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Genes within 1Mb (chr1:31637227:AAGACTCCTTCAC:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -470829 sc-eQTL 3.34e-01 -0.213 0.22 0.05 CD4_CTL L2
ENSG00000060688 SNRNP40 340439 sc-eQTL 6.10e-01 0.105 0.206 0.05 CD4_CTL L2
ENSG00000084623 EIF3I -584701 sc-eQTL 5.96e-01 -0.0991 0.187 0.05 CD4_CTL L2
ENSG00000084652 TXLNA -542448 sc-eQTL 2.58e-01 -0.224 0.198 0.05 CD4_CTL L2
ENSG00000116478 HDAC1 -654856 sc-eQTL 7.26e-01 -0.0681 0.194 0.05 CD4_CTL L2
ENSG00000121766 ZCCHC17 340245 sc-eQTL 6.17e-01 -0.102 0.203 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 -376641 sc-eQTL 7.51e-01 -0.054 0.17 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B -434804 sc-eQTL 1.17e-01 0.328 0.208 0.05 CD4_CTL L2
ENSG00000134644 PUM1 571236 sc-eQTL 8.53e-02 0.342 0.198 0.05 CD4_CTL L2
ENSG00000160050 CCDC28B -563159 sc-eQTL 7.98e-01 0.0507 0.198 0.05 CD4_CTL L2
ENSG00000160055 TMEM234 -585132 sc-eQTL 3.28e-01 -0.209 0.213 0.05 CD4_CTL L2
ENSG00000160058 BSDC1 -757504 sc-eQTL 4.38e-01 0.159 0.205 0.05 CD4_CTL L2
ENSG00000162511 LAPTM5 879453 sc-eQTL 3.34e-01 0.172 0.177 0.05 CD4_CTL L2
ENSG00000162517 PEF1 -7669 sc-eQTL 8.19e-01 -0.0416 0.182 0.05 CD4_CTL L2
ENSG00000175130 MARCKSL1 -699006 sc-eQTL 8.43e-01 -0.0397 0.2 0.05 CD4_CTL L2
ENSG00000182866 LCK -614012 sc-eQTL 8.78e-01 0.0216 0.141 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 -307629 sc-eQTL 7.79e-01 0.0317 0.113 0.05 CD4_CTL L2
ENSG00000186056 MATN1-AS1 918723 sc-eQTL 4.35e-01 0.152 0.194 0.05 CD4_CTL L2
ENSG00000225828 FAM229A -727051 sc-eQTL 4.04e-01 -0.156 0.186 0.05 CD4_CTL L2
ENSG00000287510 AL137857.1 905534 sc-eQTL 1.61e-02 0.41 0.169 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 -470829 sc-eQTL 1.52e-01 -0.314 0.218 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 340439 sc-eQTL 8.16e-01 0.0496 0.212 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -584701 sc-eQTL 7.01e-01 0.0745 0.194 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -542448 sc-eQTL 7.25e-01 -0.0686 0.195 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -654856 sc-eQTL 5.37e-01 0.117 0.19 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 340245 sc-eQTL 4.23e-03 0.577 0.199 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -376641 sc-eQTL 6.49e-01 0.0847 0.186 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -434804 sc-eQTL 1.87e-01 0.269 0.203 0.05 CD8_TEM L2
ENSG00000134644 PUM1 571236 sc-eQTL 6.29e-01 0.101 0.208 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -563159 sc-eQTL 6.74e-01 0.0779 0.185 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -585132 sc-eQTL 6.08e-01 0.107 0.208 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -757504 sc-eQTL 8.35e-01 -0.0449 0.216 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 879453 sc-eQTL 5.20e-01 -0.126 0.196 0.05 CD8_TEM L2
ENSG00000162517 PEF1 -7669 sc-eQTL 2.85e-01 0.197 0.184 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -699006 sc-eQTL 6.62e-01 0.0722 0.165 0.05 CD8_TEM L2
ENSG00000182866 LCK -614012 sc-eQTL 2.95e-01 0.107 0.102 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -307629 sc-eQTL 5.31e-01 -0.102 0.162 0.05 CD8_TEM L2
ENSG00000186056 MATN1-AS1 918723 sc-eQTL 2.31e-01 -0.243 0.202 0.05 CD8_TEM L2
ENSG00000287510 AL137857.1 905534 sc-eQTL 1.69e-01 0.253 0.183 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -470829 sc-eQTL 4.69e-03 0.716 0.249 0.052 gdT L2
ENSG00000060688 SNRNP40 340439 sc-eQTL 6.87e-01 -0.104 0.258 0.052 gdT L2
ENSG00000084623 EIF3I -584701 sc-eQTL 7.26e-01 0.0866 0.247 0.052 gdT L2
ENSG00000084652 TXLNA -542448 sc-eQTL 5.85e-01 -0.122 0.223 0.052 gdT L2
ENSG00000116478 HDAC1 -654856 sc-eQTL 8.04e-01 0.0537 0.216 0.052 gdT L2
ENSG00000121766 ZCCHC17 340245 sc-eQTL 1.12e-01 0.351 0.22 0.052 gdT L2
ENSG00000121774 KHDRBS1 -376641 sc-eQTL 1.46e-01 -0.301 0.206 0.052 gdT L2
ENSG00000121775 TMEM39B -434804 sc-eQTL 5.64e-01 0.134 0.232 0.052 gdT L2
ENSG00000134644 PUM1 571236 sc-eQTL 5.26e-01 -0.145 0.228 0.052 gdT L2
ENSG00000160050 CCDC28B -563159 sc-eQTL 8.90e-01 0.0277 0.2 0.052 gdT L2
ENSG00000160055 TMEM234 -585132 sc-eQTL 3.60e-01 -0.213 0.232 0.052 gdT L2
ENSG00000160058 BSDC1 -757504 sc-eQTL 1.15e-02 -0.598 0.234 0.052 gdT L2
ENSG00000162511 LAPTM5 879453 sc-eQTL 1.01e-02 0.633 0.243 0.052 gdT L2
ENSG00000162517 PEF1 -7669 sc-eQTL 8.63e-01 0.0393 0.227 0.052 gdT L2
ENSG00000175130 MARCKSL1 -699006 sc-eQTL 3.20e-01 -0.214 0.215 0.052 gdT L2
ENSG00000182866 LCK -614012 sc-eQTL 8.32e-01 -0.0301 0.141 0.052 gdT L2
ENSG00000184007 PTP4A2 -307629 sc-eQTL 2.74e-02 0.423 0.19 0.052 gdT L2
ENSG00000186056 MATN1-AS1 918723 sc-eQTL 3.14e-01 -0.231 0.229 0.052 gdT L2
ENSG00000287510 AL137857.1 905534 sc-eQTL 3.75e-01 0.197 0.222 0.052 gdT L2
ENSG00000025800 KPNA6 -470829 sc-eQTL 9.65e-01 0.00915 0.205 0.051 pDC L2
ENSG00000060688 SNRNP40 340439 sc-eQTL 3.84e-01 0.184 0.211 0.051 pDC L2
ENSG00000084623 EIF3I -584701 sc-eQTL 6.29e-01 -0.0954 0.197 0.051 pDC L2
ENSG00000084652 TXLNA -542448 sc-eQTL 5.88e-01 -0.11 0.202 0.051 pDC L2
ENSG00000116478 HDAC1 -654856 sc-eQTL 9.76e-01 -0.00635 0.209 0.051 pDC L2
ENSG00000121766 ZCCHC17 340245 sc-eQTL 2.81e-01 0.25 0.231 0.051 pDC L2
ENSG00000121774 KHDRBS1 -376641 sc-eQTL 9.97e-02 -0.298 0.18 0.051 pDC L2
ENSG00000121775 TMEM39B -434804 sc-eQTL 9.22e-01 -0.019 0.193 0.051 pDC L2
ENSG00000134644 PUM1 571236 sc-eQTL 4.76e-01 -0.137 0.192 0.051 pDC L2
ENSG00000160050 CCDC28B -563159 sc-eQTL 2.96e-01 -0.203 0.193 0.051 pDC L2
ENSG00000160055 TMEM234 -585132 sc-eQTL 6.62e-02 -0.408 0.22 0.051 pDC L2
ENSG00000160058 BSDC1 -757504 sc-eQTL 1.39e-01 -0.316 0.213 0.051 pDC L2
ENSG00000160062 ZBTB8A -902200 sc-eQTL 2.22e-01 -0.232 0.189 0.051 pDC L2
ENSG00000162511 LAPTM5 879453 sc-eQTL 7.36e-01 -0.0604 0.179 0.051 pDC L2
ENSG00000162517 PEF1 -7669 sc-eQTL 3.26e-01 -0.228 0.231 0.051 pDC L2
ENSG00000168528 SERINC2 227662 sc-eQTL 8.58e-02 0.371 0.215 0.051 pDC L2
ENSG00000175130 MARCKSL1 -699006 sc-eQTL 4.51e-01 -0.1 0.132 0.051 pDC L2
ENSG00000182866 LCK -614012 sc-eQTL 3.77e-01 0.145 0.164 0.051 pDC L2
ENSG00000184007 PTP4A2 -307629 sc-eQTL 6.77e-01 -0.0724 0.174 0.051 pDC L2
ENSG00000225828 FAM229A -727051 sc-eQTL 6.63e-01 -0.0924 0.212 0.051 pDC L2
ENSG00000284543 LINC01226 131001 sc-eQTL 7.55e-01 -0.0525 0.168 0.051 pDC L2
ENSG00000287510 AL137857.1 905534 sc-eQTL 6.66e-01 0.0854 0.198 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121753 ADGRB2 -127666 eQTL 5.55e-02 0.11 0.0576 0.00105 0.0 0.0294
ENSG00000160051 IQCC -568434 eQTL 0.0429 -0.109 0.0538 0.00126 0.0 0.0294
ENSG00000160055 TMEM234 -585132 eQTL 0.0256 0.0747 0.0334 0.00135 0.0 0.0294
ENSG00000162517 PEF1 -7669 eQTL 0.0174 0.102 0.0426 0.0 0.0 0.0294
ENSG00000222046 DCDC2B -571867 eQTL 0.0172 0.176 0.0737 0.00123 0.0 0.0294
ENSG00000269967 AL136115.2 -284614 eQTL 0.0379 0.157 0.0756 0.00144 0.0 0.0294

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084623 \N -584701 1.34e-06 9.09e-07 1.46e-07 3.54e-07 9.93e-08 6.05e-07 1.6e-06 1.38e-07 1.51e-06 2.72e-07 1.84e-06 5.35e-07 1.73e-06 2.1e-07 3.72e-07 2.08e-07 1.62e-07 4.72e-07 1.27e-07 1.41e-07 3.91e-07 1.33e-06 8.27e-07 4.91e-08 1.42e-06 1.26e-07 2.52e-07 4.96e-07 1.19e-06 9.11e-07 7.64e-07 2.99e-08 5.41e-08 1.52e-07 3.03e-07 1.16e-07 5.02e-08 5.71e-08 5.78e-08 6.31e-08 4.39e-08 1.91e-06 3.9e-07 1.74e-07 1.01e-07 8.76e-08 7.61e-08 1.98e-09 5e-08
ENSG00000121753 ADGRB2 -127666 1.88e-05 1.18e-05 1.98e-06 4e-06 2.04e-06 3.82e-06 2.04e-05 1.93e-06 1.41e-05 4.92e-06 2.18e-05 4.64e-06 1.83e-05 3.5e-06 2.72e-06 6.63e-06 3.09e-06 6.33e-06 1.57e-06 1.76e-06 4.61e-06 1.27e-05 1.11e-05 1.97e-06 1.29e-05 1.23e-06 4.07e-06 4.58e-06 1.26e-05 7.58e-06 1.06e-05 4.71e-07 8.87e-07 2.34e-06 1.99e-06 1.16e-06 9.09e-07 4.24e-07 1.34e-06 4.56e-07 1.51e-07 2.28e-05 1.84e-06 1.64e-07 7.96e-07 1.96e-06 1.03e-06 2.46e-07 1.53e-07
ENSG00000121766 \N 340245 4.34e-06 2.39e-06 2.43e-07 1.27e-06 4.27e-07 7.58e-07 2.55e-06 4.32e-07 3.18e-06 7.61e-07 5.73e-06 1.32e-06 3.43e-06 4.11e-07 3.44e-07 9.19e-07 8.49e-07 1.2e-06 4.24e-07 5.27e-07 7.75e-07 3.02e-06 2.16e-06 4.87e-07 2.41e-06 2.4e-07 9.41e-07 1.39e-06 2.18e-06 1.59e-06 2.85e-06 5.71e-08 2.16e-07 5.94e-07 5.69e-07 4.77e-07 1.64e-07 1.47e-07 1.01e-07 1.82e-08 4.07e-08 4.74e-06 3.65e-07 1.68e-07 1.67e-07 3.32e-07 1.18e-07 2.25e-08 5.05e-08
ENSG00000160055 TMEM234 -585132 1.34e-06 9.09e-07 1.46e-07 3.54e-07 9.93e-08 6.05e-07 1.64e-06 1.38e-07 1.51e-06 2.85e-07 1.83e-06 5.35e-07 1.73e-06 2.1e-07 3.72e-07 2.08e-07 1.62e-07 4.72e-07 1.13e-07 1.41e-07 3.91e-07 1.33e-06 8.27e-07 4.91e-08 1.42e-06 1.26e-07 2.52e-07 4.96e-07 1.19e-06 9.11e-07 7.64e-07 2.99e-08 5.41e-08 1.52e-07 3.03e-07 1.16e-07 5.02e-08 5.71e-08 5.78e-08 6.31e-08 3.82e-08 1.91e-06 3.9e-07 1.74e-07 1.01e-07 8.76e-08 7.61e-08 1.98e-09 5e-08
ENSG00000269967 AL136115.2 -284614 4.91e-06 3.13e-06 3.17e-07 1.69e-06 4.82e-07 1.09e-06 4.29e-06 6.87e-07 5.25e-06 1.17e-06 8.47e-06 1.28e-06 5.69e-06 9.92e-07 9.3e-07 1.04e-06 1.14e-06 2.22e-06 8.01e-07 7.22e-07 1.4e-06 4.05e-06 3.17e-06 6.23e-07 3.4e-06 2.53e-07 1.06e-06 1.77e-06 4.08e-06 2e-06 3.43e-06 4.57e-08 3.35e-07 8.98e-07 7.08e-07 6.07e-07 3.79e-07 2.78e-07 1.96e-07 1.54e-07 8.15e-08 5.84e-06 6.3e-07 1.84e-07 2.99e-07 3.64e-07 1.6e-07 4.41e-08 6.17e-08