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Genes within 1Mb (chr1:31684159:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -423897 sc-eQTL 1.47e-01 -0.327 0.224 0.05 CD4_CTL L2
ENSG00000060688 SNRNP40 387371 sc-eQTL 3.02e-01 0.218 0.211 0.05 CD4_CTL L2
ENSG00000084623 EIF3I -537769 sc-eQTL 3.51e-01 -0.178 0.191 0.05 CD4_CTL L2
ENSG00000084652 TXLNA -495516 sc-eQTL 4.03e-01 -0.17 0.203 0.05 CD4_CTL L2
ENSG00000116478 HDAC1 -607924 sc-eQTL 5.23e-01 -0.127 0.198 0.05 CD4_CTL L2
ENSG00000121766 ZCCHC17 387177 sc-eQTL 9.02e-01 0.0256 0.208 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 -329709 sc-eQTL 6.88e-01 -0.0698 0.174 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B -387872 sc-eQTL 5.34e-01 0.134 0.214 0.05 CD4_CTL L2
ENSG00000134644 PUM1 618168 sc-eQTL 2.78e-01 0.221 0.203 0.05 CD4_CTL L2
ENSG00000160050 CCDC28B -516227 sc-eQTL 6.72e-01 0.0859 0.203 0.05 CD4_CTL L2
ENSG00000160055 TMEM234 -538200 sc-eQTL 2.46e-01 -0.254 0.218 0.05 CD4_CTL L2
ENSG00000160058 BSDC1 -710572 sc-eQTL 7.63e-01 0.0634 0.21 0.05 CD4_CTL L2
ENSG00000162511 LAPTM5 926385 sc-eQTL 1.85e-01 0.241 0.181 0.05 CD4_CTL L2
ENSG00000162517 PEF1 39263 sc-eQTL 8.67e-01 -0.0313 0.186 0.05 CD4_CTL L2
ENSG00000162521 RBBP4 -966983 sc-eQTL 4.91e-01 0.134 0.194 0.05 CD4_CTL L2
ENSG00000175130 MARCKSL1 -652074 sc-eQTL 8.09e-01 -0.0496 0.205 0.05 CD4_CTL L2
ENSG00000176261 ZBTB8OS -966744 sc-eQTL 8.30e-01 -0.0449 0.208 0.05 CD4_CTL L2
ENSG00000182866 LCK -567080 sc-eQTL 6.22e-01 0.071 0.144 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 -260697 sc-eQTL 7.19e-01 -0.0417 0.116 0.05 CD4_CTL L2
ENSG00000186056 MATN1-AS1 965655 sc-eQTL 1.88e-01 0.262 0.198 0.05 CD4_CTL L2
ENSG00000225828 FAM229A -680119 sc-eQTL 6.34e-01 -0.091 0.191 0.05 CD4_CTL L2
ENSG00000287510 AL137857.1 952466 sc-eQTL 1.87e-02 0.41 0.173 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 -423897 sc-eQTL 4.08e-01 -0.183 0.22 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 387371 sc-eQTL 8.97e-01 -0.0278 0.214 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -537769 sc-eQTL 3.12e-01 0.197 0.194 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -495516 sc-eQTL 1.30e-01 -0.296 0.195 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -607924 sc-eQTL 3.62e-01 0.174 0.191 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 387177 sc-eQTL 1.85e-02 0.479 0.202 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -329709 sc-eQTL 5.25e-01 0.119 0.187 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -387872 sc-eQTL 6.14e-02 0.382 0.203 0.05 CD8_TEM L2
ENSG00000134644 PUM1 618168 sc-eQTL 3.45e-01 0.198 0.209 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -516227 sc-eQTL 1.55e-01 0.265 0.185 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -538200 sc-eQTL 8.12e-01 -0.0497 0.209 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -710572 sc-eQTL 8.22e-01 -0.0488 0.217 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 926385 sc-eQTL 7.13e-01 -0.0725 0.197 0.05 CD8_TEM L2
ENSG00000162517 PEF1 39263 sc-eQTL 6.73e-01 0.0783 0.185 0.05 CD8_TEM L2
ENSG00000162521 RBBP4 -966983 sc-eQTL 9.77e-01 -0.00535 0.185 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -652074 sc-eQTL 4.27e-01 0.132 0.166 0.05 CD8_TEM L2
ENSG00000176261 ZBTB8OS -966744 sc-eQTL 4.32e-01 -0.15 0.19 0.05 CD8_TEM L2
ENSG00000182866 LCK -567080 sc-eQTL 7.15e-01 0.0376 0.103 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -260697 sc-eQTL 5.32e-01 -0.102 0.163 0.05 CD8_TEM L2
ENSG00000186056 MATN1-AS1 965655 sc-eQTL 1.16e-01 -0.32 0.203 0.05 CD8_TEM L2
ENSG00000287510 AL137857.1 952466 sc-eQTL 9.23e-02 0.311 0.184 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -423897 sc-eQTL 6.53e-02 -0.476 0.255 0.056 PB L2
ENSG00000060688 SNRNP40 387371 sc-eQTL 7.27e-01 0.0826 0.236 0.056 PB L2
ENSG00000084623 EIF3I -537769 sc-eQTL 7.44e-01 0.05 0.153 0.056 PB L2
ENSG00000084652 TXLNA -495516 sc-eQTL 6.68e-02 0.37 0.2 0.056 PB L2
ENSG00000116478 HDAC1 -607924 sc-eQTL 5.09e-01 -0.155 0.235 0.056 PB L2
ENSG00000121766 ZCCHC17 387177 sc-eQTL 8.03e-01 -0.0684 0.274 0.056 PB L2
ENSG00000121774 KHDRBS1 -329709 sc-eQTL 9.30e-02 0.354 0.209 0.056 PB L2
ENSG00000121775 TMEM39B -387872 sc-eQTL 3.35e-01 -0.235 0.242 0.056 PB L2
ENSG00000134644 PUM1 618168 sc-eQTL 3.16e-01 0.238 0.237 0.056 PB L2
ENSG00000160050 CCDC28B -516227 sc-eQTL 1.14e-01 -0.364 0.229 0.056 PB L2
ENSG00000160055 TMEM234 -538200 sc-eQTL 5.86e-01 0.146 0.266 0.056 PB L2
ENSG00000160058 BSDC1 -710572 sc-eQTL 7.93e-01 -0.0764 0.291 0.056 PB L2
ENSG00000162510 MATN1 960574 sc-eQTL 2.34e-01 -0.264 0.22 0.056 PB L2
ENSG00000162511 LAPTM5 926385 sc-eQTL 4.12e-02 0.321 0.156 0.056 PB L2
ENSG00000162517 PEF1 39263 sc-eQTL 9.38e-01 -0.019 0.244 0.056 PB L2
ENSG00000162521 RBBP4 -966983 sc-eQTL 4.12e-02 -0.376 0.182 0.056 PB L2
ENSG00000175130 MARCKSL1 -652074 sc-eQTL 6.31e-03 0.517 0.186 0.056 PB L2
ENSG00000176261 ZBTB8OS -966744 sc-eQTL 6.64e-01 0.0673 0.155 0.056 PB L2
ENSG00000182866 LCK -567080 sc-eQTL 6.82e-01 0.0992 0.241 0.056 PB L2
ENSG00000184007 PTP4A2 -260697 sc-eQTL 1.04e-01 -0.268 0.164 0.056 PB L2
ENSG00000186056 MATN1-AS1 965655 sc-eQTL 5.76e-01 -0.121 0.217 0.056 PB L2
ENSG00000287510 AL137857.1 952466 sc-eQTL 9.45e-01 0.016 0.231 0.056 PB L2
ENSG00000025800 KPNA6 -423897 sc-eQTL 7.52e-01 0.0635 0.201 0.054 pDC L2
ENSG00000060688 SNRNP40 387371 sc-eQTL 6.03e-01 0.108 0.206 0.054 pDC L2
ENSG00000084623 EIF3I -537769 sc-eQTL 3.78e-01 -0.17 0.192 0.054 pDC L2
ENSG00000084652 TXLNA -495516 sc-eQTL 5.64e-01 -0.114 0.198 0.054 pDC L2
ENSG00000116478 HDAC1 -607924 sc-eQTL 5.09e-01 0.135 0.204 0.054 pDC L2
ENSG00000121766 ZCCHC17 387177 sc-eQTL 2.57e-01 0.257 0.226 0.054 pDC L2
ENSG00000121774 KHDRBS1 -329709 sc-eQTL 1.63e-01 -0.247 0.176 0.054 pDC L2
ENSG00000121775 TMEM39B -387872 sc-eQTL 6.90e-01 -0.0755 0.189 0.054 pDC L2
ENSG00000134644 PUM1 618168 sc-eQTL 9.86e-01 0.00328 0.188 0.054 pDC L2
ENSG00000160050 CCDC28B -516227 sc-eQTL 9.54e-01 -0.011 0.19 0.054 pDC L2
ENSG00000160055 TMEM234 -538200 sc-eQTL 3.90e-01 -0.188 0.217 0.054 pDC L2
ENSG00000160058 BSDC1 -710572 sc-eQTL 1.87e-01 -0.276 0.208 0.054 pDC L2
ENSG00000160062 ZBTB8A -855268 sc-eQTL 4.85e-01 -0.13 0.186 0.054 pDC L2
ENSG00000162511 LAPTM5 926385 sc-eQTL 5.73e-01 -0.0986 0.175 0.054 pDC L2
ENSG00000162517 PEF1 39263 sc-eQTL 5.80e-01 -0.126 0.227 0.054 pDC L2
ENSG00000162521 RBBP4 -966983 sc-eQTL 9.45e-01 -0.00993 0.143 0.054 pDC L2
ENSG00000168528 SERINC2 274594 sc-eQTL 1.80e-02 0.498 0.208 0.054 pDC L2
ENSG00000175130 MARCKSL1 -652074 sc-eQTL 3.65e-01 -0.118 0.129 0.054 pDC L2
ENSG00000176261 ZBTB8OS -966744 sc-eQTL 7.70e-01 0.0613 0.209 0.054 pDC L2
ENSG00000182866 LCK -567080 sc-eQTL 5.47e-01 0.097 0.161 0.054 pDC L2
ENSG00000184007 PTP4A2 -260697 sc-eQTL 9.19e-01 -0.0173 0.17 0.054 pDC L2
ENSG00000225828 FAM229A -680119 sc-eQTL 6.12e-01 -0.105 0.207 0.054 pDC L2
ENSG00000284543 LINC01226 177933 sc-eQTL 9.35e-01 0.0134 0.165 0.054 pDC L2
ENSG00000287510 AL137857.1 952466 sc-eQTL 6.34e-01 0.0924 0.193 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121766 ZCCHC17 387177 eQTL 4.43e-02 0.118 0.0587 0.0 0.0 0.024
ENSG00000168528 SERINC2 274594 eQTL 0.0258 0.285 0.127 0.0 0.0 0.024
ENSG00000186056 MATN1-AS1 965655 eQTL 6.04e-03 -0.114 0.0415 0.00342 0.0 0.024
ENSG00000228634 AL136115.1 -248861 eQTL 0.0447 0.231 0.115 0.00135 0.0 0.024

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 ZCCHC17 387177 8.21e-07 6.09e-07 1.29e-07 3.61e-07 1.05e-07 1.74e-07 4.42e-07 8.11e-08 3.17e-07 2.06e-07 6.39e-07 4.03e-07 6.08e-07 1.41e-07 2.35e-07 1.75e-07 9.53e-08 3.12e-07 1.36e-07 8.11e-08 1.35e-07 2.76e-07 3.02e-07 9.63e-08 6.02e-07 1.86e-07 2.52e-07 1.88e-07 2.84e-07 3.93e-07 2.31e-07 5.22e-08 4.87e-08 1.27e-07 3.4e-07 5.2e-08 7.63e-08 6.31e-08 4.9e-08 7.78e-08 6.28e-08 2.91e-07 5.38e-08 1.22e-08 7.93e-08 1.59e-08 1.04e-07 1.15e-08 4.61e-08
ENSG00000186056 MATN1-AS1 965655 2.66e-07 1.01e-07 3.62e-08 1.78e-07 9.65e-08 9.32e-08 1.39e-07 5.21e-08 1.42e-07 4.24e-08 1.62e-07 7.88e-08 1.27e-07 6.21e-08 5.55e-08 8.01e-08 4.94e-08 1.07e-07 5.2e-08 3.74e-08 1.03e-07 1.33e-07 1.29e-07 4.67e-08 1.29e-07 1.13e-07 1.12e-07 8.71e-08 9.97e-08 1.1e-07 9.75e-08 3.89e-08 2.74e-08 8.3e-08 9.15e-08 3.93e-08 4.78e-08 9.25e-08 8.42e-08 3.59e-08 2.99e-08 1.39e-07 3.99e-08 1.18e-08 7.91e-08 1.7e-08 1.26e-07 4.14e-09 4.85e-08
ENSG00000220785 \N -557461 3.02e-07 1.51e-07 6.41e-08 2.2e-07 1.01e-07 8.33e-08 1.73e-07 5.48e-08 1.5e-07 6.75e-08 1.63e-07 1.31e-07 1.79e-07 8e-08 5.62e-08 7.74e-08 4.09e-08 1.44e-07 6.32e-08 4.8e-08 1.19e-07 1.25e-07 1.58e-07 2.87e-08 1.68e-07 1.14e-07 1.17e-07 1.01e-07 1.26e-07 1.03e-07 1.07e-07 3.08e-08 3.89e-08 8.89e-08 3.36e-08 2.99e-08 5.7e-08 8.72e-08 6.63e-08 3.87e-08 3.59e-08 1.46e-07 3.08e-08 2.04e-08 3.81e-08 1.55e-08 1.2e-07 2e-09 5.04e-08