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Genes within 1Mb (chr1:31732822:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -375234 sc-eQTL 5.50e-01 0.143 0.238 0.054 B_Activated L2
ENSG00000060688 SNRNP40 436034 sc-eQTL 4.89e-01 -0.162 0.234 0.054 B_Activated L2
ENSG00000084623 EIF3I -489106 sc-eQTL 8.64e-01 -0.0386 0.224 0.054 B_Activated L2
ENSG00000084652 TXLNA -446853 sc-eQTL 1.05e-01 0.363 0.223 0.054 B_Activated L2
ENSG00000116478 HDAC1 -559261 sc-eQTL 4.10e-01 -0.176 0.213 0.054 B_Activated L2
ENSG00000121766 ZCCHC17 435840 sc-eQTL 8.35e-02 -0.407 0.234 0.054 B_Activated L2
ENSG00000121774 KHDRBS1 -281046 sc-eQTL 2.36e-01 0.252 0.212 0.054 B_Activated L2
ENSG00000121775 TMEM39B -339209 sc-eQTL 8.37e-01 0.046 0.224 0.054 B_Activated L2
ENSG00000134644 PUM1 666831 sc-eQTL 4.59e-01 -0.162 0.219 0.054 B_Activated L2
ENSG00000160050 CCDC28B -467564 sc-eQTL 5.79e-02 0.379 0.198 0.054 B_Activated L2
ENSG00000160055 TMEM234 -489537 sc-eQTL 6.16e-01 0.111 0.22 0.054 B_Activated L2
ENSG00000160058 BSDC1 -661909 sc-eQTL 1.90e-01 -0.313 0.238 0.054 B_Activated L2
ENSG00000162511 LAPTM5 975048 sc-eQTL 5.72e-02 0.253 0.132 0.054 B_Activated L2
ENSG00000162517 PEF1 87926 sc-eQTL 3.98e-01 -0.192 0.227 0.054 B_Activated L2
ENSG00000162520 SYNC -970774 sc-eQTL 9.02e-01 0.029 0.235 0.054 B_Activated L2
ENSG00000162521 RBBP4 -918320 sc-eQTL 6.52e-01 0.102 0.227 0.054 B_Activated L2
ENSG00000175130 MARCKSL1 -603411 sc-eQTL 5.35e-01 0.129 0.208 0.054 B_Activated L2
ENSG00000176261 ZBTB8OS -918081 sc-eQTL 5.36e-01 0.133 0.215 0.054 B_Activated L2
ENSG00000182866 LCK -518417 sc-eQTL 4.42e-01 0.12 0.156 0.054 B_Activated L2
ENSG00000184007 PTP4A2 -212034 sc-eQTL 8.84e-01 0.0242 0.165 0.054 B_Activated L2
ENSG00000025800 KPNA6 -375234 sc-eQTL 6.25e-01 0.109 0.222 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 436034 sc-eQTL 1.72e-01 -0.293 0.214 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -489106 sc-eQTL 6.58e-01 -0.0867 0.195 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -446853 sc-eQTL 9.16e-01 0.0208 0.197 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -559261 sc-eQTL 1.08e-01 -0.307 0.191 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 435840 sc-eQTL 1.62e-01 0.288 0.205 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -281046 sc-eQTL 2.21e-01 -0.23 0.187 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -339209 sc-eQTL 2.63e-02 0.455 0.203 0.05 CD8_TEM L2
ENSG00000134644 PUM1 666831 sc-eQTL 7.38e-01 0.0705 0.21 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -467564 sc-eQTL 5.14e-01 0.122 0.187 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -489537 sc-eQTL 8.60e-01 -0.037 0.21 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -661909 sc-eQTL 3.81e-01 -0.191 0.218 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 975048 sc-eQTL 1.29e-02 0.489 0.195 0.05 CD8_TEM L2
ENSG00000162517 PEF1 87926 sc-eQTL 9.71e-02 -0.308 0.185 0.05 CD8_TEM L2
ENSG00000162520 SYNC -970774 sc-eQTL 5.63e-01 -0.12 0.207 0.05 CD8_TEM L2
ENSG00000162521 RBBP4 -918320 sc-eQTL 9.80e-01 0.00474 0.186 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -603411 sc-eQTL 6.00e-01 -0.0876 0.167 0.05 CD8_TEM L2
ENSG00000176261 ZBTB8OS -918081 sc-eQTL 1.18e-01 0.298 0.19 0.05 CD8_TEM L2
ENSG00000182866 LCK -518417 sc-eQTL 1.34e-01 -0.155 0.103 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -212034 sc-eQTL 1.05e-02 -0.415 0.161 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -375234 sc-eQTL 5.57e-01 0.13 0.221 0.05 NK_HLA L2
ENSG00000060688 SNRNP40 436034 sc-eQTL 4.18e-01 0.185 0.228 0.05 NK_HLA L2
ENSG00000084623 EIF3I -489106 sc-eQTL 4.99e-02 -0.438 0.222 0.05 NK_HLA L2
ENSG00000084652 TXLNA -446853 sc-eQTL 3.27e-01 -0.204 0.207 0.05 NK_HLA L2
ENSG00000116478 HDAC1 -559261 sc-eQTL 3.88e-01 -0.173 0.2 0.05 NK_HLA L2
ENSG00000121753 ADGRB2 -32071 sc-eQTL 1.36e-01 0.27 0.18 0.05 NK_HLA L2
ENSG00000121766 ZCCHC17 435840 sc-eQTL 5.83e-01 -0.112 0.204 0.05 NK_HLA L2
ENSG00000121774 KHDRBS1 -281046 sc-eQTL 4.96e-02 0.367 0.186 0.05 NK_HLA L2
ENSG00000121775 TMEM39B -339209 sc-eQTL 7.58e-01 0.0696 0.225 0.05 NK_HLA L2
ENSG00000134644 PUM1 666831 sc-eQTL 6.18e-01 0.0991 0.199 0.05 NK_HLA L2
ENSG00000160050 CCDC28B -467564 sc-eQTL 2.31e-01 -0.23 0.191 0.05 NK_HLA L2
ENSG00000160055 TMEM234 -489537 sc-eQTL 8.88e-01 -0.0308 0.218 0.05 NK_HLA L2
ENSG00000160058 BSDC1 -661909 sc-eQTL 3.22e-01 -0.22 0.222 0.05 NK_HLA L2
ENSG00000162511 LAPTM5 975048 sc-eQTL 3.87e-01 0.164 0.189 0.05 NK_HLA L2
ENSG00000162517 PEF1 87926 sc-eQTL 2.39e-01 0.251 0.213 0.05 NK_HLA L2
ENSG00000162520 SYNC -970774 sc-eQTL 2.22e-01 -0.268 0.219 0.05 NK_HLA L2
ENSG00000162521 RBBP4 -918320 sc-eQTL 3.56e-01 0.199 0.215 0.05 NK_HLA L2
ENSG00000175130 MARCKSL1 -603411 sc-eQTL 1.39e-01 -0.245 0.165 0.05 NK_HLA L2
ENSG00000176261 ZBTB8OS -918081 sc-eQTL 3.69e-01 -0.202 0.224 0.05 NK_HLA L2
ENSG00000182866 LCK -518417 sc-eQTL 2.01e-03 0.465 0.148 0.05 NK_HLA L2
ENSG00000184007 PTP4A2 -212034 sc-eQTL 7.99e-01 -0.0436 0.171 0.05 NK_HLA L2
ENSG00000025800 KPNA6 -375234 sc-eQTL 3.05e-01 0.263 0.256 0.058 gdT L2
ENSG00000060688 SNRNP40 436034 sc-eQTL 8.97e-01 -0.0335 0.259 0.058 gdT L2
ENSG00000084623 EIF3I -489106 sc-eQTL 9.46e-01 -0.0167 0.247 0.058 gdT L2
ENSG00000084652 TXLNA -446853 sc-eQTL 6.78e-01 0.0927 0.223 0.058 gdT L2
ENSG00000116478 HDAC1 -559261 sc-eQTL 3.21e-01 -0.214 0.215 0.058 gdT L2
ENSG00000121766 ZCCHC17 435840 sc-eQTL 1.76e-01 -0.3 0.221 0.058 gdT L2
ENSG00000121774 KHDRBS1 -281046 sc-eQTL 7.67e-01 -0.0615 0.207 0.058 gdT L2
ENSG00000121775 TMEM39B -339209 sc-eQTL 3.94e-01 0.198 0.232 0.058 gdT L2
ENSG00000134644 PUM1 666831 sc-eQTL 9.86e-01 -0.00394 0.229 0.058 gdT L2
ENSG00000160050 CCDC28B -467564 sc-eQTL 1.13e-03 0.642 0.193 0.058 gdT L2
ENSG00000160055 TMEM234 -489537 sc-eQTL 1.42e-01 0.341 0.231 0.058 gdT L2
ENSG00000160058 BSDC1 -661909 sc-eQTL 6.43e-01 0.111 0.239 0.058 gdT L2
ENSG00000162511 LAPTM5 975048 sc-eQTL 8.39e-01 -0.0506 0.249 0.058 gdT L2
ENSG00000162517 PEF1 87926 sc-eQTL 1.29e-01 -0.345 0.226 0.058 gdT L2
ENSG00000162520 SYNC -970774 sc-eQTL 1.87e-01 0.306 0.231 0.058 gdT L2
ENSG00000162521 RBBP4 -918320 sc-eQTL 2.45e-02 0.498 0.219 0.058 gdT L2
ENSG00000175130 MARCKSL1 -603411 sc-eQTL 6.29e-01 -0.104 0.215 0.058 gdT L2
ENSG00000176261 ZBTB8OS -918081 sc-eQTL 8.44e-01 -0.0479 0.243 0.058 gdT L2
ENSG00000182866 LCK -518417 sc-eQTL 7.77e-01 0.0402 0.141 0.058 gdT L2
ENSG00000184007 PTP4A2 -212034 sc-eQTL 1.42e-01 -0.283 0.192 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162512 SDC3 824064 eQTL 0.000717 -0.199 0.0587 0.0 0.0 0.0417
ENSG00000228634 AL136115.1 -200198 eQTL 0.0261 0.185 0.083 0.00164 0.0 0.0417
ENSG00000250135 AL049795.2 -437911 eQTL 0.094 0.116 0.0693 0.00103 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 \N -32071 1.03e-05 1.26e-05 2.46e-06 7.79e-06 2.38e-06 6.12e-06 1.57e-05 2.15e-06 1.18e-05 6.3e-06 1.64e-05 6.68e-06 2.33e-05 4.49e-06 3.64e-06 7.65e-06 7.02e-06 1e-05 4.21e-06 3.39e-06 6.46e-06 1.18e-05 1.11e-05 4.71e-06 2.27e-05 4.48e-06 6.69e-06 5.32e-06 1.46e-05 1.64e-05 8.5e-06 9.65e-07 1.49e-06 4.01e-06 5.89e-06 3.76e-06 1.7e-06 2.37e-06 2.46e-06 2.1e-06 1.11e-06 1.6e-05 1.61e-06 3.05e-07 9.15e-07 1.95e-06 1.91e-06 8.29e-07 6.66e-07
ENSG00000162512 SDC3 824064 2.74e-07 1.35e-07 4.98e-08 1.97e-07 1.01e-07 9.48e-08 1.61e-07 5.43e-08 1.45e-07 5.42e-08 1.52e-07 9e-08 1.53e-07 7.13e-08 5.91e-08 7.49e-08 4.17e-08 1.33e-07 6.92e-08 4.31e-08 1.26e-07 1.24e-07 1.45e-07 2.79e-08 1.63e-07 1.21e-07 1.07e-07 9.74e-08 1.2e-07 1e-07 1.02e-07 3.26e-08 3.73e-08 8.11e-08 6.34e-08 3.05e-08 5.8e-08 8.71e-08 6.71e-08 3.75e-08 4.69e-08 1.46e-07 5.27e-08 1.43e-08 3.4e-08 1.86e-08 1.19e-07 3.78e-09 4.81e-08
ENSG00000228634 AL136115.1 -200198 1.86e-06 2.67e-06 2.31e-07 1.58e-06 4.65e-07 8e-07 1.33e-06 4.22e-07 1.77e-06 7.42e-07 1.93e-06 1.46e-06 3.36e-06 9.7e-07 3.68e-07 1.24e-06 1.04e-06 1.55e-06 7.85e-07 7.92e-07 7.78e-07 2.18e-06 1.79e-06 9.38e-07 3.3e-06 9.68e-07 1.1e-06 1.29e-06 1.73e-06 1.86e-06 1.07e-06 2.66e-07 4.3e-07 8.83e-07 9.09e-07 8.6e-07 7.77e-07 3.94e-07 6.93e-07 3.47e-07 3.3e-07 3.16e-06 3.9e-07 1.81e-07 3.91e-07 3.44e-07 3.98e-07 2.52e-07 2.4e-07