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Genes within 1Mb (chr1:31811286:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -296770 sc-eQTL 1.98e-03 0.802 0.253 0.052 PB L2
ENSG00000060688 SNRNP40 514498 sc-eQTL 3.71e-01 0.215 0.24 0.052 PB L2
ENSG00000084623 EIF3I -410642 sc-eQTL 3.41e-01 0.148 0.155 0.052 PB L2
ENSG00000084652 TXLNA -368389 sc-eQTL 2.83e-03 0.606 0.198 0.052 PB L2
ENSG00000116478 HDAC1 -480797 sc-eQTL 7.95e-01 -0.0622 0.239 0.052 PB L2
ENSG00000121766 ZCCHC17 514304 sc-eQTL 7.87e-05 1.07 0.26 0.052 PB L2
ENSG00000121774 KHDRBS1 -202582 sc-eQTL 3.12e-01 0.218 0.214 0.052 PB L2
ENSG00000121775 TMEM39B -260745 sc-eQTL 3.18e-01 0.247 0.247 0.052 PB L2
ENSG00000134644 PUM1 745295 sc-eQTL 5.43e-01 -0.148 0.242 0.052 PB L2
ENSG00000160050 CCDC28B -389100 sc-eQTL 9.66e-01 0.0101 0.236 0.052 PB L2
ENSG00000160055 TMEM234 -411073 sc-eQTL 1.77e-01 0.366 0.269 0.052 PB L2
ENSG00000160058 BSDC1 -583445 sc-eQTL 4.32e-01 0.233 0.296 0.052 PB L2
ENSG00000162517 PEF1 166390 sc-eQTL 6.00e-02 0.465 0.245 0.052 PB L2
ENSG00000162520 SYNC -892310 sc-eQTL 2.40e-01 0.252 0.214 0.052 PB L2
ENSG00000162521 RBBP4 -839856 sc-eQTL 6.56e-01 0.0845 0.189 0.052 PB L2
ENSG00000175130 MARCKSL1 -524947 sc-eQTL 3.52e-01 0.182 0.195 0.052 PB L2
ENSG00000176261 ZBTB8OS -839617 sc-eQTL 4.97e-01 0.107 0.157 0.052 PB L2
ENSG00000182866 LCK -439953 sc-eQTL 1.66e-01 -0.34 0.244 0.052 PB L2
ENSG00000184007 PTP4A2 -133570 sc-eQTL 4.26e-02 0.34 0.166 0.052 PB L2
ENSG00000025800 KPNA6 -296770 sc-eQTL 9.54e-01 0.0152 0.262 0.052 gdT L2
ENSG00000060688 SNRNP40 514498 sc-eQTL 5.05e-01 -0.176 0.264 0.052 gdT L2
ENSG00000084623 EIF3I -410642 sc-eQTL 7.75e-01 -0.0722 0.253 0.052 gdT L2
ENSG00000084652 TXLNA -368389 sc-eQTL 1.92e-01 0.297 0.227 0.052 gdT L2
ENSG00000116478 HDAC1 -480797 sc-eQTL 9.86e-01 -0.00394 0.221 0.052 gdT L2
ENSG00000121766 ZCCHC17 514304 sc-eQTL 2.56e-01 0.258 0.226 0.052 gdT L2
ENSG00000121774 KHDRBS1 -202582 sc-eQTL 1.83e-01 0.282 0.211 0.052 gdT L2
ENSG00000121775 TMEM39B -260745 sc-eQTL 2.20e-02 0.54 0.233 0.052 gdT L2
ENSG00000134644 PUM1 745295 sc-eQTL 2.31e-01 0.28 0.233 0.052 gdT L2
ENSG00000160050 CCDC28B -389100 sc-eQTL 2.45e-01 0.238 0.204 0.052 gdT L2
ENSG00000160055 TMEM234 -411073 sc-eQTL 8.74e-01 0.0379 0.238 0.052 gdT L2
ENSG00000160058 BSDC1 -583445 sc-eQTL 3.80e-01 -0.215 0.244 0.052 gdT L2
ENSG00000162517 PEF1 166390 sc-eQTL 7.63e-01 -0.0703 0.233 0.052 gdT L2
ENSG00000162520 SYNC -892310 sc-eQTL 8.49e-01 -0.0454 0.237 0.052 gdT L2
ENSG00000162521 RBBP4 -839856 sc-eQTL 4.14e-01 -0.186 0.228 0.052 gdT L2
ENSG00000175130 MARCKSL1 -524947 sc-eQTL 1.02e-01 -0.359 0.218 0.052 gdT L2
ENSG00000176261 ZBTB8OS -839617 sc-eQTL 7.60e-01 -0.0761 0.248 0.052 gdT L2
ENSG00000182866 LCK -439953 sc-eQTL 8.70e-01 -0.0238 0.145 0.052 gdT L2
ENSG00000184007 PTP4A2 -133570 sc-eQTL 1.01e-01 -0.323 0.196 0.052 gdT L2
ENSG00000025800 KPNA6 -296770 sc-eQTL 2.18e-01 0.253 0.204 0.051 pDC L2
ENSG00000060688 SNRNP40 514498 sc-eQTL 6.31e-01 -0.102 0.211 0.051 pDC L2
ENSG00000084623 EIF3I -410642 sc-eQTL 3.72e-01 -0.176 0.197 0.051 pDC L2
ENSG00000084652 TXLNA -368389 sc-eQTL 5.73e-01 -0.114 0.202 0.051 pDC L2
ENSG00000116478 HDAC1 -480797 sc-eQTL 7.21e-01 -0.0747 0.209 0.051 pDC L2
ENSG00000121766 ZCCHC17 514304 sc-eQTL 7.82e-01 -0.0642 0.232 0.051 pDC L2
ENSG00000121774 KHDRBS1 -202582 sc-eQTL 5.67e-01 0.104 0.181 0.051 pDC L2
ENSG00000121775 TMEM39B -260745 sc-eQTL 5.65e-01 -0.112 0.193 0.051 pDC L2
ENSG00000134644 PUM1 745295 sc-eQTL 6.54e-01 0.0863 0.192 0.051 pDC L2
ENSG00000160050 CCDC28B -389100 sc-eQTL 7.60e-01 -0.0593 0.194 0.051 pDC L2
ENSG00000160055 TMEM234 -411073 sc-eQTL 7.13e-01 -0.0822 0.223 0.051 pDC L2
ENSG00000160058 BSDC1 -583445 sc-eQTL 2.57e-01 -0.243 0.213 0.051 pDC L2
ENSG00000160062 ZBTB8A -728141 sc-eQTL 4.09e-01 -0.157 0.19 0.051 pDC L2
ENSG00000162517 PEF1 166390 sc-eQTL 5.35e-01 0.144 0.232 0.051 pDC L2
ENSG00000162520 SYNC -892310 sc-eQTL 8.74e-01 -0.0319 0.201 0.051 pDC L2
ENSG00000162521 RBBP4 -839856 sc-eQTL 8.34e-01 -0.0307 0.146 0.051 pDC L2
ENSG00000162522 KIAA1522 -930544 sc-eQTL 9.10e-01 0.0231 0.204 0.051 pDC L2
ENSG00000168528 SERINC2 401721 sc-eQTL 5.98e-01 -0.114 0.217 0.051 pDC L2
ENSG00000175130 MARCKSL1 -524947 sc-eQTL 7.97e-03 -0.349 0.13 0.051 pDC L2
ENSG00000176261 ZBTB8OS -839617 sc-eQTL 5.44e-01 -0.13 0.213 0.051 pDC L2
ENSG00000182866 LCK -439953 sc-eQTL 6.27e-01 -0.0801 0.164 0.051 pDC L2
ENSG00000184007 PTP4A2 -133570 sc-eQTL 1.85e-01 -0.23 0.173 0.051 pDC L2
ENSG00000225828 FAM229A -552992 sc-eQTL 1.21e-01 0.328 0.21 0.051 pDC L2
ENSG00000284543 LINC01226 305060 sc-eQTL 5.64e-01 -0.0972 0.168 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162520 SYNC -892310 eQTL 0.052 -0.131 0.0674 0.00262 0.0 0.0574
ENSG00000182866 LCK -439953 eQTL 0.101 0.0269 0.0164 0.001 0.0 0.0574
ENSG00000184007 PTP4A2 -133570 eQTL 0.0195 -0.06 0.0257 0.00131 0.0 0.0574
ENSG00000220785 MTMR9LP -430334 eQTL 0.00119 0.278 0.0856 0.0 0.0 0.0574
ENSG00000224066 AL049795.1 -395528 eQTL 0.0026 0.233 0.0773 0.00409 0.00263 0.0574

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000183615 \N -435936 1.2e-06 8.33e-07 3.08e-07 4.06e-07 1.54e-07 3.18e-07 7.54e-07 2.88e-07 8.7e-07 3.11e-07 1.09e-06 5.73e-07 1.15e-06 2.1e-07 4.3e-07 5.49e-07 7.39e-07 5.12e-07 3.79e-07 3.72e-07 2.72e-07 6.91e-07 5.67e-07 4.38e-07 1.42e-06 2.44e-07 5.76e-07 4.11e-07 6.85e-07 9.21e-07 4.39e-07 3.85e-08 1.05e-07 2.31e-07 3.26e-07 2.94e-07 2.14e-07 1.42e-07 1.12e-07 1.8e-08 1.45e-07 8.03e-07 5.66e-08 5.77e-09 1.61e-07 4.53e-08 1.91e-07 8.66e-08 9.5e-08
ENSG00000220785 MTMR9LP -430334 1.27e-06 8.69e-07 2.95e-07 3.68e-07 1.64e-07 3.12e-07 7.53e-07 2.88e-07 8.61e-07 3.13e-07 1.13e-06 5.68e-07 1.2e-06 2.14e-07 4.43e-07 5.69e-07 7.62e-07 5.26e-07 3.95e-07 3.99e-07 2.86e-07 7.06e-07 5.81e-07 4.79e-07 1.47e-06 2.4e-07 6.23e-07 4.29e-07 7.07e-07 9.25e-07 4.47e-07 3.86e-08 1.08e-07 2.35e-07 3.41e-07 2.99e-07 2.46e-07 1.38e-07 1.14e-07 1.84e-08 1.67e-07 8.79e-07 5.77e-08 5.87e-09 1.73e-07 6.01e-08 1.7e-07 8.81e-08 8.28e-08