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Genes within 1Mb (chr1:31647454:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -460602 sc-eQTL 1.96e-01 -0.285 0.219 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 350666 sc-eQTL 9.69e-01 -0.00834 0.213 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -574474 sc-eQTL 4.64e-01 0.142 0.194 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -532221 sc-eQTL 9.16e-01 -0.0206 0.195 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -644629 sc-eQTL 1.24e-01 0.292 0.189 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 350472 sc-eQTL 4.80e-01 0.144 0.204 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -366414 sc-eQTL 2.56e-01 0.212 0.186 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -424577 sc-eQTL 3.64e-01 0.186 0.204 0.05 CD8_TEM L2
ENSG00000134644 PUM1 581463 sc-eQTL 9.95e-01 -0.00141 0.209 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -552932 sc-eQTL 5.88e-01 0.101 0.186 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -574905 sc-eQTL 9.31e-01 -0.018 0.209 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -747277 sc-eQTL 2.59e-01 -0.244 0.216 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 889680 sc-eQTL 2.17e-01 0.242 0.196 0.05 CD8_TEM L2
ENSG00000162517 PEF1 2558 sc-eQTL 2.43e-01 0.216 0.184 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -688779 sc-eQTL 9.57e-01 -0.00901 0.166 0.05 CD8_TEM L2
ENSG00000182866 LCK -603785 sc-eQTL 7.03e-01 0.0392 0.103 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -297402 sc-eQTL 1.86e-01 -0.215 0.162 0.05 CD8_TEM L2
ENSG00000186056 MATN1-AS1 928950 sc-eQTL 6.25e-01 0.0997 0.204 0.05 CD8_TEM L2
ENSG00000287510 AL137857.1 915761 sc-eQTL 5.22e-01 0.118 0.184 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -460602 sc-eQTL 3.25e-02 -0.523 0.242 0.059 PB L2
ENSG00000060688 SNRNP40 350666 sc-eQTL 1.52e-01 -0.321 0.223 0.059 PB L2
ENSG00000084623 EIF3I -574474 sc-eQTL 4.54e-02 0.289 0.143 0.059 PB L2
ENSG00000084652 TXLNA -532221 sc-eQTL 3.78e-01 0.17 0.192 0.059 PB L2
ENSG00000116478 HDAC1 -644629 sc-eQTL 8.85e-01 -0.0323 0.224 0.059 PB L2
ENSG00000121766 ZCCHC17 350472 sc-eQTL 2.49e-01 0.3 0.259 0.059 PB L2
ENSG00000121774 KHDRBS1 -366414 sc-eQTL 2.93e-01 0.212 0.2 0.059 PB L2
ENSG00000121775 TMEM39B -424577 sc-eQTL 2.54e-02 -0.513 0.226 0.059 PB L2
ENSG00000134644 PUM1 581463 sc-eQTL 3.39e-01 0.217 0.225 0.059 PB L2
ENSG00000160050 CCDC28B -552932 sc-eQTL 5.61e-02 -0.418 0.217 0.059 PB L2
ENSG00000160055 TMEM234 -574905 sc-eQTL 2.31e-01 -0.303 0.252 0.059 PB L2
ENSG00000160058 BSDC1 -747277 sc-eQTL 1.96e-01 -0.358 0.275 0.059 PB L2
ENSG00000162510 MATN1 923869 sc-eQTL 1.14e-01 -0.333 0.209 0.059 PB L2
ENSG00000162511 LAPTM5 889680 sc-eQTL 4.54e-01 0.113 0.15 0.059 PB L2
ENSG00000162517 PEF1 2558 sc-eQTL 5.93e-01 -0.124 0.232 0.059 PB L2
ENSG00000175130 MARCKSL1 -688779 sc-eQTL 1.14e-01 0.288 0.181 0.059 PB L2
ENSG00000182866 LCK -603785 sc-eQTL 4.75e-01 0.164 0.229 0.059 PB L2
ENSG00000184007 PTP4A2 -297402 sc-eQTL 7.42e-01 -0.0519 0.157 0.059 PB L2
ENSG00000186056 MATN1-AS1 928950 sc-eQTL 7.64e-01 0.062 0.206 0.059 PB L2
ENSG00000287510 AL137857.1 915761 sc-eQTL 3.09e-01 -0.223 0.219 0.059 PB L2
ENSG00000025800 KPNA6 -460602 sc-eQTL 1.07e-01 -0.356 0.22 0.051 cDC L2
ENSG00000060688 SNRNP40 350666 sc-eQTL 4.46e-01 0.162 0.212 0.051 cDC L2
ENSG00000084623 EIF3I -574474 sc-eQTL 6.38e-01 0.084 0.178 0.051 cDC L2
ENSG00000084652 TXLNA -532221 sc-eQTL 8.21e-01 0.0524 0.231 0.051 cDC L2
ENSG00000116478 HDAC1 -644629 sc-eQTL 3.90e-01 0.175 0.203 0.051 cDC L2
ENSG00000121766 ZCCHC17 350472 sc-eQTL 5.10e-01 0.152 0.23 0.051 cDC L2
ENSG00000121774 KHDRBS1 -366414 sc-eQTL 8.54e-01 0.0307 0.167 0.051 cDC L2
ENSG00000121775 TMEM39B -424577 sc-eQTL 3.82e-02 -0.41 0.196 0.051 cDC L2
ENSG00000134644 PUM1 581463 sc-eQTL 2.03e-01 0.252 0.197 0.051 cDC L2
ENSG00000160050 CCDC28B -552932 sc-eQTL 4.99e-01 -0.149 0.22 0.051 cDC L2
ENSG00000160055 TMEM234 -574905 sc-eQTL 3.77e-01 0.18 0.203 0.051 cDC L2
ENSG00000160058 BSDC1 -747277 sc-eQTL 4.98e-01 -0.151 0.222 0.051 cDC L2
ENSG00000160062 ZBTB8A -891973 sc-eQTL 9.97e-01 -0.000688 0.168 0.051 cDC L2
ENSG00000162511 LAPTM5 889680 sc-eQTL 4.68e-01 0.101 0.138 0.051 cDC L2
ENSG00000162517 PEF1 2558 sc-eQTL 6.88e-01 0.0807 0.201 0.051 cDC L2
ENSG00000168528 SERINC2 237889 sc-eQTL 1.54e-02 0.428 0.175 0.051 cDC L2
ENSG00000175130 MARCKSL1 -688779 sc-eQTL 7.13e-01 0.0515 0.14 0.051 cDC L2
ENSG00000182866 LCK -603785 sc-eQTL 3.58e-01 0.143 0.156 0.051 cDC L2
ENSG00000184007 PTP4A2 -297402 sc-eQTL 4.12e-01 -0.138 0.168 0.051 cDC L2
ENSG00000225828 FAM229A -716824 sc-eQTL 6.18e-01 -0.103 0.206 0.051 cDC L2
ENSG00000284543 LINC01226 141228 sc-eQTL 4.71e-01 -0.126 0.175 0.051 cDC L2
ENSG00000287510 AL137857.1 915761 sc-eQTL 6.36e-01 0.0891 0.188 0.051 cDC L2
ENSG00000025800 KPNA6 -460602 sc-eQTL 9.00e-01 -0.0259 0.205 0.051 pDC L2
ENSG00000060688 SNRNP40 350666 sc-eQTL 8.55e-01 0.0387 0.211 0.051 pDC L2
ENSG00000084623 EIF3I -574474 sc-eQTL 6.41e-01 -0.0921 0.197 0.051 pDC L2
ENSG00000084652 TXLNA -532221 sc-eQTL 2.29e-01 -0.243 0.201 0.051 pDC L2
ENSG00000116478 HDAC1 -644629 sc-eQTL 8.39e-01 0.0425 0.209 0.051 pDC L2
ENSG00000121766 ZCCHC17 350472 sc-eQTL 4.69e-01 0.168 0.231 0.051 pDC L2
ENSG00000121774 KHDRBS1 -366414 sc-eQTL 9.21e-01 -0.0181 0.181 0.051 pDC L2
ENSG00000121775 TMEM39B -424577 sc-eQTL 4.33e-01 0.152 0.193 0.051 pDC L2
ENSG00000134644 PUM1 581463 sc-eQTL 4.49e-01 0.146 0.192 0.051 pDC L2
ENSG00000160050 CCDC28B -552932 sc-eQTL 3.33e-01 -0.188 0.193 0.051 pDC L2
ENSG00000160055 TMEM234 -574905 sc-eQTL 2.72e-01 -0.244 0.222 0.051 pDC L2
ENSG00000160058 BSDC1 -747277 sc-eQTL 4.28e-01 -0.17 0.214 0.051 pDC L2
ENSG00000160062 ZBTB8A -891973 sc-eQTL 2.30e-01 -0.228 0.189 0.051 pDC L2
ENSG00000162511 LAPTM5 889680 sc-eQTL 4.74e-01 0.128 0.178 0.051 pDC L2
ENSG00000162517 PEF1 2558 sc-eQTL 9.04e-01 0.0281 0.232 0.051 pDC L2
ENSG00000168528 SERINC2 237889 sc-eQTL 3.41e-03 0.627 0.211 0.051 pDC L2
ENSG00000175130 MARCKSL1 -688779 sc-eQTL 5.36e-01 -0.0821 0.132 0.051 pDC L2
ENSG00000182866 LCK -603785 sc-eQTL 1.94e-01 0.213 0.164 0.051 pDC L2
ENSG00000184007 PTP4A2 -297402 sc-eQTL 9.64e-02 0.288 0.172 0.051 pDC L2
ENSG00000225828 FAM229A -716824 sc-eQTL 7.61e-01 -0.0645 0.212 0.051 pDC L2
ENSG00000284543 LINC01226 141228 sc-eQTL 7.90e-01 -0.0448 0.168 0.051 pDC L2
ENSG00000287510 AL137857.1 915761 sc-eQTL 9.60e-01 -0.01 0.198 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000160051 IQCC -558207 eQTL 0.0575 -0.11 0.0578 0.00101 0.0 0.0275

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134644 \N 581463 2.66e-07 1.01e-07 3.71e-08 1.82e-07 9.65e-08 9.87e-08 1.38e-07 5.21e-08 1.41e-07 4.4e-08 1.62e-07 8.02e-08 1.26e-07 6.21e-08 5.53e-08 7.5e-08 4.94e-08 1.14e-07 6.32e-08 4.2e-08 1.04e-07 1.28e-07 1.26e-07 4.53e-08 1.31e-07 1.14e-07 1.12e-07 8.71e-08 1.03e-07 1.1e-07 9.58e-08 3.82e-08 2.74e-08 8.68e-08 8.96e-08 3.9e-08 4.72e-08 9.62e-08 7.63e-08 3.18e-08 4.44e-08 1.36e-07 3.99e-08 2e-08 6.92e-08 1.99e-08 1.26e-07 4.2e-09 4.69e-08
ENSG00000168528 \N 237889 1.11e-06 9.36e-07 3.48e-07 1.15e-06 9.9e-08 4.57e-07 1.13e-06 1.56e-07 8.61e-07 4.32e-07 1.16e-06 4.21e-07 1.56e-06 2.54e-07 5.28e-07 6.35e-07 4.87e-07 5.67e-07 6.6e-07 6.68e-07 3.49e-07 7.06e-07 7.76e-07 5.25e-07 1.8e-06 4.36e-07 5.04e-07 5.8e-07 8.97e-07 9.08e-07 4.59e-07 5.35e-08 4.57e-08 5.53e-07 4.36e-07 2.54e-07 5.61e-07 1.65e-07 3.73e-07 4.17e-08 1.3e-07 1.59e-06 6.13e-08 1.57e-07 1.59e-07 1.73e-07 1.49e-07 5.45e-08 1.56e-07
ENSG00000184007 \N -297402 5.37e-07 4.78e-07 1.31e-07 3.22e-07 1.05e-07 2.54e-07 5.65e-07 6.72e-08 3.51e-07 2.87e-07 4.74e-07 1.72e-07 7.02e-07 1.41e-07 3.16e-07 2.23e-07 8.42e-08 3.79e-07 4.7e-07 1.8e-07 1.97e-07 2.99e-07 3.84e-07 1.36e-07 7.42e-07 2.52e-07 2.22e-07 2.65e-07 3.58e-07 3.8e-07 2.54e-07 5.32e-08 4.87e-08 1.54e-07 3.52e-07 5.2e-08 1.4e-07 1.03e-07 7.63e-08 2.53e-08 3.6e-08 6.15e-07 5.44e-08 1.68e-07 1.16e-07 4.48e-08 1.04e-07 1.79e-08 1.97e-07