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Genes within 1Mb (chr1:31820076:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -287980 sc-eQTL 1.98e-03 0.802 0.253 0.052 PB L2
ENSG00000060688 SNRNP40 523288 sc-eQTL 3.71e-01 0.215 0.24 0.052 PB L2
ENSG00000084623 EIF3I -401852 sc-eQTL 3.41e-01 0.148 0.155 0.052 PB L2
ENSG00000084652 TXLNA -359599 sc-eQTL 2.83e-03 0.606 0.198 0.052 PB L2
ENSG00000116478 HDAC1 -472007 sc-eQTL 7.95e-01 -0.0622 0.239 0.052 PB L2
ENSG00000116497 S100PBP -996691 sc-eQTL 6.22e-01 -0.126 0.255 0.052 PB L2
ENSG00000121766 ZCCHC17 523094 sc-eQTL 7.87e-05 1.07 0.26 0.052 PB L2
ENSG00000121774 KHDRBS1 -193792 sc-eQTL 3.12e-01 0.218 0.214 0.052 PB L2
ENSG00000121775 TMEM39B -251955 sc-eQTL 3.18e-01 0.247 0.247 0.052 PB L2
ENSG00000134644 PUM1 754085 sc-eQTL 5.43e-01 -0.148 0.242 0.052 PB L2
ENSG00000134684 YARS -998077 sc-eQTL 7.41e-01 -0.0625 0.188 0.052 PB L2
ENSG00000160050 CCDC28B -380310 sc-eQTL 9.66e-01 0.0101 0.236 0.052 PB L2
ENSG00000160055 TMEM234 -402283 sc-eQTL 1.77e-01 0.366 0.269 0.052 PB L2
ENSG00000160058 BSDC1 -574655 sc-eQTL 4.32e-01 0.233 0.296 0.052 PB L2
ENSG00000162517 PEF1 175180 sc-eQTL 6.00e-02 0.465 0.245 0.052 PB L2
ENSG00000162520 SYNC -883520 sc-eQTL 2.40e-01 0.252 0.214 0.052 PB L2
ENSG00000162521 RBBP4 -831066 sc-eQTL 6.56e-01 0.0845 0.189 0.052 PB L2
ENSG00000175130 MARCKSL1 -516157 sc-eQTL 3.52e-01 0.182 0.195 0.052 PB L2
ENSG00000176261 ZBTB8OS -830827 sc-eQTL 4.97e-01 0.107 0.157 0.052 PB L2
ENSG00000182866 LCK -431163 sc-eQTL 1.66e-01 -0.34 0.244 0.052 PB L2
ENSG00000184007 PTP4A2 -124780 sc-eQTL 4.26e-02 0.34 0.166 0.052 PB L2
ENSG00000025800 KPNA6 -287980 sc-eQTL 9.54e-01 0.0152 0.262 0.052 gdT L2
ENSG00000060688 SNRNP40 523288 sc-eQTL 5.05e-01 -0.176 0.264 0.052 gdT L2
ENSG00000084623 EIF3I -401852 sc-eQTL 7.75e-01 -0.0722 0.253 0.052 gdT L2
ENSG00000084652 TXLNA -359599 sc-eQTL 1.92e-01 0.297 0.227 0.052 gdT L2
ENSG00000116478 HDAC1 -472007 sc-eQTL 9.86e-01 -0.00394 0.221 0.052 gdT L2
ENSG00000116497 S100PBP -996691 sc-eQTL 5.20e-01 -0.141 0.219 0.052 gdT L2
ENSG00000121766 ZCCHC17 523094 sc-eQTL 2.56e-01 0.258 0.226 0.052 gdT L2
ENSG00000121774 KHDRBS1 -193792 sc-eQTL 1.83e-01 0.282 0.211 0.052 gdT L2
ENSG00000121775 TMEM39B -251955 sc-eQTL 2.20e-02 0.54 0.233 0.052 gdT L2
ENSG00000134644 PUM1 754085 sc-eQTL 2.31e-01 0.28 0.233 0.052 gdT L2
ENSG00000134684 YARS -998077 sc-eQTL 7.85e-01 0.0658 0.241 0.052 gdT L2
ENSG00000160050 CCDC28B -380310 sc-eQTL 2.45e-01 0.238 0.204 0.052 gdT L2
ENSG00000160055 TMEM234 -402283 sc-eQTL 8.74e-01 0.0379 0.238 0.052 gdT L2
ENSG00000160058 BSDC1 -574655 sc-eQTL 3.80e-01 -0.215 0.244 0.052 gdT L2
ENSG00000162517 PEF1 175180 sc-eQTL 7.63e-01 -0.0703 0.233 0.052 gdT L2
ENSG00000162520 SYNC -883520 sc-eQTL 8.49e-01 -0.0454 0.237 0.052 gdT L2
ENSG00000162521 RBBP4 -831066 sc-eQTL 4.14e-01 -0.186 0.228 0.052 gdT L2
ENSG00000175130 MARCKSL1 -516157 sc-eQTL 1.02e-01 -0.359 0.218 0.052 gdT L2
ENSG00000176261 ZBTB8OS -830827 sc-eQTL 7.60e-01 -0.0761 0.248 0.052 gdT L2
ENSG00000182866 LCK -431163 sc-eQTL 8.70e-01 -0.0238 0.145 0.052 gdT L2
ENSG00000184007 PTP4A2 -124780 sc-eQTL 1.01e-01 -0.323 0.196 0.052 gdT L2
ENSG00000025800 KPNA6 -287980 sc-eQTL 2.18e-01 0.253 0.204 0.051 pDC L2
ENSG00000060688 SNRNP40 523288 sc-eQTL 6.31e-01 -0.102 0.211 0.051 pDC L2
ENSG00000084623 EIF3I -401852 sc-eQTL 3.72e-01 -0.176 0.197 0.051 pDC L2
ENSG00000084652 TXLNA -359599 sc-eQTL 5.73e-01 -0.114 0.202 0.051 pDC L2
ENSG00000116478 HDAC1 -472007 sc-eQTL 7.21e-01 -0.0747 0.209 0.051 pDC L2
ENSG00000116497 S100PBP -996691 sc-eQTL 3.57e-01 -0.169 0.183 0.051 pDC L2
ENSG00000121766 ZCCHC17 523094 sc-eQTL 7.82e-01 -0.0642 0.232 0.051 pDC L2
ENSG00000121774 KHDRBS1 -193792 sc-eQTL 5.67e-01 0.104 0.181 0.051 pDC L2
ENSG00000121775 TMEM39B -251955 sc-eQTL 5.65e-01 -0.112 0.193 0.051 pDC L2
ENSG00000134644 PUM1 754085 sc-eQTL 6.54e-01 0.0863 0.192 0.051 pDC L2
ENSG00000134684 YARS -998077 sc-eQTL 8.56e-01 0.0407 0.224 0.051 pDC L2
ENSG00000160050 CCDC28B -380310 sc-eQTL 7.60e-01 -0.0593 0.194 0.051 pDC L2
ENSG00000160055 TMEM234 -402283 sc-eQTL 7.13e-01 -0.0822 0.223 0.051 pDC L2
ENSG00000160058 BSDC1 -574655 sc-eQTL 2.57e-01 -0.243 0.213 0.051 pDC L2
ENSG00000160062 ZBTB8A -719351 sc-eQTL 4.09e-01 -0.157 0.19 0.051 pDC L2
ENSG00000162517 PEF1 175180 sc-eQTL 5.35e-01 0.144 0.232 0.051 pDC L2
ENSG00000162520 SYNC -883520 sc-eQTL 8.74e-01 -0.0319 0.201 0.051 pDC L2
ENSG00000162521 RBBP4 -831066 sc-eQTL 8.34e-01 -0.0307 0.146 0.051 pDC L2
ENSG00000162522 KIAA1522 -921754 sc-eQTL 9.10e-01 0.0231 0.204 0.051 pDC L2
ENSG00000168528 SERINC2 410511 sc-eQTL 5.98e-01 -0.114 0.217 0.051 pDC L2
ENSG00000175130 MARCKSL1 -516157 sc-eQTL 7.97e-03 -0.349 0.13 0.051 pDC L2
ENSG00000176261 ZBTB8OS -830827 sc-eQTL 5.44e-01 -0.13 0.213 0.051 pDC L2
ENSG00000182866 LCK -431163 sc-eQTL 6.27e-01 -0.0801 0.164 0.051 pDC L2
ENSG00000184007 PTP4A2 -124780 sc-eQTL 1.85e-01 -0.23 0.173 0.051 pDC L2
ENSG00000225828 FAM229A -544202 sc-eQTL 1.21e-01 0.328 0.21 0.051 pDC L2
ENSG00000284543 LINC01226 313850 sc-eQTL 5.64e-01 -0.0972 0.168 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162520 SYNC -883520 eQTL 0.0629 -0.125 0.067 0.0023 0.0 0.0574
ENSG00000184007 PTP4A2 -124780 eQTL 0.0193 -0.0598 0.0255 0.00132 0.0 0.0574
ENSG00000220785 MTMR9LP -421544 eQTL 0.000807 0.286 0.0851 0.0 0.0 0.0574
ENSG00000224066 AL049795.1 -386738 eQTL 0.00239 0.234 0.0769 0.00424 0.0028 0.0574

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000183615 \N -427146 6.8e-07 4.78e-07 8.51e-08 3.61e-07 1.05e-07 1.71e-07 3.44e-07 7.52e-08 2.66e-07 1.37e-07 3.47e-07 1.91e-07 6.08e-07 1.1e-07 9.12e-08 1.39e-07 9.3e-08 2.75e-07 1.5e-07 8.25e-08 1.39e-07 2.3e-07 2.2e-07 5.6e-08 5.75e-07 1.76e-07 1.87e-07 1.86e-07 1.87e-07 3.71e-07 1.86e-07 5.08e-08 5.2e-08 1.16e-07 3.38e-07 6.83e-08 1.18e-07 7.53e-08 5.54e-08 3.58e-08 3.27e-08 4.02e-07 2.84e-08 1.27e-08 5.84e-08 1.75e-08 1.04e-07 1.18e-08 4.68e-08
ENSG00000220785 MTMR9LP -421544 7.23e-07 4.93e-07 8.83e-08 3.87e-07 1.11e-07 1.74e-07 3.57e-07 7.46e-08 2.76e-07 1.39e-07 3.66e-07 1.96e-07 6.47e-07 1.1e-07 9.33e-08 1.46e-07 9.53e-08 2.83e-07 1.55e-07 8.11e-08 1.48e-07 2.3e-07 2.26e-07 6.65e-08 6.02e-07 1.82e-07 1.97e-07 1.88e-07 1.98e-07 3.93e-07 1.88e-07 4.75e-08 5.07e-08 1.25e-07 3.42e-07 7.92e-08 1.08e-07 7.75e-08 5.28e-08 3.05e-08 2.78e-08 4.16e-07 2.92e-08 1.29e-08 6.21e-08 1.81e-08 1.03e-07 1.22e-08 4.52e-08
ENSG00000222046 \N -389018 8.25e-07 6.26e-07 1.08e-07 4.31e-07 1.1e-07 2.24e-07 4.42e-07 9.07e-08 3.66e-07 1.78e-07 5.29e-07 2.8e-07 8.6e-07 1.52e-07 1.45e-07 1.92e-07 1.73e-07 3.12e-07 1.93e-07 1.28e-07 1.68e-07 2.96e-07 2.81e-07 1.15e-07 8.09e-07 2.07e-07 2.58e-07 2.57e-07 2.76e-07 5.67e-07 2.31e-07 7.91e-08 6.08e-08 1.52e-07 3.57e-07 1.16e-07 1.1e-07 1.08e-07 6.29e-08 2.2e-08 5.23e-08 6.15e-07 4.59e-08 2.67e-08 8.43e-08 1.29e-08 7.36e-08 2.41e-08 5.69e-08