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Genes within 1Mb (chr1:31783692:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -324364 sc-eQTL 6.83e-01 0.0985 0.241 0.051 B_Activated L2
ENSG00000060688 SNRNP40 486904 sc-eQTL 8.10e-01 -0.0568 0.236 0.051 B_Activated L2
ENSG00000084623 EIF3I -438236 sc-eQTL 6.67e-01 0.0976 0.227 0.051 B_Activated L2
ENSG00000084652 TXLNA -395983 sc-eQTL 1.79e-01 0.305 0.226 0.051 B_Activated L2
ENSG00000116478 HDAC1 -508391 sc-eQTL 6.20e-01 -0.107 0.216 0.051 B_Activated L2
ENSG00000121766 ZCCHC17 486710 sc-eQTL 1.31e-01 -0.359 0.237 0.051 B_Activated L2
ENSG00000121774 KHDRBS1 -230176 sc-eQTL 4.72e-01 0.155 0.215 0.051 B_Activated L2
ENSG00000121775 TMEM39B -288339 sc-eQTL 9.84e-01 0.00464 0.226 0.051 B_Activated L2
ENSG00000134644 PUM1 717701 sc-eQTL 1.11e-01 -0.353 0.22 0.051 B_Activated L2
ENSG00000160050 CCDC28B -416694 sc-eQTL 8.98e-02 0.343 0.201 0.051 B_Activated L2
ENSG00000160055 TMEM234 -438667 sc-eQTL 7.99e-01 -0.0569 0.223 0.051 B_Activated L2
ENSG00000160058 BSDC1 -611039 sc-eQTL 3.62e-02 -0.503 0.238 0.051 B_Activated L2
ENSG00000162517 PEF1 138796 sc-eQTL 7.21e-01 -0.0822 0.23 0.051 B_Activated L2
ENSG00000162520 SYNC -919904 sc-eQTL 4.36e-01 0.185 0.237 0.051 B_Activated L2
ENSG00000162521 RBBP4 -867450 sc-eQTL 7.73e-02 0.404 0.227 0.051 B_Activated L2
ENSG00000175130 MARCKSL1 -552541 sc-eQTL 4.20e-01 0.17 0.21 0.051 B_Activated L2
ENSG00000176261 ZBTB8OS -867211 sc-eQTL 2.07e-01 0.274 0.217 0.051 B_Activated L2
ENSG00000182866 LCK -467547 sc-eQTL 8.88e-01 -0.0222 0.158 0.051 B_Activated L2
ENSG00000184007 PTP4A2 -161164 sc-eQTL 5.63e-01 0.0967 0.167 0.051 B_Activated L2
ENSG00000025800 KPNA6 -324364 sc-eQTL 6.22e-01 0.11 0.222 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 486904 sc-eQTL 1.81e-01 -0.287 0.214 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -438236 sc-eQTL 8.69e-01 0.0325 0.196 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -395983 sc-eQTL 3.49e-01 0.185 0.197 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -508391 sc-eQTL 9.17e-02 -0.323 0.191 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 486710 sc-eQTL 2.76e-01 0.224 0.205 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -230176 sc-eQTL 3.74e-01 -0.167 0.188 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -288339 sc-eQTL 1.29e-01 0.313 0.205 0.05 CD8_TEM L2
ENSG00000134644 PUM1 717701 sc-eQTL 9.65e-01 -0.00915 0.211 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -416694 sc-eQTL 8.68e-01 0.0313 0.187 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -438667 sc-eQTL 9.35e-01 0.0172 0.21 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -611039 sc-eQTL 2.66e-01 -0.243 0.218 0.05 CD8_TEM L2
ENSG00000162517 PEF1 138796 sc-eQTL 8.65e-02 -0.319 0.185 0.05 CD8_TEM L2
ENSG00000162520 SYNC -919904 sc-eQTL 7.13e-01 -0.0766 0.208 0.05 CD8_TEM L2
ENSG00000162521 RBBP4 -867450 sc-eQTL 9.13e-01 0.0204 0.186 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -552541 sc-eQTL 2.95e-01 -0.175 0.166 0.05 CD8_TEM L2
ENSG00000176261 ZBTB8OS -867211 sc-eQTL 2.82e-01 0.206 0.191 0.05 CD8_TEM L2
ENSG00000182866 LCK -467547 sc-eQTL 2.23e-01 -0.126 0.103 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -161164 sc-eQTL 9.69e-04 -0.533 0.159 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -324364 sc-eQTL 1.29e-01 0.38 0.249 0.052 PB L2
ENSG00000060688 SNRNP40 486904 sc-eQTL 1.29e-01 -0.346 0.226 0.052 PB L2
ENSG00000084623 EIF3I -438236 sc-eQTL 9.86e-01 -0.00254 0.148 0.052 PB L2
ENSG00000084652 TXLNA -395983 sc-eQTL 3.10e-01 0.199 0.195 0.052 PB L2
ENSG00000116478 HDAC1 -508391 sc-eQTL 6.73e-01 -0.0962 0.227 0.052 PB L2
ENSG00000121766 ZCCHC17 486710 sc-eQTL 6.66e-01 -0.115 0.265 0.052 PB L2
ENSG00000121774 KHDRBS1 -230176 sc-eQTL 8.37e-01 -0.0423 0.205 0.052 PB L2
ENSG00000121775 TMEM39B -288339 sc-eQTL 7.78e-01 0.0665 0.236 0.052 PB L2
ENSG00000134644 PUM1 717701 sc-eQTL 9.50e-02 -0.383 0.228 0.052 PB L2
ENSG00000160050 CCDC28B -416694 sc-eQTL 4.81e-01 -0.158 0.224 0.052 PB L2
ENSG00000160055 TMEM234 -438667 sc-eQTL 6.95e-01 0.101 0.258 0.052 PB L2
ENSG00000160058 BSDC1 -611039 sc-eQTL 4.59e-01 0.209 0.281 0.052 PB L2
ENSG00000162517 PEF1 138796 sc-eQTL 7.54e-01 0.0743 0.236 0.052 PB L2
ENSG00000162520 SYNC -919904 sc-eQTL 9.93e-02 -0.336 0.202 0.052 PB L2
ENSG00000162521 RBBP4 -867450 sc-eQTL 9.52e-01 0.0109 0.18 0.052 PB L2
ENSG00000175130 MARCKSL1 -552541 sc-eQTL 5.61e-01 -0.108 0.186 0.052 PB L2
ENSG00000176261 ZBTB8OS -867211 sc-eQTL 1.18e-01 -0.233 0.148 0.052 PB L2
ENSG00000182866 LCK -467547 sc-eQTL 8.21e-01 0.0532 0.234 0.052 PB L2
ENSG00000184007 PTP4A2 -161164 sc-eQTL 1.31e-01 0.242 0.159 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121753 ADGRB2 18799 eQTL 1.27e-02 -0.134 0.0535 0.00213 0.0 0.0348
ENSG00000162512 SDC3 874934 eQTL 0.00113 -0.214 0.0654 0.0 0.0 0.0348
ENSG00000162520 SYNC -919904 eQTL 0.0505 0.163 0.0832 0.00254 0.0 0.0348

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 ADGRB2 18799 2.13e-05 2.54e-05 3.89e-06 1.27e-05 3.32e-06 9.14e-06 2.99e-05 3.46e-06 2.01e-05 9.96e-06 2.71e-05 1.01e-05 3.69e-05 9.56e-06 5.36e-06 1.17e-05 1.1e-05 1.71e-05 6e-06 4.89e-06 9.55e-06 2.15e-05 2.21e-05 6.06e-06 3.2e-05 5.37e-06 8.66e-06 8.92e-06 2.28e-05 1.93e-05 1.35e-05 1.38e-06 1.92e-06 4.95e-06 8.27e-06 4.5e-06 2.04e-06 2.74e-06 3.44e-06 2.44e-06 1.29e-06 2.87e-05 2.68e-06 2.36e-07 1.85e-06 2.74e-06 3.24e-06 1.27e-06 1.1e-06
ENSG00000162512 SDC3 874934 2.64e-07 1.11e-07 3.56e-08 1.8e-07 8.92e-08 9.3e-08 1.41e-07 5.33e-08 1.41e-07 4.4e-08 1.56e-07 7.78e-08 1.3e-07 6.38e-08 5.99e-08 7.5e-08 4.48e-08 1.14e-07 5.36e-08 4.42e-08 1.04e-07 1.27e-07 1.32e-07 4.13e-08 1.33e-07 1.19e-07 1.12e-07 9.36e-08 1.02e-07 1.12e-07 9.73e-08 3.89e-08 3.3e-08 8.65e-08 8.98e-08 3.6e-08 5.05e-08 9.49e-08 7.2e-08 3.87e-08 5.34e-08 1.31e-07 4.04e-08 2.24e-08 5.87e-08 1.66e-08 1.25e-07 3.83e-09 4.94e-08
ENSG00000224066 \N -423122 5.59e-07 3.11e-07 8.02e-08 3.62e-07 1.06e-07 1.19e-07 3.44e-07 7.46e-08 2.53e-07 1.5e-07 3.92e-07 2.22e-07 4.54e-07 1.01e-07 1.48e-07 1.39e-07 8.74e-08 2.75e-07 1.51e-07 9.01e-08 1.52e-07 2.3e-07 2.67e-07 6.52e-08 4.11e-07 2.01e-07 1.74e-07 1.97e-07 1.6e-07 2.75e-07 1.95e-07 8.48e-08 5.73e-08 1.24e-07 1.97e-07 8.17e-08 1.06e-07 5.92e-08 4.9e-08 3.05e-08 1.22e-07 3.27e-07 3.4e-08 1.08e-08 7.93e-08 1.3e-08 9.07e-08 3.25e-09 5.35e-08
ENSG00000228634 \N -149328 3.61e-06 3.67e-06 4.65e-07 2.02e-06 4.62e-07 7.53e-07 2.29e-06 7.12e-07 2.28e-06 1.13e-06 2.98e-06 1.65e-06 4.11e-06 1.35e-06 8.88e-07 1.77e-06 1.56e-06 2.25e-06 1.38e-06 1.28e-06 1.28e-06 3.03e-06 2.88e-06 1.01e-06 3.97e-06 1.09e-06 1.47e-06 1.75e-06 2.49e-06 2.52e-06 2.04e-06 3.11e-07 5.8e-07 1.2e-06 1.69e-06 9.35e-07 9.22e-07 4.4e-07 1.2e-06 3.98e-07 1.96e-07 4.18e-06 5.92e-07 1.66e-07 3.45e-07 4.02e-07 5.32e-07 2.32e-07 2.04e-07