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Genes within 1Mb (chr1:31781495:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -326561 sc-eQTL 6.83e-01 0.0985 0.241 0.051 B_Activated L2
ENSG00000060688 SNRNP40 484707 sc-eQTL 8.10e-01 -0.0568 0.236 0.051 B_Activated L2
ENSG00000084623 EIF3I -440433 sc-eQTL 6.67e-01 0.0976 0.227 0.051 B_Activated L2
ENSG00000084652 TXLNA -398180 sc-eQTL 1.79e-01 0.305 0.226 0.051 B_Activated L2
ENSG00000116478 HDAC1 -510588 sc-eQTL 6.20e-01 -0.107 0.216 0.051 B_Activated L2
ENSG00000121766 ZCCHC17 484513 sc-eQTL 1.31e-01 -0.359 0.237 0.051 B_Activated L2
ENSG00000121774 KHDRBS1 -232373 sc-eQTL 4.72e-01 0.155 0.215 0.051 B_Activated L2
ENSG00000121775 TMEM39B -290536 sc-eQTL 9.84e-01 0.00464 0.226 0.051 B_Activated L2
ENSG00000134644 PUM1 715504 sc-eQTL 1.11e-01 -0.353 0.22 0.051 B_Activated L2
ENSG00000160050 CCDC28B -418891 sc-eQTL 8.98e-02 0.343 0.201 0.051 B_Activated L2
ENSG00000160055 TMEM234 -440864 sc-eQTL 7.99e-01 -0.0569 0.223 0.051 B_Activated L2
ENSG00000160058 BSDC1 -613236 sc-eQTL 3.62e-02 -0.503 0.238 0.051 B_Activated L2
ENSG00000162517 PEF1 136599 sc-eQTL 7.21e-01 -0.0822 0.23 0.051 B_Activated L2
ENSG00000162520 SYNC -922101 sc-eQTL 4.36e-01 0.185 0.237 0.051 B_Activated L2
ENSG00000162521 RBBP4 -869647 sc-eQTL 7.73e-02 0.404 0.227 0.051 B_Activated L2
ENSG00000175130 MARCKSL1 -554738 sc-eQTL 4.20e-01 0.17 0.21 0.051 B_Activated L2
ENSG00000176261 ZBTB8OS -869408 sc-eQTL 2.07e-01 0.274 0.217 0.051 B_Activated L2
ENSG00000182866 LCK -469744 sc-eQTL 8.88e-01 -0.0222 0.158 0.051 B_Activated L2
ENSG00000184007 PTP4A2 -163361 sc-eQTL 5.63e-01 0.0967 0.167 0.051 B_Activated L2
ENSG00000025800 KPNA6 -326561 sc-eQTL 6.22e-01 0.11 0.222 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 484707 sc-eQTL 1.81e-01 -0.287 0.214 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -440433 sc-eQTL 8.69e-01 0.0325 0.196 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -398180 sc-eQTL 3.49e-01 0.185 0.197 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -510588 sc-eQTL 9.17e-02 -0.323 0.191 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 484513 sc-eQTL 2.76e-01 0.224 0.205 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -232373 sc-eQTL 3.74e-01 -0.167 0.188 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -290536 sc-eQTL 1.29e-01 0.313 0.205 0.05 CD8_TEM L2
ENSG00000134644 PUM1 715504 sc-eQTL 9.65e-01 -0.00915 0.211 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -418891 sc-eQTL 8.68e-01 0.0313 0.187 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -440864 sc-eQTL 9.35e-01 0.0172 0.21 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -613236 sc-eQTL 2.66e-01 -0.243 0.218 0.05 CD8_TEM L2
ENSG00000162517 PEF1 136599 sc-eQTL 8.65e-02 -0.319 0.185 0.05 CD8_TEM L2
ENSG00000162520 SYNC -922101 sc-eQTL 7.13e-01 -0.0766 0.208 0.05 CD8_TEM L2
ENSG00000162521 RBBP4 -869647 sc-eQTL 9.13e-01 0.0204 0.186 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -554738 sc-eQTL 2.95e-01 -0.175 0.166 0.05 CD8_TEM L2
ENSG00000176261 ZBTB8OS -869408 sc-eQTL 2.82e-01 0.206 0.191 0.05 CD8_TEM L2
ENSG00000182866 LCK -469744 sc-eQTL 2.23e-01 -0.126 0.103 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -163361 sc-eQTL 9.69e-04 -0.533 0.159 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -326561 sc-eQTL 1.29e-01 0.38 0.249 0.052 PB L2
ENSG00000060688 SNRNP40 484707 sc-eQTL 1.29e-01 -0.346 0.226 0.052 PB L2
ENSG00000084623 EIF3I -440433 sc-eQTL 9.86e-01 -0.00254 0.148 0.052 PB L2
ENSG00000084652 TXLNA -398180 sc-eQTL 3.10e-01 0.199 0.195 0.052 PB L2
ENSG00000116478 HDAC1 -510588 sc-eQTL 6.73e-01 -0.0962 0.227 0.052 PB L2
ENSG00000121766 ZCCHC17 484513 sc-eQTL 6.66e-01 -0.115 0.265 0.052 PB L2
ENSG00000121774 KHDRBS1 -232373 sc-eQTL 8.37e-01 -0.0423 0.205 0.052 PB L2
ENSG00000121775 TMEM39B -290536 sc-eQTL 7.78e-01 0.0665 0.236 0.052 PB L2
ENSG00000134644 PUM1 715504 sc-eQTL 9.50e-02 -0.383 0.228 0.052 PB L2
ENSG00000160050 CCDC28B -418891 sc-eQTL 4.81e-01 -0.158 0.224 0.052 PB L2
ENSG00000160055 TMEM234 -440864 sc-eQTL 6.95e-01 0.101 0.258 0.052 PB L2
ENSG00000160058 BSDC1 -613236 sc-eQTL 4.59e-01 0.209 0.281 0.052 PB L2
ENSG00000162517 PEF1 136599 sc-eQTL 7.54e-01 0.0743 0.236 0.052 PB L2
ENSG00000162520 SYNC -922101 sc-eQTL 9.93e-02 -0.336 0.202 0.052 PB L2
ENSG00000162521 RBBP4 -869647 sc-eQTL 9.52e-01 0.0109 0.18 0.052 PB L2
ENSG00000175130 MARCKSL1 -554738 sc-eQTL 5.61e-01 -0.108 0.186 0.052 PB L2
ENSG00000176261 ZBTB8OS -869408 sc-eQTL 1.18e-01 -0.233 0.148 0.052 PB L2
ENSG00000182866 LCK -469744 sc-eQTL 8.21e-01 0.0532 0.234 0.052 PB L2
ENSG00000184007 PTP4A2 -163361 sc-eQTL 1.31e-01 0.242 0.159 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121753 ADGRB2 16602 eQTL 1.75e-02 -0.127 0.0532 0.00179 0.0 0.0353
ENSG00000162512 SDC3 872737 eQTL 0.000785 -0.219 0.0651 0.0 0.0 0.0353
ENSG00000162520 SYNC -922101 eQTL 0.0528 0.161 0.0828 0.00239 0.0 0.0353

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 ADGRB2 16602 3.69e-05 3.29e-05 6.31e-06 1.55e-05 5.94e-06 1.48e-05 4.51e-05 4.96e-06 3.18e-05 1.57e-05 3.9e-05 1.82e-05 4.8e-05 1.41e-05 7.14e-06 2e-05 1.77e-05 2.66e-05 7.91e-06 6.75e-06 1.59e-05 3.34e-05 3.24e-05 8.8e-06 4.61e-05 8.26e-06 1.47e-05 1.29e-05 3.26e-05 2.41e-05 2.07e-05 1.63e-06 2.78e-06 7.33e-06 1.16e-05 5.84e-06 3.19e-06 3.17e-06 4.84e-06 3.36e-06 1.71e-06 3.84e-05 3.74e-06 3.62e-07 2.49e-06 4.15e-06 4.08e-06 1.73e-06 1.49e-06
ENSG00000162512 SDC3 872737 2.67e-07 1.34e-07 4.47e-08 1.9e-07 9.25e-08 9.8e-08 1.67e-07 5.4e-08 1.45e-07 5.42e-08 1.54e-07 9e-08 1.47e-07 7.37e-08 5.36e-08 7.36e-08 3.98e-08 1.33e-07 7.18e-08 4.8e-08 1.25e-07 1.27e-07 1.44e-07 2.95e-08 1.65e-07 1.14e-07 1.07e-07 1.06e-07 1.16e-07 1.07e-07 9.92e-08 3.59e-08 3.61e-08 9.52e-08 7.36e-08 3.14e-08 4.49e-08 9.22e-08 6.59e-08 3.67e-08 4.39e-08 1.46e-07 4.87e-08 7.2e-09 5.19e-08 1.83e-08 1.19e-07 1.93e-09 5.04e-08
ENSG00000224066 \N -425319 1.24e-06 8.23e-07 1.2e-07 4.36e-07 9.33e-08 2.77e-07 7.32e-07 1.37e-07 5.88e-07 2.87e-07 9.46e-07 5.08e-07 9.65e-07 2.05e-07 4.6e-07 3.68e-07 3.75e-07 4.4e-07 3.66e-07 2.27e-07 2.86e-07 5.2e-07 4.01e-07 2.19e-07 1.54e-06 2.68e-07 4.34e-07 4.75e-07 5.41e-07 6.19e-07 3.68e-07 3.77e-08 5.63e-08 2.31e-07 3.4e-07 1.52e-07 1.93e-07 8.04e-08 7.81e-08 9.44e-09 6.39e-08 7.45e-07 5.04e-08 2.68e-08 1.17e-07 1.35e-08 1.28e-07 8.16e-08 6.15e-08
ENSG00000228634 \N -151525 4.81e-06 5.09e-06 7.94e-07 2.41e-06 8.54e-07 1.61e-06 5.6e-06 1.03e-06 5.25e-06 2.42e-06 5.18e-06 3.52e-06 7.44e-06 1.75e-06 1.29e-06 3.85e-06 1.8e-06 3.53e-06 1.36e-06 9.54e-07 2.8e-06 4.53e-06 4.09e-06 1.71e-06 7.87e-06 1.33e-06 2.43e-06 1.6e-06 4.21e-06 3.62e-06 2.7e-06 5.84e-07 7.52e-07 1.73e-06 1.95e-06 8.52e-07 9.24e-07 4.74e-07 1.07e-06 4.88e-07 2.23e-07 5.69e-06 8.6e-07 1.81e-07 4.33e-07 4.3e-07 1.05e-06 4.27e-07 1.94e-07