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Genes within 1Mb (chr1:31981613:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -126443 sc-eQTL 1.41e-01 -0.303 0.205 0.054 pDC L2
ENSG00000060688 SNRNP40 684825 sc-eQTL 5.92e-01 0.114 0.212 0.054 pDC L2
ENSG00000084623 EIF3I -240315 sc-eQTL 5.96e-01 -0.105 0.198 0.054 pDC L2
ENSG00000084652 TXLNA -198062 sc-eQTL 1.45e-01 0.296 0.202 0.054 pDC L2
ENSG00000116478 HDAC1 -310470 sc-eQTL 3.60e-01 0.192 0.209 0.054 pDC L2
ENSG00000116497 S100PBP -835154 sc-eQTL 7.00e-01 -0.071 0.184 0.054 pDC L2
ENSG00000116514 RNF19B -983072 sc-eQTL 8.71e-02 0.383 0.222 0.054 pDC L2
ENSG00000121766 ZCCHC17 684631 sc-eQTL 8.17e-01 -0.0541 0.233 0.054 pDC L2
ENSG00000121774 KHDRBS1 -32255 sc-eQTL 2.67e-01 0.202 0.182 0.054 pDC L2
ENSG00000121775 TMEM39B -90418 sc-eQTL 5.50e-01 0.116 0.194 0.054 pDC L2
ENSG00000134644 PUM1 915622 sc-eQTL 7.69e-01 -0.0567 0.193 0.054 pDC L2
ENSG00000134684 YARS -836540 sc-eQTL 9.80e-01 -0.0056 0.225 0.054 pDC L2
ENSG00000160050 CCDC28B -218773 sc-eQTL 5.54e-01 -0.115 0.195 0.054 pDC L2
ENSG00000160055 TMEM234 -240746 sc-eQTL 8.73e-01 -0.0359 0.224 0.054 pDC L2
ENSG00000160058 BSDC1 -413118 sc-eQTL 3.63e-01 -0.196 0.215 0.054 pDC L2
ENSG00000160062 ZBTB8A -557814 sc-eQTL 2.04e-01 -0.243 0.19 0.054 pDC L2
ENSG00000162517 PEF1 336717 sc-eQTL 3.47e-01 -0.219 0.232 0.054 pDC L2
ENSG00000162520 SYNC -721983 sc-eQTL 7.35e-01 0.0684 0.202 0.054 pDC L2
ENSG00000162521 RBBP4 -669529 sc-eQTL 2.76e-01 0.16 0.146 0.054 pDC L2
ENSG00000162522 KIAA1522 -760217 sc-eQTL 7.68e-01 0.0604 0.205 0.054 pDC L2
ENSG00000168528 SERINC2 572048 sc-eQTL 4.01e-01 0.183 0.217 0.054 pDC L2
ENSG00000175130 MARCKSL1 -354620 sc-eQTL 5.58e-01 0.0782 0.133 0.054 pDC L2
ENSG00000176261 ZBTB8OS -669290 sc-eQTL 7.33e-01 -0.0732 0.214 0.054 pDC L2
ENSG00000182866 LCK -269626 sc-eQTL 8.11e-01 -0.0395 0.165 0.054 pDC L2
ENSG00000184007 PTP4A2 36757 sc-eQTL 9.22e-01 0.017 0.175 0.054 pDC L2
ENSG00000225828 FAM229A -382665 sc-eQTL 5.14e-01 -0.139 0.212 0.054 pDC L2
ENSG00000284543 LINC01226 475387 sc-eQTL 6.53e-01 -0.0761 0.169 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084652 TXLNA -198062 eQTL 0.0421 -0.0987 0.0485 0.0 0.0 0.0348
ENSG00000160050 CCDC28B -218773 eQTL 0.0123 -0.144 0.0572 0.0 0.0 0.0348

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116478 \N -310470 3.53e-06 1.25e-06 2.1e-07 1.19e-06 1.11e-07 7.92e-07 1.32e-06 9.91e-08 8.08e-07 2.98e-07 1.09e-06 3.27e-07 1.62e-06 2.7e-07 4.36e-07 5.75e-07 6.44e-07 5.63e-07 3.3e-07 3.54e-07 2.39e-07 6.2e-07 7.78e-07 3.01e-07 1.97e-06 2.7e-07 5.83e-07 3.13e-07 8.4e-07 9.21e-07 3.68e-07 7.4e-08 5.37e-08 3.78e-07 5.61e-07 2.74e-08 1.03e-07 7.25e-08 6.41e-08 2.11e-07 3.5e-08 1.62e-06 2.46e-07 5.67e-08 1.82e-07 4.43e-08 1.28e-07 0.0 4.66e-08
ENSG00000160050 CCDC28B -218773 5.75e-06 2.44e-06 2.74e-07 1.71e-06 2.98e-07 1.07e-06 1.21e-06 2.62e-07 1.41e-06 6.18e-07 1.89e-06 5.7e-07 2.61e-06 5.86e-07 4.85e-07 9.52e-07 9.26e-07 1.1e-06 7.02e-07 6.52e-07 6.66e-07 1.72e-06 1.21e-06 6.4e-07 2.5e-06 6.68e-07 1.03e-06 7.19e-07 1.62e-06 1.2e-06 5.88e-07 4.4e-08 2.13e-07 6.16e-07 9.03e-07 7.92e-08 2.36e-07 8.15e-08 1.49e-07 3.47e-07 1.01e-07 3.17e-06 4.62e-07 6.53e-08 2.78e-07 1.24e-07 2.29e-07 1.15e-08 6.17e-08
ENSG00000183615 \N -265609 4.2e-06 2.12e-06 2.79e-07 1.25e-06 1.96e-07 7.84e-07 1.48e-06 1.59e-07 1.14e-06 3.78e-07 1.35e-06 4.62e-07 2.16e-06 2.95e-07 5.22e-07 8.48e-07 7.74e-07 6.85e-07 4.24e-07 6.11e-07 3.6e-07 1.08e-06 8.66e-07 4.87e-07 2.22e-06 3.87e-07 7.6e-07 4.7e-07 1.24e-06 1.18e-06 4.48e-07 6.84e-08 1.36e-07 6.53e-07 5.17e-07 4.86e-08 1.01e-07 6e-08 7.42e-08 2.29e-07 8.09e-08 2.13e-06 4.13e-07 5.72e-08 1.69e-07 7.5e-08 1.7e-07 2.75e-09 5.05e-08