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Genes within 1Mb (chr1:31740955:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -367101 sc-eQTL 5.50e-01 0.143 0.238 0.054 B_Activated L2
ENSG00000060688 SNRNP40 444167 sc-eQTL 4.89e-01 -0.162 0.234 0.054 B_Activated L2
ENSG00000084623 EIF3I -480973 sc-eQTL 8.64e-01 -0.0386 0.224 0.054 B_Activated L2
ENSG00000084652 TXLNA -438720 sc-eQTL 1.05e-01 0.363 0.223 0.054 B_Activated L2
ENSG00000116478 HDAC1 -551128 sc-eQTL 4.10e-01 -0.176 0.213 0.054 B_Activated L2
ENSG00000121766 ZCCHC17 443973 sc-eQTL 8.35e-02 -0.407 0.234 0.054 B_Activated L2
ENSG00000121774 KHDRBS1 -272913 sc-eQTL 2.36e-01 0.252 0.212 0.054 B_Activated L2
ENSG00000121775 TMEM39B -331076 sc-eQTL 8.37e-01 0.046 0.224 0.054 B_Activated L2
ENSG00000134644 PUM1 674964 sc-eQTL 4.59e-01 -0.162 0.219 0.054 B_Activated L2
ENSG00000160050 CCDC28B -459431 sc-eQTL 5.79e-02 0.379 0.198 0.054 B_Activated L2
ENSG00000160055 TMEM234 -481404 sc-eQTL 6.16e-01 0.111 0.22 0.054 B_Activated L2
ENSG00000160058 BSDC1 -653776 sc-eQTL 1.90e-01 -0.313 0.238 0.054 B_Activated L2
ENSG00000162511 LAPTM5 983181 sc-eQTL 5.72e-02 0.253 0.132 0.054 B_Activated L2
ENSG00000162517 PEF1 96059 sc-eQTL 3.98e-01 -0.192 0.227 0.054 B_Activated L2
ENSG00000162520 SYNC -962641 sc-eQTL 9.02e-01 0.029 0.235 0.054 B_Activated L2
ENSG00000162521 RBBP4 -910187 sc-eQTL 6.52e-01 0.102 0.227 0.054 B_Activated L2
ENSG00000175130 MARCKSL1 -595278 sc-eQTL 5.35e-01 0.129 0.208 0.054 B_Activated L2
ENSG00000176261 ZBTB8OS -909948 sc-eQTL 5.36e-01 0.133 0.215 0.054 B_Activated L2
ENSG00000182866 LCK -510284 sc-eQTL 4.42e-01 0.12 0.156 0.054 B_Activated L2
ENSG00000184007 PTP4A2 -203901 sc-eQTL 8.84e-01 0.0242 0.165 0.054 B_Activated L2
ENSG00000025800 KPNA6 -367101 sc-eQTL 6.25e-01 0.109 0.222 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 444167 sc-eQTL 1.72e-01 -0.293 0.214 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -480973 sc-eQTL 6.58e-01 -0.0867 0.195 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -438720 sc-eQTL 9.16e-01 0.0208 0.197 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -551128 sc-eQTL 1.08e-01 -0.307 0.191 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 443973 sc-eQTL 1.62e-01 0.288 0.205 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -272913 sc-eQTL 2.21e-01 -0.23 0.187 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -331076 sc-eQTL 2.63e-02 0.455 0.203 0.05 CD8_TEM L2
ENSG00000134644 PUM1 674964 sc-eQTL 7.38e-01 0.0705 0.21 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -459431 sc-eQTL 5.14e-01 0.122 0.187 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -481404 sc-eQTL 8.60e-01 -0.037 0.21 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -653776 sc-eQTL 3.81e-01 -0.191 0.218 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 983181 sc-eQTL 1.29e-02 0.489 0.195 0.05 CD8_TEM L2
ENSG00000162517 PEF1 96059 sc-eQTL 9.71e-02 -0.308 0.185 0.05 CD8_TEM L2
ENSG00000162520 SYNC -962641 sc-eQTL 5.63e-01 -0.12 0.207 0.05 CD8_TEM L2
ENSG00000162521 RBBP4 -910187 sc-eQTL 9.80e-01 0.00474 0.186 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -595278 sc-eQTL 6.00e-01 -0.0876 0.167 0.05 CD8_TEM L2
ENSG00000176261 ZBTB8OS -909948 sc-eQTL 1.18e-01 0.298 0.19 0.05 CD8_TEM L2
ENSG00000182866 LCK -510284 sc-eQTL 1.34e-01 -0.155 0.103 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -203901 sc-eQTL 1.05e-02 -0.415 0.161 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -367101 sc-eQTL 5.57e-01 0.13 0.221 0.05 NK_HLA L2
ENSG00000060688 SNRNP40 444167 sc-eQTL 4.18e-01 0.185 0.228 0.05 NK_HLA L2
ENSG00000084623 EIF3I -480973 sc-eQTL 4.99e-02 -0.438 0.222 0.05 NK_HLA L2
ENSG00000084652 TXLNA -438720 sc-eQTL 3.27e-01 -0.204 0.207 0.05 NK_HLA L2
ENSG00000116478 HDAC1 -551128 sc-eQTL 3.88e-01 -0.173 0.2 0.05 NK_HLA L2
ENSG00000121753 ADGRB2 -23938 sc-eQTL 1.36e-01 0.27 0.18 0.05 NK_HLA L2
ENSG00000121766 ZCCHC17 443973 sc-eQTL 5.83e-01 -0.112 0.204 0.05 NK_HLA L2
ENSG00000121774 KHDRBS1 -272913 sc-eQTL 4.96e-02 0.367 0.186 0.05 NK_HLA L2
ENSG00000121775 TMEM39B -331076 sc-eQTL 7.58e-01 0.0696 0.225 0.05 NK_HLA L2
ENSG00000134644 PUM1 674964 sc-eQTL 6.18e-01 0.0991 0.199 0.05 NK_HLA L2
ENSG00000160050 CCDC28B -459431 sc-eQTL 2.31e-01 -0.23 0.191 0.05 NK_HLA L2
ENSG00000160055 TMEM234 -481404 sc-eQTL 8.88e-01 -0.0308 0.218 0.05 NK_HLA L2
ENSG00000160058 BSDC1 -653776 sc-eQTL 3.22e-01 -0.22 0.222 0.05 NK_HLA L2
ENSG00000162511 LAPTM5 983181 sc-eQTL 3.87e-01 0.164 0.189 0.05 NK_HLA L2
ENSG00000162517 PEF1 96059 sc-eQTL 2.39e-01 0.251 0.213 0.05 NK_HLA L2
ENSG00000162520 SYNC -962641 sc-eQTL 2.22e-01 -0.268 0.219 0.05 NK_HLA L2
ENSG00000162521 RBBP4 -910187 sc-eQTL 3.56e-01 0.199 0.215 0.05 NK_HLA L2
ENSG00000175130 MARCKSL1 -595278 sc-eQTL 1.39e-01 -0.245 0.165 0.05 NK_HLA L2
ENSG00000176261 ZBTB8OS -909948 sc-eQTL 3.69e-01 -0.202 0.224 0.05 NK_HLA L2
ENSG00000182866 LCK -510284 sc-eQTL 2.01e-03 0.465 0.148 0.05 NK_HLA L2
ENSG00000184007 PTP4A2 -203901 sc-eQTL 7.99e-01 -0.0436 0.171 0.05 NK_HLA L2
ENSG00000025800 KPNA6 -367101 sc-eQTL 3.05e-01 0.263 0.256 0.058 gdT L2
ENSG00000060688 SNRNP40 444167 sc-eQTL 8.97e-01 -0.0335 0.259 0.058 gdT L2
ENSG00000084623 EIF3I -480973 sc-eQTL 9.46e-01 -0.0167 0.247 0.058 gdT L2
ENSG00000084652 TXLNA -438720 sc-eQTL 6.78e-01 0.0927 0.223 0.058 gdT L2
ENSG00000116478 HDAC1 -551128 sc-eQTL 3.21e-01 -0.214 0.215 0.058 gdT L2
ENSG00000121766 ZCCHC17 443973 sc-eQTL 1.76e-01 -0.3 0.221 0.058 gdT L2
ENSG00000121774 KHDRBS1 -272913 sc-eQTL 7.67e-01 -0.0615 0.207 0.058 gdT L2
ENSG00000121775 TMEM39B -331076 sc-eQTL 3.94e-01 0.198 0.232 0.058 gdT L2
ENSG00000134644 PUM1 674964 sc-eQTL 9.86e-01 -0.00394 0.229 0.058 gdT L2
ENSG00000160050 CCDC28B -459431 sc-eQTL 1.13e-03 0.642 0.193 0.058 gdT L2
ENSG00000160055 TMEM234 -481404 sc-eQTL 1.42e-01 0.341 0.231 0.058 gdT L2
ENSG00000160058 BSDC1 -653776 sc-eQTL 6.43e-01 0.111 0.239 0.058 gdT L2
ENSG00000162511 LAPTM5 983181 sc-eQTL 8.39e-01 -0.0506 0.249 0.058 gdT L2
ENSG00000162517 PEF1 96059 sc-eQTL 1.29e-01 -0.345 0.226 0.058 gdT L2
ENSG00000162520 SYNC -962641 sc-eQTL 1.87e-01 0.306 0.231 0.058 gdT L2
ENSG00000162521 RBBP4 -910187 sc-eQTL 2.45e-02 0.498 0.219 0.058 gdT L2
ENSG00000175130 MARCKSL1 -595278 sc-eQTL 6.29e-01 -0.104 0.215 0.058 gdT L2
ENSG00000176261 ZBTB8OS -909948 sc-eQTL 8.44e-01 -0.0479 0.243 0.058 gdT L2
ENSG00000182866 LCK -510284 sc-eQTL 7.77e-01 0.0402 0.141 0.058 gdT L2
ENSG00000184007 PTP4A2 -203901 sc-eQTL 1.42e-01 -0.283 0.192 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 \N -23938 2.13e-05 2.61e-05 4.31e-06 1.34e-05 4.03e-06 1.13e-05 3.22e-05 3.8e-06 2.29e-05 1.16e-05 3.08e-05 1.19e-05 3.85e-05 1.06e-05 5.59e-06 1.33e-05 1.29e-05 1.92e-05 6.56e-06 5.35e-06 1.11e-05 2.37e-05 2.29e-05 6.97e-06 3.51e-05 6.09e-06 1.01e-05 9.19e-06 2.33e-05 1.99e-05 1.55e-05 1.61e-06 2.25e-06 6.04e-06 9.3e-06 4.54e-06 2.68e-06 2.9e-06 3.71e-06 2.82e-06 1.7e-06 3.15e-05 2.68e-06 3.66e-07 2.06e-06 3.13e-06 3.67e-06 1.5e-06 1.24e-06
ENSG00000162512 \N 832197 2.95e-07 1.59e-07 5.82e-08 2.26e-07 9.8e-08 8.45e-08 1.99e-07 5.75e-08 1.59e-07 7.6e-08 1.69e-07 1.19e-07 2.13e-07 8.13e-08 5.69e-08 7.89e-08 4.45e-08 1.56e-07 7.09e-08 5.35e-08 1.27e-07 1.39e-07 1.62e-07 3.07e-08 2.09e-07 1.26e-07 1.17e-07 1.12e-07 1.26e-07 1.06e-07 1.14e-07 3.66e-08 3.56e-08 9.78e-08 3.71e-08 2.74e-08 4.06e-08 8.51e-08 6.5e-08 5.35e-08 4.92e-08 1.63e-07 5.27e-08 7.32e-09 3.2e-08 1.55e-08 1.2e-07 1.95e-09 4.99e-08
ENSG00000228634 \N -192065 3.62e-06 4.7e-06 5.96e-07 2.39e-06 7.03e-07 8.5e-07 2.43e-06 8.98e-07 3.03e-06 1.48e-06 4.08e-06 1.84e-06 5.72e-06 1.37e-06 9.36e-07 1.99e-06 1.55e-06 2.12e-06 1.42e-06 1.2e-06 1.5e-06 3.42e-06 3.32e-06 1.68e-06 4.83e-06 1.15e-06 1.84e-06 1.5e-06 3.19e-06 2.95e-06 1.94e-06 4.55e-07 6.45e-07 1.45e-06 1.87e-06 8.93e-07 9.08e-07 3.79e-07 1.23e-06 3.46e-07 2.11e-07 4.84e-06 6.52e-07 1.81e-07 2.87e-07 3.52e-07 8.02e-07 2e-07 2.05e-07