-02 -0.317 0.182 0.05 CD4_CTL L2
ENSG00000116514 RNF19B -529262 sc-eQTL 7.42e-01 -0.0586 0.178 0.05 CD4_CTL L2
ENSG00000116525 TRIM62 -746636 sc-eQTL 3.58e-02 -0.376 0.178 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 421555 sc-eQTL 4.30e-02 0.314 0.154 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B 363392 sc-eQTL 2.94e-01 0.202 0.192 0.05 CD4_CTL L2
ENSG00000134684 YARS -382730 sc-eQTL 9.58e-02 0.298 0.178 0.05 CD4_CTL L2
ENSG00000134686 PHC2 -995629 sc-eQTL 2.53e-01 -0.194 0.17 0.05 CD4_CTL L2
ENSG00000142920 AZIN2 -645681 sc-eQTL 8.82e-01 -0.026 0.175 0.05 CD4_CTL L2
ENSG00000160050 CCDC28B 235037 sc-eQTL 7.90e-01 0.0484 0.182 0.05 CD4_CTL L2
ENSG00000160055 TMEM234 213064 sc-eQTL 8.83e-01 0.0288 0.196 0.05 CD4_CTL L2
ENSG00000160058 BSDC1 40692 sc-eQTL 5.00e-01 -0.127 0.188 0.05 CD4_CTL L2
ENSG00000160094 ZNF362 -821069 sc-eQTL 1.04e-01 -0.293 0.179 0.05 CD4_CTL L2
ENSG00000162517 PEF1 790527 sc-eQTL 2.38e-02 0.376 0.165 0.05 CD4_CTL L2
ENSG00000162520 SYNC -268173 sc-eQTL 5.70e-01 0.11 0.194 0.05 CD4_CTL L2
ENSG00000162521 RBBP4 -215719 sc-eQTL 7.37e-02 -0.311 0.173 0.05 CD4_CTL L2
ENSG00000175130 MARCKSL1 99190 sc-eQTL 3.35e-01 0.177 0.183 0.05 CD4_CTL L2
ENSG00000176261 ZBTB8OS -215480 sc-eQTL 7.13e-01 0.0687 0.187 0.05 CD4_CTL L2
ENSG00000182866 LCK 184184 sc-eQTL 4.70e-01 -0.0932 0.129 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 490567 sc-eQTL 8.38e-01 -0.0212 0.104 0.05 CD4_CTL L2
ENSG00000225828 FAM229A 71145 sc-eQTL 9.53e-01 -0.0101 0.171 0.05 CD4_CTL L2
ENSG00000004455 AK2 -645573 sc-eQTL 7.38e-01 0.0645 0.193 0.05 NK_HLA L2
ENSG00000025800 KPNA6 327367 sc-eQTL 3.30e-01 -0.194 0.199 0.05 NK_HLA L2
ENSG00000084623 EIF3I 213495 sc-eQTL 9.12e-01 -0.0223 0.202 0.05 NK_HLA L2
ENSG00000084652 TXLNA 255748 sc-eQTL 8.62e-01 -0.0324 0.187 0.05 NK_HLA L2
ENSG00000116478 HDAC1 143340 sc-eQTL 8.91e-01 0.0247 0.18 0.05 NK_HLA L2
ENSG00000116497 S100PBP -381344 sc-eQTL 9.79e-01 -0.00496 0.185 0.05 NK_HLA L2
ENSG00000116514 RNF19B -529262 sc-eQTL 8.04e-02 -0.323 0.184 0.05 NK_HLA L2
ENSG00000116525 TRIM62 -746636 sc-eQTL 6.26e-01 0.0953 0.195 0.05 NK_HLA L2
ENSG00000121753 ADGRB2 670530 sc-eQTL 9.33e-01 -0.0137 0.163 0.05 NK_HLA L2
ENSG00000121774 KHDRBS1 421555 sc-eQTL 7.62e-01 0.0512 0.169 0.05 NK_HLA L2
ENSG00000121775 TMEM39B 363392 sc-eQTL 9.88e-01 -0.00299 0.203 0.05 NK_HLA L2
ENSG00000134684 YARS -382730 sc-eQTL 3.51e-01 -0.192 0.205 0.05 NK_HLA L2
ENSG00000134686 PHC2 -995629 sc-eQTL 5.34e-01 0.106 0.17 0.05 NK_HLA L2
ENSG00000160050 CCDC28B 235037 sc-eQTL 4.08e-01 0.143 0.172 0.05 NK_HLA L2
ENSG00000160055 TMEM234 213064 sc-eQTL 4.77e-01 -0.14 0.196 0.05 NK_HLA L2
ENSG00000160058 BSDC1 40692 sc-eQTL 1.83e-02 0.47 0.198 0.05 NK_HLA L2
ENSG00000160094 ZNF362 -821069 sc-eQTL 2.03e-01 -0.248 0.194 0.05 NK_HLA L2
ENSG00000162517 PEF1 790527 sc-eQTL 3.60e-01 0.176 0.192 0.05 NK_HLA L2
ENSG00000162520 SYNC -268173 sc-eQTL 4.13e-01 -0.162 0.197 0.05 NK_HLA L2
ENSG00000162521 RBBP4 -215719 sc-eQTL 1.88e-02 -0.453 0.191 0.05 NK_HLA L2
ENSG00000175130 MARCKSL1 99190 sc-eQTL 7.79e-01 -0.042 0.149 0.05 NK_HLA L2
ENSG00000176261 ZBTB8OS -215480 sc-eQTL 7.47e-01 -0.0652 0.202 0.05 NK_HLA L2
ENSG00000182866 LCK 184184 sc-eQTL 4.76e-02 0.27 0.136 0.05 NK_HLA L2
ENSG00000184007 PTP4A2 490567 sc-eQTL 8.35e-01 0.0321 0.154 0.05 NK_HLA L2
ENSG00000004455 AK2 -645573 sc-eQTL 1.79e-02 0.436 0.183 0.051 cDC L2
ENSG00000025800 KPNA6 327367 sc-eQTL 6.89e-01 0.08 0.2 0.051 cDC L2
ENSG00000084623 EIF3I 213495 sc-eQTL 3.64e-01 -0.146 0.16 0.051 cDC L2
ENSG00000084652 TXLNA 255748 sc-eQTL 4.45e-01 0.159 0.208 0.051 cDC L2
ENSG00000116478 HDAC1 143340 sc-eQTL 7.79e-01 0.0514 0.183 0.051 cDC L2
ENSG00000116497 S100PBP -381344 sc-eQTL 2.21e-01 0.24 0.195 0.051 cDC L2
ENSG00000116514 RNF19B -529262 sc-eQTL 3.58e-01 0.156 0.169 0.051 cDC L2
ENSG00000116525 TRIM62 -746636 sc-eQTL 5.87e-01 0.105 0.192 0.051 cDC L2
ENSG00000121774 KHDRBS1 421555 sc-eQTL 8.69e-01 0.0249 0.151 0.051 cDC L2
ENSG00000121775 TMEM39B 363392 sc-eQTL 5.86e-01 -0.0977 0.179 0.051 cDC L2
ENSG00000134684 YARS -382730 sc-eQTL 7.72e-01 -0.0576 0.198 0.051 cDC L2
ENSG00000134686 PHC2 -995629 sc-eQTL 1.54e-01 -0.188 0.132 0.051 cDC L2
ENSG00000142920 AZIN2 -645681 sc-eQTL 3.79e-01 0.0917 0.104 0.051 cDC L2
ENSG00000160050 CCDC28B 235037 sc-eQTL 5.04e-01 0.133 0.198 0.051 cDC L2
ENSG00000160055 TMEM234 213064 sc-eQTL 4.44e-01 -0.141 0.183 0.051 cDC L2
ENSG00000160058 BSDC1 40692 sc-eQTL 7.11e-01 -0.0743 0.2 0.051 cDC L2
ENSG00000160062 ZBTB8A -104004 sc-eQTL 8.01e-02 -0.264 0.15 0.051 cDC L2
ENSG00000160094 ZNF362 -821069 sc-eQTL 3.56e-01 -0.168 0.181 0.051 cDC L2
ENSG00000162517 PEF1 790527 sc-eQTL 4.54e-03 0.508 0.177 0.051 cDC L2
ENSG00000162520 SYNC -268173 sc-eQTL 9.72e-01 -0.00658 0.19 0.051 cDC L2
ENSG00000162521 RBBP4 -215719 sc-eQTL 2.28e-01 -0.197 0.163 0.051 cDC L2
ENSG00000162522 KIAA1522 -306407 sc-eQTL 4.58e-03 -0.515 0.179 0.051 cDC L2
ENSG00000175130 MARCKSL1 99190 sc-eQTL 7.80e-02 -0.222 0.125 0.051 cDC L2
ENSG00000176261 ZBTB8OS -215480 sc-eQTL 9.52e-01 -0.0107 0.176 0.051 cDC L2
ENSG00000182866 LCK 184184 sc-eQTL 9.97e-01 0.000589 0.141 0.051 cDC L2
ENSG00000184007 PTP4A2 490567 sc-eQTL 7.39e-02 -0.27 0.15 0.051 cDC L2
ENSG00000225828 FAM229A 71145 sc-eQTL 8.52e-01 -0.0348 0.186 0.051 cDC L2
ENSG00000284543 LINC01226 929197 sc-eQTL 8.10e-01 0.0379 0.158 0.051 cDC L2
ENSG00000004455 AK2 -645573 sc-eQTL 4.96e-02 0.376 0.19 0.056 pDC L2
ENSG00000025800 KPNA6 327367 sc-eQTL 3.40e-01 -0.17 0.177 0.056 pDC L2
ENSG00000084623 EIF3I 213495 sc-eQTL 5.43e-01 -0.104 0.171 0.056 pDC L2
ENSG00000084652 TXLNA 255748 sc-eQTL 1.66e-01 -0.242 0.174 0.056 pDC L2
ENSG00000116478 HDAC1 143340 sc-eQTL 5.58e-01 -0.106 0.18 0.056 pDC L2
ENSG00000116497 S100PBP -381344 sc-eQTL 5.78e-01 -0.0883 0.158 0.056 pDC L2
ENSG00000116514 RNF19B -529262 sc-eQTL 4.51e-01 -0.146 0.193 0.056 pDC L2
ENSG00000116525 TRIM62 -746636 sc-eQTL 9.82e-01 -0.00443 0.192 0.056 pDC L2
ENSG00000121774 KHDRBS1 421555 sc-eQTL 5.11e-01 -0.103 0.157 0.056 pDC L2
ENSG00000121775 TMEM39B 363392 sc-eQTL 2.71e-01 -0.184 0.167 0.056 pDC L2
ENSG00000134684 YARS -382730 sc-eQTL 1.82e-01 0.259 0.193 0.056 pDC L2
ENSG00000134686 PHC2 -995629 sc-eQTL 8.64e-01 0.0267 0.156 0.056 pDC L2
ENSG00000142920 AZIN2 -645681 sc-eQTL 9.55e-01 0.00764 0.135 0.056 pDC L2
ENSG00000160050 CCDC28B 235037 sc-eQTL 7.59e-03 0.444 0.164 0.056 pDC L2
ENSG00000160055 TMEM234 213064 sc-eQTL 7.90e-01 0.0515 0.193 0.056 pDC L2
ENSG00000160058 BSDC1 40692 sc-eQTL 9.31e-01 -0.0161 0.185 0.056 pDC L2
ENSG00000160062 ZBTB8A -104004 sc-eQTL 1.93e-01 0.214 0.164 0.056 pDC L2
ENSG00000160094 ZNF362 -821069 sc-eQTL 4.91e-01 0.116 0.168 0.056 pDC L2
ENSG00000162517 PEF1 790527 sc-eQTL 3.74e-01 0.178 0.2 0.056 pDC L2
ENSG00000162520 SYNC -268173 sc-eQTL 4.91e-01 -0.12 0.174 0.056 pDC L2
ENSG00000162521 RBBP4 -215719 sc-eQTL 6.80e-01 -0.0523 0.126 0.056 pDC L2
ENSG00000162522 KIAA1522 -306407 sc-eQTL 6.79e-01 -0.0732 0.176 0.056 pDC L2
ENSG00000175130 MARCKSL1 99190 sc-eQTL 7.62e-01 0.0349 0.115 0.056 pDC L2
ENSG00000176261 ZBTB8OS -215480 sc-eQTL 8.68e-01 -0.0307 0.185 0.056 pDC L2
ENSG00000182866 LCK 184184 sc-eQTL 7.20e-01 -0.0511 0.142 0.056 pDC L2
ENSG00000184007 PTP4A2 490567 sc-eQTL 3.82e-01 -0.132 0.15 0.056 pDC L2
ENSG00000225828 FAM229A 71145 sc-eQTL 2.84e-01 -0.196 0.183 0.056 pDC L2
ENSG00000284543 LINC01226 929197 sc-eQTL 8.60e-01 0.0257 0.146 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116497 S100PBP -381344 eQTL 0.00294 -0.0866 0.0291 0.0 0.0 0.0471
ENSG00000142920 AZIN2 -645681 eQTL 0.0206 0.108 0.0465 0.0 0.0 0.0471
ENSG00000162521 RBBP4 -215719 eQTL 0.0159 0.0721 0.0299 0.0 0.0 0.0471
ENSG00000183615 FAM167B 188201 eQTL 1.47e-06 0.379 0.0781 0.0 0.0 0.0471
ENSG00000220785 MTMR9LP 193803 eQTL 4.14e-12 0.605 0.0861 0.0 0.0 0.0471

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134684 \N -382730 1.27e-06 8.81e-07 2.41e-07 3.04e-07 1.96e-07 3.24e-07 8.7e-07 3.34e-07 1.14e-06 3.13e-07 1.24e-06 6.07e-07 1.46e-06 2.09e-07 4.6e-07 6.22e-07 7.47e-07 5.67e-07 3.48e-07 3.99e-07 2.8e-07 7.73e-07 6.11e-07 4.22e-07 1.69e-06 3.02e-07 5.83e-07 5.29e-07 8.4e-07 8.89e-07 4.71e-07 3.51e-08 1.31e-07 3.51e-07 3.27e-07 3.1e-07 2.83e-07 1.24e-07 1.54e-07 3.03e-08 2.97e-07 1.12e-06 5.78e-08 1.62e-08 1.93e-07 4.43e-08 1.67e-07 3.17e-08 5.39e-08
ENSG00000142920 AZIN2 -645681 4.37e-07 2.17e-07 6.41e-08 2.45e-07 1.07e-07 9.31e-08 3.33e-07 7.46e-08 2.56e-07 1.37e-07 2.84e-07 1.91e-07 3.95e-07 8.42e-08 9.12e-08 1.33e-07 7.3e-08 2.83e-07 7.11e-08 7.83e-08 1.33e-07 2.24e-07 2.04e-07 3.83e-08 3.55e-07 2e-07 1.48e-07 1.61e-07 1.6e-07 1.69e-07 1.76e-07 4.93e-08 4.74e-08 9.09e-08 8.75e-08 4.77e-08 6.24e-08 7.63e-08 5.8e-08 8.06e-08 3.64e-08 2.5e-07 3.35e-08 7.35e-09 3.61e-08 9.44e-09 7.52e-08 2.05e-09 4.83e-08
ENSG00000162521 RBBP4 -215719 1.87e-06 2.09e-06 2.74e-07 1.42e-06 4.49e-07 6.43e-07 1.33e-06 6.01e-07 1.7e-06 7.46e-07 2.02e-06 1.45e-06 3.28e-06 8.7e-07 5.46e-07 1.24e-06 1.1e-06 1.59e-06 5.54e-07 9.52e-07 7.78e-07 2.15e-06 1.78e-06 9.4e-07 2.61e-06 1.2e-06 1.18e-06 1.4e-06 1.85e-06 1.58e-06 1.08e-06 2.62e-07 4.76e-07 1.09e-06 9.25e-07 8.31e-07 7.59e-07 3.37e-07 8.03e-07 3.5e-07 1.96e-07 2.79e-06 3.49e-07 1.41e-07 3.75e-07 3.29e-07 4.27e-07 2.24e-07 2.14e-07
ENSG00000183615 FAM167B 188201 2.65e-06 2.55e-06 3.38e-07 1.8e-06 6.3e-07 8.24e-07 1.88e-06 8.67e-07 1.97e-06 9.63e-07 2.51e-06 1.35e-06 3.54e-06 1.38e-06 8.86e-07 1.72e-06 1.09e-06 2.25e-06 9.83e-07 1.35e-06 1.21e-06 3.02e-06 2.42e-06 1.17e-06 3.57e-06 1.09e-06 1.36e-06 1.77e-06 2.55e-06 1.79e-06 1.81e-06 3.26e-07 5.87e-07 1.28e-06 1.13e-06 1.03e-06 8.38e-07 4.21e-07 1.17e-06 4.35e-07 2.78e-07 3.42e-06 3.92e-07 2.07e-07 3.04e-07 3.33e-07 7.75e-07 2.23e-07 1.54e-07
ENSG00000220785 MTMR9LP 193803 2.69e-06 2.62e-06 3.33e-07 1.7e-06 6.17e-07 8.03e-07 1.85e-06 6.98e-07 1.92e-06 8.92e-07 2.38e-06 1.29e-06 3.31e-06 1.24e-06 9.23e-07 1.74e-06 9.77e-07 2.3e-06 7.93e-07 1.32e-06 1.16e-06 2.91e-06 2.33e-06 1.01e-06 3.48e-06 1.21e-06 1.28e-06 1.79e-06 2.17e-06 1.84e-06 1.72e-06 3.22e-07 5.05e-07 1.25e-06 1.02e-06 9.49e-07 7.5e-07 4.41e-07 1.18e-06 3.8e-07 2.8e-07 3.33e-06 4.11e-07 2.07e-07 3.01e-07 3.26e-07 6.76e-07 2.19e-07 2.06e-07