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Genes within 1Mb (chr1:31739653:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -368403 sc-eQTL 5.50e-01 0.143 0.238 0.054 B_Activated L2
ENSG00000060688 SNRNP40 442865 sc-eQTL 4.89e-01 -0.162 0.234 0.054 B_Activated L2
ENSG00000084623 EIF3I -482275 sc-eQTL 8.64e-01 -0.0386 0.224 0.054 B_Activated L2
ENSG00000084652 TXLNA -440022 sc-eQTL 1.05e-01 0.363 0.223 0.054 B_Activated L2
ENSG00000116478 HDAC1 -552430 sc-eQTL 4.10e-01 -0.176 0.213 0.054 B_Activated L2
ENSG00000121766 ZCCHC17 442671 sc-eQTL 8.35e-02 -0.407 0.234 0.054 B_Activated L2
ENSG00000121774 KHDRBS1 -274215 sc-eQTL 2.36e-01 0.252 0.212 0.054 B_Activated L2
ENSG00000121775 TMEM39B -332378 sc-eQTL 8.37e-01 0.046 0.224 0.054 B_Activated L2
ENSG00000134644 PUM1 673662 sc-eQTL 4.59e-01 -0.162 0.219 0.054 B_Activated L2
ENSG00000160050 CCDC28B -460733 sc-eQTL 5.79e-02 0.379 0.198 0.054 B_Activated L2
ENSG00000160055 TMEM234 -482706 sc-eQTL 6.16e-01 0.111 0.22 0.054 B_Activated L2
ENSG00000160058 BSDC1 -655078 sc-eQTL 1.90e-01 -0.313 0.238 0.054 B_Activated L2
ENSG00000162511 LAPTM5 981879 sc-eQTL 5.72e-02 0.253 0.132 0.054 B_Activated L2
ENSG00000162517 PEF1 94757 sc-eQTL 3.98e-01 -0.192 0.227 0.054 B_Activated L2
ENSG00000162520 SYNC -963943 sc-eQTL 9.02e-01 0.029 0.235 0.054 B_Activated L2
ENSG00000162521 RBBP4 -911489 sc-eQTL 6.52e-01 0.102 0.227 0.054 B_Activated L2
ENSG00000175130 MARCKSL1 -596580 sc-eQTL 5.35e-01 0.129 0.208 0.054 B_Activated L2
ENSG00000176261 ZBTB8OS -911250 sc-eQTL 5.36e-01 0.133 0.215 0.054 B_Activated L2
ENSG00000182866 LCK -511586 sc-eQTL 4.42e-01 0.12 0.156 0.054 B_Activated L2
ENSG00000184007 PTP4A2 -205203 sc-eQTL 8.84e-01 0.0242 0.165 0.054 B_Activated L2
ENSG00000025800 KPNA6 -368403 sc-eQTL 6.25e-01 0.109 0.222 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 442865 sc-eQTL 1.72e-01 -0.293 0.214 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -482275 sc-eQTL 6.58e-01 -0.0867 0.195 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -440022 sc-eQTL 9.16e-01 0.0208 0.197 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -552430 sc-eQTL 1.08e-01 -0.307 0.191 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 442671 sc-eQTL 1.62e-01 0.288 0.205 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -274215 sc-eQTL 2.21e-01 -0.23 0.187 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -332378 sc-eQTL 2.63e-02 0.455 0.203 0.05 CD8_TEM L2
ENSG00000134644 PUM1 673662 sc-eQTL 7.38e-01 0.0705 0.21 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -460733 sc-eQTL 5.14e-01 0.122 0.187 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -482706 sc-eQTL 8.60e-01 -0.037 0.21 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -655078 sc-eQTL 3.81e-01 -0.191 0.218 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 981879 sc-eQTL 1.29e-02 0.489 0.195 0.05 CD8_TEM L2
ENSG00000162517 PEF1 94757 sc-eQTL 9.71e-02 -0.308 0.185 0.05 CD8_TEM L2
ENSG00000162520 SYNC -963943 sc-eQTL 5.63e-01 -0.12 0.207 0.05 CD8_TEM L2
ENSG00000162521 RBBP4 -911489 sc-eQTL 9.80e-01 0.00474 0.186 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -596580 sc-eQTL 6.00e-01 -0.0876 0.167 0.05 CD8_TEM L2
ENSG00000176261 ZBTB8OS -911250 sc-eQTL 1.18e-01 0.298 0.19 0.05 CD8_TEM L2
ENSG00000182866 LCK -511586 sc-eQTL 1.34e-01 -0.155 0.103 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -205203 sc-eQTL 1.05e-02 -0.415 0.161 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -368403 sc-eQTL 5.57e-01 0.13 0.221 0.05 NK_HLA L2
ENSG00000060688 SNRNP40 442865 sc-eQTL 4.18e-01 0.185 0.228 0.05 NK_HLA L2
ENSG00000084623 EIF3I -482275 sc-eQTL 4.99e-02 -0.438 0.222 0.05 NK_HLA L2
ENSG00000084652 TXLNA -440022 sc-eQTL 3.27e-01 -0.204 0.207 0.05 NK_HLA L2
ENSG00000116478 HDAC1 -552430 sc-eQTL 3.88e-01 -0.173 0.2 0.05 NK_HLA L2
ENSG00000121753 ADGRB2 -25240 sc-eQTL 1.36e-01 0.27 0.18 0.05 NK_HLA L2
ENSG00000121766 ZCCHC17 442671 sc-eQTL 5.83e-01 -0.112 0.204 0.05 NK_HLA L2
ENSG00000121774 KHDRBS1 -274215 sc-eQTL 4.96e-02 0.367 0.186 0.05 NK_HLA L2
ENSG00000121775 TMEM39B -332378 sc-eQTL 7.58e-01 0.0696 0.225 0.05 NK_HLA L2
ENSG00000134644 PUM1 673662 sc-eQTL 6.18e-01 0.0991 0.199 0.05 NK_HLA L2
ENSG00000160050 CCDC28B -460733 sc-eQTL 2.31e-01 -0.23 0.191 0.05 NK_HLA L2
ENSG00000160055 TMEM234 -482706 sc-eQTL 8.88e-01 -0.0308 0.218 0.05 NK_HLA L2
ENSG00000160058 BSDC1 -655078 sc-eQTL 3.22e-01 -0.22 0.222 0.05 NK_HLA L2
ENSG00000162511 LAPTM5 981879 sc-eQTL 3.87e-01 0.164 0.189 0.05 NK_HLA L2
ENSG00000162517 PEF1 94757 sc-eQTL 2.39e-01 0.251 0.213 0.05 NK_HLA L2
ENSG00000162520 SYNC -963943 sc-eQTL 2.22e-01 -0.268 0.219 0.05 NK_HLA L2
ENSG00000162521 RBBP4 -911489 sc-eQTL 3.56e-01 0.199 0.215 0.05 NK_HLA L2
ENSG00000175130 MARCKSL1 -596580 sc-eQTL 1.39e-01 -0.245 0.165 0.05 NK_HLA L2
ENSG00000176261 ZBTB8OS -911250 sc-eQTL 3.69e-01 -0.202 0.224 0.05 NK_HLA L2
ENSG00000182866 LCK -511586 sc-eQTL 2.01e-03 0.465 0.148 0.05 NK_HLA L2
ENSG00000184007 PTP4A2 -205203 sc-eQTL 7.99e-01 -0.0436 0.171 0.05 NK_HLA L2
ENSG00000025800 KPNA6 -368403 sc-eQTL 3.05e-01 0.263 0.256 0.058 gdT L2
ENSG00000060688 SNRNP40 442865 sc-eQTL 8.97e-01 -0.0335 0.259 0.058 gdT L2
ENSG00000084623 EIF3I -482275 sc-eQTL 9.46e-01 -0.0167 0.247 0.058 gdT L2
ENSG00000084652 TXLNA -440022 sc-eQTL 6.78e-01 0.0927 0.223 0.058 gdT L2
ENSG00000116478 HDAC1 -552430 sc-eQTL 3.21e-01 -0.214 0.215 0.058 gdT L2
ENSG00000121766 ZCCHC17 442671 sc-eQTL 1.76e-01 -0.3 0.221 0.058 gdT L2
ENSG00000121774 KHDRBS1 -274215 sc-eQTL 7.67e-01 -0.0615 0.207 0.058 gdT L2
ENSG00000121775 TMEM39B -332378 sc-eQTL 3.94e-01 0.198 0.232 0.058 gdT L2
ENSG00000134644 PUM1 673662 sc-eQTL 9.86e-01 -0.00394 0.229 0.058 gdT L2
ENSG00000160050 CCDC28B -460733 sc-eQTL 1.13e-03 0.642 0.193 0.058 gdT L2
ENSG00000160055 TMEM234 -482706 sc-eQTL 1.42e-01 0.341 0.231 0.058 gdT L2
ENSG00000160058 BSDC1 -655078 sc-eQTL 6.43e-01 0.111 0.239 0.058 gdT L2
ENSG00000162511 LAPTM5 981879 sc-eQTL 8.39e-01 -0.0506 0.249 0.058 gdT L2
ENSG00000162517 PEF1 94757 sc-eQTL 1.29e-01 -0.345 0.226 0.058 gdT L2
ENSG00000162520 SYNC -963943 sc-eQTL 1.87e-01 0.306 0.231 0.058 gdT L2
ENSG00000162521 RBBP4 -911489 sc-eQTL 2.45e-02 0.498 0.219 0.058 gdT L2
ENSG00000175130 MARCKSL1 -596580 sc-eQTL 6.29e-01 -0.104 0.215 0.058 gdT L2
ENSG00000176261 ZBTB8OS -911250 sc-eQTL 8.44e-01 -0.0479 0.243 0.058 gdT L2
ENSG00000182866 LCK -511586 sc-eQTL 7.77e-01 0.0402 0.141 0.058 gdT L2
ENSG00000184007 PTP4A2 -205203 sc-eQTL 1.42e-01 -0.283 0.192 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162512 SDC3 830895 eQTL 0.00079 -0.197 0.0584 0.0 0.0 0.0417
ENSG00000228634 AL136115.1 -193367 eQTL 0.023 0.188 0.0826 0.00173 0.0 0.0417
ENSG00000250135 AL049795.2 -431080 eQTL 0.0975 0.114 0.0689 0.00101 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 \N -25240 2.66e-05 3.08e-05 5.06e-06 1.42e-05 4e-06 1.19e-05 3.58e-05 3.8e-06 2.5e-05 1.25e-05 3.3e-05 1.33e-05 4.34e-05 1.17e-05 6.04e-06 1.48e-05 1.36e-05 2.01e-05 7.21e-06 5.32e-06 1.15e-05 2.55e-05 2.61e-05 7.43e-06 3.73e-05 6.05e-06 1.11e-05 1e-05 2.69e-05 2.13e-05 1.73e-05 1.67e-06 2.07e-06 5.81e-06 9.85e-06 4.81e-06 2.48e-06 2.97e-06 3.6e-06 2.79e-06 1.44e-06 3.49e-05 2.65e-06 3.05e-07 1.95e-06 3.29e-06 3.71e-06 1.52e-06 1.43e-06
ENSG00000162512 SDC3 830895 2.66e-07 1.01e-07 3.59e-08 1.78e-07 9.02e-08 9.32e-08 1.41e-07 5.49e-08 1.37e-07 4.24e-08 1.63e-07 8.03e-08 1.26e-07 6.21e-08 5.53e-08 7.89e-08 5.1e-08 1.1e-07 5.21e-08 3.89e-08 1.04e-07 1.3e-07 1.29e-07 4.67e-08 1.29e-07 1.13e-07 1.1e-07 8.71e-08 9.97e-08 1.1e-07 9.58e-08 3.96e-08 2.91e-08 8.82e-08 9.07e-08 3.94e-08 5.08e-08 9.49e-08 7.92e-08 3.05e-08 3.43e-08 1.36e-07 5.08e-08 1.23e-08 7.26e-08 1.7e-08 1.25e-07 1.88e-09 4.81e-08
ENSG00000228634 AL136115.1 -193367 2.23e-06 2.52e-06 7.65e-07 1.84e-06 5.12e-07 7.61e-07 1.8e-06 5.98e-07 1.7e-06 8.51e-07 2.02e-06 1.31e-06 3.51e-06 1.34e-06 1.05e-06 1.15e-06 1.01e-06 1.36e-06 1.53e-06 1.3e-06 9.23e-07 2.76e-06 1.78e-06 1e-06 3.3e-06 1.01e-06 1.38e-06 1.34e-06 1.77e-06 1.76e-06 1.81e-06 4.54e-07 5.29e-07 1.09e-06 1.65e-06 8.35e-07 9.08e-07 4.19e-07 8.03e-07 2.13e-07 2.82e-07 2.9e-06 4.55e-07 1.93e-07 3.27e-07 3.67e-07 8.94e-07 6.9e-07 3.21e-07