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Genes within 1Mb (chr1:31778334:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -329722 sc-eQTL 6.83e-01 0.0985 0.241 0.051 B_Activated L2
ENSG00000060688 SNRNP40 481546 sc-eQTL 8.10e-01 -0.0568 0.236 0.051 B_Activated L2
ENSG00000084623 EIF3I -443594 sc-eQTL 6.67e-01 0.0976 0.227 0.051 B_Activated L2
ENSG00000084652 TXLNA -401341 sc-eQTL 1.79e-01 0.305 0.226 0.051 B_Activated L2
ENSG00000116478 HDAC1 -513749 sc-eQTL 6.20e-01 -0.107 0.216 0.051 B_Activated L2
ENSG00000121766 ZCCHC17 481352 sc-eQTL 1.31e-01 -0.359 0.237 0.051 B_Activated L2
ENSG00000121774 KHDRBS1 -235534 sc-eQTL 4.72e-01 0.155 0.215 0.051 B_Activated L2
ENSG00000121775 TMEM39B -293697 sc-eQTL 9.84e-01 0.00464 0.226 0.051 B_Activated L2
ENSG00000134644 PUM1 712343 sc-eQTL 1.11e-01 -0.353 0.22 0.051 B_Activated L2
ENSG00000160050 CCDC28B -422052 sc-eQTL 8.98e-02 0.343 0.201 0.051 B_Activated L2
ENSG00000160055 TMEM234 -444025 sc-eQTL 7.99e-01 -0.0569 0.223 0.051 B_Activated L2
ENSG00000160058 BSDC1 -616397 sc-eQTL 3.62e-02 -0.503 0.238 0.051 B_Activated L2
ENSG00000162517 PEF1 133438 sc-eQTL 7.21e-01 -0.0822 0.23 0.051 B_Activated L2
ENSG00000162520 SYNC -925262 sc-eQTL 4.36e-01 0.185 0.237 0.051 B_Activated L2
ENSG00000162521 RBBP4 -872808 sc-eQTL 7.73e-02 0.404 0.227 0.051 B_Activated L2
ENSG00000175130 MARCKSL1 -557899 sc-eQTL 4.20e-01 0.17 0.21 0.051 B_Activated L2
ENSG00000176261 ZBTB8OS -872569 sc-eQTL 2.07e-01 0.274 0.217 0.051 B_Activated L2
ENSG00000182866 LCK -472905 sc-eQTL 8.88e-01 -0.0222 0.158 0.051 B_Activated L2
ENSG00000184007 PTP4A2 -166522 sc-eQTL 5.63e-01 0.0967 0.167 0.051 B_Activated L2
ENSG00000025800 KPNA6 -329722 sc-eQTL 6.22e-01 0.11 0.222 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 481546 sc-eQTL 1.81e-01 -0.287 0.214 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -443594 sc-eQTL 8.69e-01 0.0325 0.196 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -401341 sc-eQTL 3.49e-01 0.185 0.197 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -513749 sc-eQTL 9.17e-02 -0.323 0.191 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 481352 sc-eQTL 2.76e-01 0.224 0.205 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -235534 sc-eQTL 3.74e-01 -0.167 0.188 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -293697 sc-eQTL 1.29e-01 0.313 0.205 0.05 CD8_TEM L2
ENSG00000134644 PUM1 712343 sc-eQTL 9.65e-01 -0.00915 0.211 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -422052 sc-eQTL 8.68e-01 0.0313 0.187 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -444025 sc-eQTL 9.35e-01 0.0172 0.21 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -616397 sc-eQTL 2.66e-01 -0.243 0.218 0.05 CD8_TEM L2
ENSG00000162517 PEF1 133438 sc-eQTL 8.65e-02 -0.319 0.185 0.05 CD8_TEM L2
ENSG00000162520 SYNC -925262 sc-eQTL 7.13e-01 -0.0766 0.208 0.05 CD8_TEM L2
ENSG00000162521 RBBP4 -872808 sc-eQTL 9.13e-01 0.0204 0.186 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -557899 sc-eQTL 2.95e-01 -0.175 0.166 0.05 CD8_TEM L2
ENSG00000176261 ZBTB8OS -872569 sc-eQTL 2.82e-01 0.206 0.191 0.05 CD8_TEM L2
ENSG00000182866 LCK -472905 sc-eQTL 2.23e-01 -0.126 0.103 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -166522 sc-eQTL 9.69e-04 -0.533 0.159 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -329722 sc-eQTL 1.29e-01 0.38 0.249 0.052 PB L2
ENSG00000060688 SNRNP40 481546 sc-eQTL 1.29e-01 -0.346 0.226 0.052 PB L2
ENSG00000084623 EIF3I -443594 sc-eQTL 9.86e-01 -0.00254 0.148 0.052 PB L2
ENSG00000084652 TXLNA -401341 sc-eQTL 3.10e-01 0.199 0.195 0.052 PB L2
ENSG00000116478 HDAC1 -513749 sc-eQTL 6.73e-01 -0.0962 0.227 0.052 PB L2
ENSG00000121766 ZCCHC17 481352 sc-eQTL 6.66e-01 -0.115 0.265 0.052 PB L2
ENSG00000121774 KHDRBS1 -235534 sc-eQTL 8.37e-01 -0.0423 0.205 0.052 PB L2
ENSG00000121775 TMEM39B -293697 sc-eQTL 7.78e-01 0.0665 0.236 0.052 PB L2
ENSG00000134644 PUM1 712343 sc-eQTL 9.50e-02 -0.383 0.228 0.052 PB L2
ENSG00000160050 CCDC28B -422052 sc-eQTL 4.81e-01 -0.158 0.224 0.052 PB L2
ENSG00000160055 TMEM234 -444025 sc-eQTL 6.95e-01 0.101 0.258 0.052 PB L2
ENSG00000160058 BSDC1 -616397 sc-eQTL 4.59e-01 0.209 0.281 0.052 PB L2
ENSG00000162517 PEF1 133438 sc-eQTL 7.54e-01 0.0743 0.236 0.052 PB L2
ENSG00000162520 SYNC -925262 sc-eQTL 9.93e-02 -0.336 0.202 0.052 PB L2
ENSG00000162521 RBBP4 -872808 sc-eQTL 9.52e-01 0.0109 0.18 0.052 PB L2
ENSG00000175130 MARCKSL1 -557899 sc-eQTL 5.61e-01 -0.108 0.186 0.052 PB L2
ENSG00000176261 ZBTB8OS -872569 sc-eQTL 1.18e-01 -0.233 0.148 0.052 PB L2
ENSG00000182866 LCK -472905 sc-eQTL 8.21e-01 0.0532 0.234 0.052 PB L2
ENSG00000184007 PTP4A2 -166522 sc-eQTL 1.31e-01 0.242 0.159 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121753 ADGRB2 13441 eQTL 1.67e-02 -0.125 0.052 0.00183 0.0 0.0373
ENSG00000162512 SDC3 869576 eQTL 0.00331 -0.188 0.0637 0.0 0.0 0.0373
ENSG00000162520 SYNC -925262 eQTL 0.0626 0.151 0.0809 0.00203 0.0 0.0373

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 ADGRB2 13441 2.17e-05 2.65e-05 4.95e-06 1.35e-05 4.08e-06 1.12e-05 3.46e-05 3.71e-06 2.29e-05 1.16e-05 3.02e-05 1.21e-05 3.92e-05 1.09e-05 5.8e-06 1.39e-05 1.35e-05 1.97e-05 6.85e-06 5.63e-06 1.13e-05 2.46e-05 2.49e-05 7.87e-06 3.68e-05 6.16e-06 1.02e-05 9.63e-06 2.65e-05 2.47e-05 1.53e-05 1.54e-06 2.31e-06 6.43e-06 9.49e-06 5.17e-06 2.78e-06 2.99e-06 4.25e-06 3.08e-06 1.67e-06 3.06e-05 2.76e-06 3.62e-07 2.1e-06 3.23e-06 3.49e-06 1.41e-06 1.52e-06
ENSG00000162512 SDC3 869576 2.67e-07 1.25e-07 4.08e-08 1.82e-07 9.16e-08 9.8e-08 1.44e-07 5.37e-08 1.44e-07 4.57e-08 1.6e-07 8.59e-08 1.41e-07 6.56e-08 5.99e-08 7.17e-08 3.98e-08 1.21e-07 5.82e-08 4.04e-08 1.08e-07 1.27e-07 1.34e-07 3.49e-08 1.37e-07 1.14e-07 1.06e-07 9.36e-08 1.08e-07 1.07e-07 9.64e-08 3.08e-08 3.56e-08 8.55e-08 7.66e-08 3.94e-08 5.08e-08 9.23e-08 6.37e-08 3.71e-08 4.36e-08 1.35e-07 4.52e-08 1.07e-08 5.15e-08 1.84e-08 1.19e-07 3.79e-09 4.88e-08
ENSG00000224066 \N -428480 5.85e-07 4.93e-07 1.05e-07 3.58e-07 1.07e-07 1.74e-07 4.68e-07 9.69e-08 2.81e-07 1.78e-07 4.39e-07 3.11e-07 6e-07 1.1e-07 1.32e-07 1.61e-07 2.07e-07 3.12e-07 1.69e-07 1.24e-07 1.8e-07 2.96e-07 3.03e-07 1.27e-07 6.02e-07 2.32e-07 2.22e-07 1.95e-07 2.66e-07 4.51e-07 2.19e-07 5.69e-08 5.68e-08 1.19e-07 3e-07 6.73e-08 9.9e-08 7.64e-08 5.67e-08 5.77e-08 5.23e-08 3.85e-07 1.6e-08 1.94e-08 1.01e-07 1.59e-08 9.98e-08 1.11e-08 5.05e-08
ENSG00000228634 \N -154686 2.23e-06 2.88e-06 3.19e-07 2.01e-06 4.65e-07 8.24e-07 2.08e-06 6.45e-07 1.92e-06 9.48e-07 2.49e-06 1.43e-06 3.54e-06 1.36e-06 7e-07 1.51e-06 1.34e-06 2.18e-06 9.43e-07 1.29e-06 1.07e-06 2.95e-06 2.38e-06 1.01e-06 4.06e-06 1.36e-06 1.31e-06 1.42e-06 2.07e-06 2.24e-06 1.84e-06 3.11e-07 5.36e-07 1.23e-06 1.35e-06 9.46e-07 7.59e-07 4.21e-07 1.18e-06 3.34e-07 3.05e-07 3.4e-06 5.1e-07 1.89e-07 3.41e-07 3.35e-07 5.48e-07 2.4e-07 2.22e-07