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Genes within 1Mb (chr1:31693004:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -415052 sc-eQTL 8.05e-01 -0.0521 0.211 0.05 CD4_CTL L2
ENSG00000060688 SNRNP40 396216 sc-eQTL 7.72e-01 0.0574 0.198 0.05 CD4_CTL L2
ENSG00000084623 EIF3I -528924 sc-eQTL 2.99e-01 0.186 0.179 0.05 CD4_CTL L2
ENSG00000084652 TXLNA -486671 sc-eQTL 6.15e-01 -0.0958 0.19 0.05 CD4_CTL L2
ENSG00000116478 HDAC1 -599079 sc-eQTL 3.34e-01 -0.18 0.186 0.05 CD4_CTL L2
ENSG00000121766 ZCCHC17 396022 sc-eQTL 8.81e-01 0.0292 0.195 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 -320864 sc-eQTL 9.59e-01 -0.00828 0.163 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B -379027 sc-eQTL 7.29e-01 0.0696 0.201 0.05 CD4_CTL L2
ENSG00000134644 PUM1 627013 sc-eQTL 1.88e-01 0.251 0.19 0.05 CD4_CTL L2
ENSG00000160050 CCDC28B -507382 sc-eQTL 4.95e-01 0.13 0.19 0.05 CD4_CTL L2
ENSG00000160055 TMEM234 -529355 sc-eQTL 2.74e-01 0.224 0.204 0.05 CD4_CTL L2
ENSG00000160058 BSDC1 -701727 sc-eQTL 9.40e-02 -0.328 0.195 0.05 CD4_CTL L2
ENSG00000162511 LAPTM5 935230 sc-eQTL 4.16e-01 -0.139 0.17 0.05 CD4_CTL L2
ENSG00000162517 PEF1 48108 sc-eQTL 1.48e-01 -0.252 0.174 0.05 CD4_CTL L2
ENSG00000162521 RBBP4 -958138 sc-eQTL 7.31e-01 -0.0627 0.182 0.05 CD4_CTL L2
ENSG00000175130 MARCKSL1 -643229 sc-eQTL 6.93e-01 -0.0759 0.192 0.05 CD4_CTL L2
ENSG00000176261 ZBTB8OS -957899 sc-eQTL 6.40e-01 -0.0915 0.195 0.05 CD4_CTL L2
ENSG00000182866 LCK -558235 sc-eQTL 9.48e-01 -0.00878 0.135 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 -251852 sc-eQTL 8.04e-01 0.0269 0.108 0.05 CD4_CTL L2
ENSG00000186056 MATN1-AS1 974500 sc-eQTL 6.33e-02 0.345 0.185 0.05 CD4_CTL L2
ENSG00000225828 FAM229A -671274 sc-eQTL 8.79e-01 -0.0274 0.179 0.05 CD4_CTL L2
ENSG00000287510 AL137857.1 961311 sc-eQTL 1.33e-01 0.247 0.163 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 -415052 sc-eQTL 8.32e-01 0.0413 0.194 0.051 CD8_TCM L2
ENSG00000060688 SNRNP40 396216 sc-eQTL 3.96e-01 -0.183 0.215 0.051 CD8_TCM L2
ENSG00000084623 EIF3I -528924 sc-eQTL 3.72e-01 -0.181 0.203 0.051 CD8_TCM L2
ENSG00000084652 TXLNA -486671 sc-eQTL 7.87e-01 -0.0509 0.189 0.051 CD8_TCM L2
ENSG00000116478 HDAC1 -599079 sc-eQTL 6.06e-01 -0.0844 0.163 0.051 CD8_TCM L2
ENSG00000121766 ZCCHC17 396022 sc-eQTL 5.73e-01 -0.111 0.197 0.051 CD8_TCM L2
ENSG00000121774 KHDRBS1 -320864 sc-eQTL 6.19e-01 0.0778 0.156 0.051 CD8_TCM L2
ENSG00000121775 TMEM39B -379027 sc-eQTL 9.81e-01 0.00461 0.191 0.051 CD8_TCM L2
ENSG00000134644 PUM1 627013 sc-eQTL 6.54e-01 0.0831 0.185 0.051 CD8_TCM L2
ENSG00000160050 CCDC28B -507382 sc-eQTL 6.54e-01 0.0843 0.188 0.051 CD8_TCM L2
ENSG00000160055 TMEM234 -529355 sc-eQTL 8.28e-01 0.0432 0.199 0.051 CD8_TCM L2
ENSG00000160058 BSDC1 -701727 sc-eQTL 2.48e-01 0.212 0.183 0.051 CD8_TCM L2
ENSG00000162511 LAPTM5 935230 sc-eQTL 6.16e-01 0.0975 0.194 0.051 CD8_TCM L2
ENSG00000162517 PEF1 48108 sc-eQTL 8.46e-02 -0.341 0.197 0.051 CD8_TCM L2
ENSG00000162521 RBBP4 -958138 sc-eQTL 5.00e-01 -0.12 0.177 0.051 CD8_TCM L2
ENSG00000175130 MARCKSL1 -643229 sc-eQTL 3.20e-01 0.166 0.167 0.051 CD8_TCM L2
ENSG00000176261 ZBTB8OS -957899 sc-eQTL 3.51e-01 -0.183 0.196 0.051 CD8_TCM L2
ENSG00000182866 LCK -558235 sc-eQTL 6.06e-01 -0.0566 0.109 0.051 CD8_TCM L2
ENSG00000184007 PTP4A2 -251852 sc-eQTL 4.16e-01 0.13 0.159 0.051 CD8_TCM L2
ENSG00000186056 MATN1-AS1 974500 sc-eQTL 6.87e-01 -0.0726 0.18 0.051 CD8_TCM L2
ENSG00000287510 AL137857.1 961311 sc-eQTL 5.25e-01 0.115 0.181 0.051 CD8_TCM L2
ENSG00000025800 KPNA6 -415052 sc-eQTL 2.03e-01 -0.264 0.207 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 396216 sc-eQTL 4.39e-01 0.156 0.201 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -528924 sc-eQTL 5.04e-01 -0.123 0.183 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -486671 sc-eQTL 3.33e-01 -0.179 0.184 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -599079 sc-eQTL 6.48e-01 -0.0824 0.18 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 396022 sc-eQTL 6.87e-01 -0.0779 0.193 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -320864 sc-eQTL 5.90e-01 -0.0953 0.176 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -379027 sc-eQTL 8.12e-01 -0.046 0.193 0.05 CD8_TEM L2
ENSG00000134644 PUM1 627013 sc-eQTL 2.23e-01 -0.24 0.197 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -507382 sc-eQTL 6.39e-01 0.0825 0.175 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -529355 sc-eQTL 4.51e-01 -0.149 0.197 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -701727 sc-eQTL 9.70e-01 0.00763 0.205 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 935230 sc-eQTL 2.44e-01 -0.216 0.185 0.05 CD8_TEM L2
ENSG00000162517 PEF1 48108 sc-eQTL 8.25e-01 0.0387 0.175 0.05 CD8_TEM L2
ENSG00000162521 RBBP4 -958138 sc-eQTL 9.23e-01 -0.0169 0.175 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -643229 sc-eQTL 1.60e-01 0.22 0.156 0.05 CD8_TEM L2
ENSG00000176261 ZBTB8OS -957899 sc-eQTL 2.00e-01 -0.23 0.179 0.05 CD8_TEM L2
ENSG00000182866 LCK -558235 sc-eQTL 4.41e-01 0.0749 0.0969 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -251852 sc-eQTL 3.68e-01 0.138 0.153 0.05 CD8_TEM L2
ENSG00000186056 MATN1-AS1 974500 sc-eQTL 2.67e-01 0.214 0.192 0.05 CD8_TEM L2
ENSG00000287510 AL137857.1 961311 sc-eQTL 8.64e-01 0.0299 0.174 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -415052 sc-eQTL 3.29e-01 -0.238 0.243 0.056 PB L2
ENSG00000060688 SNRNP40 396216 sc-eQTL 3.77e-01 0.196 0.221 0.056 PB L2
ENSG00000084623 EIF3I -528924 sc-eQTL 3.97e-01 0.122 0.143 0.056 PB L2
ENSG00000084652 TXLNA -486671 sc-eQTL 8.72e-02 0.324 0.188 0.056 PB L2
ENSG00000116478 HDAC1 -599079 sc-eQTL 9.45e-01 0.0152 0.221 0.056 PB L2
ENSG00000121766 ZCCHC17 396022 sc-eQTL 4.32e-01 -0.202 0.257 0.056 PB L2
ENSG00000121774 KHDRBS1 -320864 sc-eQTL 4.99e-01 0.134 0.198 0.056 PB L2
ENSG00000121775 TMEM39B -379027 sc-eQTL 7.00e-01 0.0882 0.229 0.056 PB L2
ENSG00000134644 PUM1 627013 sc-eQTL 4.28e-01 -0.177 0.223 0.056 PB L2
ENSG00000160050 CCDC28B -507382 sc-eQTL 6.38e-01 0.102 0.217 0.056 PB L2
ENSG00000160055 TMEM234 -529355 sc-eQTL 3.72e-01 -0.224 0.25 0.056 PB L2
ENSG00000160058 BSDC1 -701727 sc-eQTL 9.32e-01 0.0232 0.274 0.056 PB L2
ENSG00000162510 MATN1 969419 sc-eQTL 6.18e-01 0.104 0.208 0.056 PB L2
ENSG00000162511 LAPTM5 935230 sc-eQTL 1.17e-01 -0.233 0.147 0.056 PB L2
ENSG00000162517 PEF1 48108 sc-eQTL 1.67e-01 0.317 0.227 0.056 PB L2
ENSG00000162521 RBBP4 -958138 sc-eQTL 6.98e-01 -0.0678 0.174 0.056 PB L2
ENSG00000175130 MARCKSL1 -643229 sc-eQTL 1.02e-01 0.294 0.178 0.056 PB L2
ENSG00000176261 ZBTB8OS -957899 sc-eQTL 2.03e-01 0.185 0.144 0.056 PB L2
ENSG00000182866 LCK -558235 sc-eQTL 8.22e-01 0.0513 0.227 0.056 PB L2
ENSG00000184007 PTP4A2 -251852 sc-eQTL 2.52e-02 -0.345 0.152 0.056 PB L2
ENSG00000186056 MATN1-AS1 974500 sc-eQTL 5.27e-01 0.129 0.203 0.056 PB L2
ENSG00000287510 AL137857.1 961311 sc-eQTL 4.69e-01 -0.157 0.216 0.056 PB L2
ENSG00000025800 KPNA6 -415052 sc-eQTL 8.36e-01 0.0526 0.254 0.055 gdT L2
ENSG00000060688 SNRNP40 396216 sc-eQTL 8.22e-01 -0.0577 0.256 0.055 gdT L2
ENSG00000084623 EIF3I -528924 sc-eQTL 1.12e-01 -0.389 0.243 0.055 gdT L2
ENSG00000084652 TXLNA -486671 sc-eQTL 9.57e-01 0.012 0.221 0.055 gdT L2
ENSG00000116478 HDAC1 -599079 sc-eQTL 8.15e-01 0.0502 0.214 0.055 gdT L2
ENSG00000121766 ZCCHC17 396022 sc-eQTL 6.84e-01 0.0896 0.22 0.055 gdT L2
ENSG00000121774 KHDRBS1 -320864 sc-eQTL 4.24e-02 0.415 0.203 0.055 gdT L2
ENSG00000121775 TMEM39B -379027 sc-eQTL 4.92e-01 -0.159 0.23 0.055 gdT L2
ENSG00000134644 PUM1 627013 sc-eQTL 8.21e-01 -0.0513 0.227 0.055 gdT L2
ENSG00000160050 CCDC28B -507382 sc-eQTL 1.34e-01 0.297 0.197 0.055 gdT L2
ENSG00000160055 TMEM234 -529355 sc-eQTL 1.75e-01 -0.313 0.229 0.055 gdT L2
ENSG00000160058 BSDC1 -701727 sc-eQTL 3.74e-01 -0.211 0.236 0.055 gdT L2
ENSG00000162511 LAPTM5 935230 sc-eQTL 9.42e-01 0.0181 0.247 0.055 gdT L2
ENSG00000162517 PEF1 48108 sc-eQTL 7.39e-01 -0.0754 0.226 0.055 gdT L2
ENSG00000162521 RBBP4 -958138 sc-eQTL 5.13e-01 0.145 0.221 0.055 gdT L2
ENSG00000175130 MARCKSL1 -643229 sc-eQTL 8.32e-01 0.0453 0.214 0.055 gdT L2
ENSG00000176261 ZBTB8OS -957899 sc-eQTL 8.69e-01 -0.0398 0.241 0.055 gdT L2
ENSG00000182866 LCK -558235 sc-eQTL 9.56e-01 0.00782 0.14 0.055 gdT L2
ENSG00000184007 PTP4A2 -251852 sc-eQTL 5.94e-01 0.102 0.192 0.055 gdT L2
ENSG00000186056 MATN1-AS1 974500 sc-eQTL 9.38e-01 -0.0178 0.228 0.055 gdT L2
ENSG00000287510 AL137857.1 961311 sc-eQTL 7.87e-02 -0.386 0.218 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000184007 PTP4A2 -251852 eQTL 0.0288 -0.0734 0.0335 0.00103 0.0 0.0314
ENSG00000269967 AL136115.2 -228837 eQTL 0.0569 -0.142 0.0743 0.00127 0.0 0.0314

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000182866 \N -558235 3.14e-07 1.53e-07 5.91e-08 2.24e-07 1.03e-07 8.75e-08 2.1e-07 5.85e-08 1.5e-07 7.6e-08 1.62e-07 1.2e-07 2.05e-07 8.07e-08 5.69e-08 7.97e-08 4.31e-08 1.64e-07 7.39e-08 5.75e-08 1.27e-07 1.39e-07 1.62e-07 3.42e-08 1.85e-07 1.22e-07 1.17e-07 1.12e-07 1.31e-07 1.1e-07 1.07e-07 4.69e-08 4.37e-08 9.52e-08 5.16e-08 2.68e-08 6.24e-08 7.49e-08 6.45e-08 6.31e-08 5.04e-08 1.52e-07 3.18e-08 1.14e-08 3.36e-08 1.01e-08 8.67e-08 2.2e-09 4.81e-08
ENSG00000220785 \N -548616 3.1e-07 1.51e-07 6.26e-08 2.31e-07 9.82e-08 7.75e-08 2.16e-07 5.62e-08 1.5e-07 8.53e-08 1.63e-07 1.22e-07 2.13e-07 8.15e-08 5.62e-08 7.97e-08 4.45e-08 1.72e-07 7.29e-08 6.16e-08 1.22e-07 1.42e-07 1.58e-07 3.59e-08 1.85e-07 1.23e-07 1.17e-07 1.1e-07 1.32e-07 1.24e-07 1.06e-07 4.85e-08 4.23e-08 9.76e-08 5.65e-08 2.74e-08 5.67e-08 7.51e-08 5.84e-08 6.55e-08 4.36e-08 1.59e-07 3.53e-08 1.54e-08 3.87e-08 8.31e-09 7.92e-08 2.23e-09 4.82e-08