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Genes within 1Mb (chr1:31708553:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -399503 sc-eQTL 2.61e-01 -0.23 0.203 0.054 pDC L2
ENSG00000060688 SNRNP40 411765 sc-eQTL 1.99e-01 0.27 0.209 0.054 pDC L2
ENSG00000084623 EIF3I -513375 sc-eQTL 3.84e-01 0.171 0.196 0.054 pDC L2
ENSG00000084652 TXLNA -471122 sc-eQTL 9.85e-01 -0.00391 0.201 0.054 pDC L2
ENSG00000116478 HDAC1 -583530 sc-eQTL 8.58e-01 0.0371 0.207 0.054 pDC L2
ENSG00000121766 ZCCHC17 411571 sc-eQTL 4.03e-01 -0.193 0.23 0.054 pDC L2
ENSG00000121774 KHDRBS1 -305315 sc-eQTL 6.02e-01 0.0943 0.18 0.054 pDC L2
ENSG00000121775 TMEM39B -363478 sc-eQTL 3.32e-01 -0.187 0.192 0.054 pDC L2
ENSG00000134644 PUM1 642562 sc-eQTL 8.97e-02 -0.323 0.189 0.054 pDC L2
ENSG00000160050 CCDC28B -491833 sc-eQTL 3.65e-01 0.175 0.192 0.054 pDC L2
ENSG00000160055 TMEM234 -513806 sc-eQTL 9.57e-01 0.012 0.222 0.054 pDC L2
ENSG00000160058 BSDC1 -686178 sc-eQTL 9.07e-01 -0.0248 0.213 0.054 pDC L2
ENSG00000160062 ZBTB8A -830874 sc-eQTL 9.57e-01 0.0102 0.189 0.054 pDC L2
ENSG00000162511 LAPTM5 950779 sc-eQTL 6.82e-01 -0.073 0.178 0.054 pDC L2
ENSG00000162517 PEF1 63657 sc-eQTL 9.27e-01 0.0211 0.231 0.054 pDC L2
ENSG00000162520 SYNC -995043 sc-eQTL 8.44e-01 0.0393 0.2 0.054 pDC L2
ENSG00000162521 RBBP4 -942589 sc-eQTL 2.76e-02 0.318 0.143 0.054 pDC L2
ENSG00000168528 SERINC2 298988 sc-eQTL 8.38e-01 -0.0441 0.216 0.054 pDC L2
ENSG00000175130 MARCKSL1 -627680 sc-eQTL 8.16e-02 0.229 0.131 0.054 pDC L2
ENSG00000176261 ZBTB8OS -942350 sc-eQTL 7.95e-01 -0.0554 0.212 0.054 pDC L2
ENSG00000182866 LCK -542686 sc-eQTL 1.56e-01 -0.232 0.163 0.054 pDC L2
ENSG00000184007 PTP4A2 -236303 sc-eQTL 3.56e-01 -0.159 0.172 0.054 pDC L2
ENSG00000225828 FAM229A -655725 sc-eQTL 8.38e-01 0.043 0.21 0.054 pDC L2
ENSG00000284543 LINC01226 202327 sc-eQTL 6.72e-01 0.071 0.167 0.054 pDC L2
ENSG00000287510 AL137857.1 976860 sc-eQTL 6.06e-01 0.102 0.197 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121766 ZCCHC17 411571 eQTL 2.29e-02 -0.103 0.0453 0.0 0.0 0.0393
ENSG00000121775 TMEM39B -363478 eQTL 8.91e-03 0.135 0.0517 0.0 0.0 0.0393
ENSG00000176261 ZBTB8OS -942350 eQTL 1.48e-02 0.0792 0.0324 0.0 0.0 0.0393
ENSG00000220785 MTMR9LP -533067 eQTL 0.00122 -0.328 0.101 0.0 0.0 0.0393
ENSG00000225828 FAM229A -655725 eQTL 0.0431 -0.0912 0.045 0.00134 0.0 0.0393

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 \N -56340 1.03e-05 1.38e-05 2.48e-06 9.4e-06 2.4e-06 5.6e-06 1.68e-05 2.27e-06 1.28e-05 6.68e-06 1.66e-05 6.84e-06 2.21e-05 5.19e-06 4.33e-06 8.95e-06 5.99e-06 9.99e-06 3.62e-06 3.29e-06 6.54e-06 1.19e-05 1.24e-05 4.28e-06 2.26e-05 4.45e-06 7.46e-06 6.17e-06 1.41e-05 1.02e-05 7.68e-06 9.64e-07 1.24e-06 3.74e-06 6.13e-06 3.37e-06 1.76e-06 2.11e-06 1.96e-06 1.96e-06 9.34e-07 1.71e-05 1.57e-06 2.36e-07 9.22e-07 2.36e-06 2.15e-06 8.94e-07 5.93e-07
ENSG00000224066 \N -498261 3.53e-07 2.88e-07 1.02e-07 3.87e-07 1.05e-07 1.32e-07 4.14e-07 7.79e-08 2.76e-07 1.39e-07 2.84e-07 1.91e-07 5.39e-07 9.15e-08 1.07e-07 1.61e-07 8.53e-08 2.83e-07 1.81e-07 1.71e-07 1.68e-07 2.3e-07 2.63e-07 1.06e-07 4.67e-07 2.13e-07 1.97e-07 2.18e-07 2.03e-07 2.75e-07 1.71e-07 5.99e-08 5.73e-08 1.37e-07 2.55e-07 8.32e-08 1.45e-07 7.75e-08 4.04e-08 2.53e-08 8.15e-08 3.55e-07 2.62e-08 3.4e-08 5.84e-08 1.35e-08 9.98e-08 1.15e-08 4.68e-08
ENSG00000237329 \N 671819 2.74e-07 1.42e-07 6.45e-08 2.35e-07 1.03e-07 8.21e-08 2.1e-07 5.85e-08 1.54e-07 6.4e-08 1.73e-07 1.08e-07 2.24e-07 8.13e-08 5.82e-08 8.08e-08 4.18e-08 1.51e-07 7.36e-08 7.83e-08 1.18e-07 1.31e-07 1.58e-07 3.58e-08 2.02e-07 1.31e-07 1.2e-07 1.17e-07 1.31e-07 1.06e-07 1.07e-07 4.85e-08 3.46e-08 9.5e-08 3.97e-08 3.43e-08 6.77e-08 6.98e-08 6.21e-08 6.92e-08 4.58e-08 1.55e-07 4.87e-08 1.53e-08 3.41e-08 1.19e-08 8.98e-08 2.2e-09 4.99e-08