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Genes within 1Mb (chr1:31619070:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -488986 sc-eQTL 3.34e-01 -0.213 0.22 0.05 CD4_CTL L2
ENSG00000060688 SNRNP40 322282 sc-eQTL 6.10e-01 0.105 0.206 0.05 CD4_CTL L2
ENSG00000084623 EIF3I -602858 sc-eQTL 5.96e-01 -0.0991 0.187 0.05 CD4_CTL L2
ENSG00000084652 TXLNA -560605 sc-eQTL 2.58e-01 -0.224 0.198 0.05 CD4_CTL L2
ENSG00000116478 HDAC1 -673013 sc-eQTL 7.26e-01 -0.0681 0.194 0.05 CD4_CTL L2
ENSG00000121766 ZCCHC17 322088 sc-eQTL 6.17e-01 -0.102 0.203 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 -394798 sc-eQTL 7.51e-01 -0.054 0.17 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B -452961 sc-eQTL 1.17e-01 0.328 0.208 0.05 CD4_CTL L2
ENSG00000134644 PUM1 553079 sc-eQTL 8.53e-02 0.342 0.198 0.05 CD4_CTL L2
ENSG00000160050 CCDC28B -581316 sc-eQTL 7.98e-01 0.0507 0.198 0.05 CD4_CTL L2
ENSG00000160055 TMEM234 -603289 sc-eQTL 3.28e-01 -0.209 0.213 0.05 CD4_CTL L2
ENSG00000160058 BSDC1 -775661 sc-eQTL 4.38e-01 0.159 0.205 0.05 CD4_CTL L2
ENSG00000162511 LAPTM5 861296 sc-eQTL 3.34e-01 0.172 0.177 0.05 CD4_CTL L2
ENSG00000162517 PEF1 -25826 sc-eQTL 8.19e-01 -0.0416 0.182 0.05 CD4_CTL L2
ENSG00000175130 MARCKSL1 -717163 sc-eQTL 8.43e-01 -0.0397 0.2 0.05 CD4_CTL L2
ENSG00000182866 LCK -632169 sc-eQTL 8.78e-01 0.0216 0.141 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 -325786 sc-eQTL 7.79e-01 0.0317 0.113 0.05 CD4_CTL L2
ENSG00000186056 MATN1-AS1 900566 sc-eQTL 4.35e-01 0.152 0.194 0.05 CD4_CTL L2
ENSG00000225828 FAM229A -745208 sc-eQTL 4.04e-01 -0.156 0.186 0.05 CD4_CTL L2
ENSG00000287510 AL137857.1 887377 sc-eQTL 1.61e-02 0.41 0.169 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 -488986 sc-eQTL 1.52e-01 -0.314 0.218 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 322282 sc-eQTL 8.16e-01 0.0496 0.212 0.05 CD8_TEM L2
ENSG00000084623 EIF3I -602858 sc-eQTL 7.01e-01 0.0745 0.194 0.05 CD8_TEM L2
ENSG00000084652 TXLNA -560605 sc-eQTL 7.25e-01 -0.0686 0.195 0.05 CD8_TEM L2
ENSG00000116478 HDAC1 -673013 sc-eQTL 5.37e-01 0.117 0.19 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 322088 sc-eQTL 4.23e-03 0.577 0.199 0.05 CD8_TEM L2
ENSG00000121774 KHDRBS1 -394798 sc-eQTL 6.49e-01 0.0847 0.186 0.05 CD8_TEM L2
ENSG00000121775 TMEM39B -452961 sc-eQTL 1.87e-01 0.269 0.203 0.05 CD8_TEM L2
ENSG00000134644 PUM1 553079 sc-eQTL 6.29e-01 0.101 0.208 0.05 CD8_TEM L2
ENSG00000160050 CCDC28B -581316 sc-eQTL 6.74e-01 0.0779 0.185 0.05 CD8_TEM L2
ENSG00000160055 TMEM234 -603289 sc-eQTL 6.08e-01 0.107 0.208 0.05 CD8_TEM L2
ENSG00000160058 BSDC1 -775661 sc-eQTL 8.35e-01 -0.0449 0.216 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 861296 sc-eQTL 5.20e-01 -0.126 0.196 0.05 CD8_TEM L2
ENSG00000162517 PEF1 -25826 sc-eQTL 2.85e-01 0.197 0.184 0.05 CD8_TEM L2
ENSG00000175130 MARCKSL1 -717163 sc-eQTL 6.62e-01 0.0722 0.165 0.05 CD8_TEM L2
ENSG00000182866 LCK -632169 sc-eQTL 2.95e-01 0.107 0.102 0.05 CD8_TEM L2
ENSG00000184007 PTP4A2 -325786 sc-eQTL 5.31e-01 -0.102 0.162 0.05 CD8_TEM L2
ENSG00000186056 MATN1-AS1 900566 sc-eQTL 2.31e-01 -0.243 0.202 0.05 CD8_TEM L2
ENSG00000287510 AL137857.1 887377 sc-eQTL 1.69e-01 0.253 0.183 0.05 CD8_TEM L2
ENSG00000025800 KPNA6 -488986 sc-eQTL 4.69e-03 0.716 0.249 0.052 gdT L2
ENSG00000060688 SNRNP40 322282 sc-eQTL 6.87e-01 -0.104 0.258 0.052 gdT L2
ENSG00000084623 EIF3I -602858 sc-eQTL 7.26e-01 0.0866 0.247 0.052 gdT L2
ENSG00000084652 TXLNA -560605 sc-eQTL 5.85e-01 -0.122 0.223 0.052 gdT L2
ENSG00000116478 HDAC1 -673013 sc-eQTL 8.04e-01 0.0537 0.216 0.052 gdT L2
ENSG00000121766 ZCCHC17 322088 sc-eQTL 1.12e-01 0.351 0.22 0.052 gdT L2
ENSG00000121774 KHDRBS1 -394798 sc-eQTL 1.46e-01 -0.301 0.206 0.052 gdT L2
ENSG00000121775 TMEM39B -452961 sc-eQTL 5.64e-01 0.134 0.232 0.052 gdT L2
ENSG00000134644 PUM1 553079 sc-eQTL 5.26e-01 -0.145 0.228 0.052 gdT L2
ENSG00000160050 CCDC28B -581316 sc-eQTL 8.90e-01 0.0277 0.2 0.052 gdT L2
ENSG00000160055 TMEM234 -603289 sc-eQTL 3.60e-01 -0.213 0.232 0.052 gdT L2
ENSG00000160058 BSDC1 -775661 sc-eQTL 1.15e-02 -0.598 0.234 0.052 gdT L2
ENSG00000162511 LAPTM5 861296 sc-eQTL 1.01e-02 0.633 0.243 0.052 gdT L2
ENSG00000162517 PEF1 -25826 sc-eQTL 8.63e-01 0.0393 0.227 0.052 gdT L2
ENSG00000175130 MARCKSL1 -717163 sc-eQTL 3.20e-01 -0.214 0.215 0.052 gdT L2
ENSG00000182866 LCK -632169 sc-eQTL 8.32e-01 -0.0301 0.141 0.052 gdT L2
ENSG00000184007 PTP4A2 -325786 sc-eQTL 2.74e-02 0.423 0.19 0.052 gdT L2
ENSG00000186056 MATN1-AS1 900566 sc-eQTL 3.14e-01 -0.231 0.229 0.052 gdT L2
ENSG00000287510 AL137857.1 887377 sc-eQTL 3.75e-01 0.197 0.222 0.052 gdT L2
ENSG00000025800 KPNA6 -488986 sc-eQTL 9.65e-01 0.00915 0.205 0.051 pDC L2
ENSG00000060688 SNRNP40 322282 sc-eQTL 3.84e-01 0.184 0.211 0.051 pDC L2
ENSG00000084623 EIF3I -602858 sc-eQTL 6.29e-01 -0.0954 0.197 0.051 pDC L2
ENSG00000084652 TXLNA -560605 sc-eQTL 5.88e-01 -0.11 0.202 0.051 pDC L2
ENSG00000116478 HDAC1 -673013 sc-eQTL 9.76e-01 -0.00635 0.209 0.051 pDC L2
ENSG00000121766 ZCCHC17 322088 sc-eQTL 2.81e-01 0.25 0.231 0.051 pDC L2
ENSG00000121774 KHDRBS1 -394798 sc-eQTL 9.97e-02 -0.298 0.18 0.051 pDC L2
ENSG00000121775 TMEM39B -452961 sc-eQTL 9.22e-01 -0.019 0.193 0.051 pDC L2
ENSG00000134644 PUM1 553079 sc-eQTL 4.76e-01 -0.137 0.192 0.051 pDC L2
ENSG00000160050 CCDC28B -581316 sc-eQTL 2.96e-01 -0.203 0.193 0.051 pDC L2
ENSG00000160055 TMEM234 -603289 sc-eQTL 6.62e-02 -0.408 0.22 0.051 pDC L2
ENSG00000160058 BSDC1 -775661 sc-eQTL 1.39e-01 -0.316 0.213 0.051 pDC L2
ENSG00000160062 ZBTB8A -920357 sc-eQTL 2.22e-01 -0.232 0.189 0.051 pDC L2
ENSG00000162511 LAPTM5 861296 sc-eQTL 7.36e-01 -0.0604 0.179 0.051 pDC L2
ENSG00000162517 PEF1 -25826 sc-eQTL 3.26e-01 -0.228 0.231 0.051 pDC L2
ENSG00000168528 SERINC2 209505 sc-eQTL 8.58e-02 0.371 0.215 0.051 pDC L2
ENSG00000175130 MARCKSL1 -717163 sc-eQTL 4.51e-01 -0.1 0.132 0.051 pDC L2
ENSG00000182866 LCK -632169 sc-eQTL 3.77e-01 0.145 0.164 0.051 pDC L2
ENSG00000184007 PTP4A2 -325786 sc-eQTL 6.77e-01 -0.0724 0.174 0.051 pDC L2
ENSG00000225828 FAM229A -745208 sc-eQTL 6.63e-01 -0.0924 0.212 0.051 pDC L2
ENSG00000284543 LINC01226 112844 sc-eQTL 7.55e-01 -0.0525 0.168 0.051 pDC L2
ENSG00000287510 AL137857.1 887377 sc-eQTL 6.66e-01 0.0854 0.198 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121753 ADGRB2 -145823 eQTL 5.30e-02 0.112 0.0576 0.00108 0.0 0.0294
ENSG00000160051 IQCC -586591 eQTL 0.0432 -0.109 0.0538 0.00126 0.0 0.0294
ENSG00000160055 TMEM234 -603289 eQTL 0.028 0.0734 0.0334 0.00128 0.0 0.0294
ENSG00000162517 PEF1 -25826 eQTL 0.0178 0.101 0.0426 0.0 0.0 0.0294
ENSG00000222046 DCDC2B -590024 eQTL 0.018 0.174 0.0736 0.00121 0.0 0.0294
ENSG00000269967 AL136115.2 -302771 eQTL 0.0344 0.16 0.0755 0.00152 0.0 0.0294

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084623 \N -602858 3.53e-07 2.3e-07 7.92e-08 2.96e-07 1.1e-07 1.25e-07 3.33e-07 7.12e-08 1.86e-07 1.37e-07 2.38e-07 1.82e-07 2.74e-07 8.54e-08 9.12e-08 9.6e-08 6.63e-08 2.9e-07 1.51e-07 8.25e-08 1.68e-07 2.06e-07 1.89e-07 6.65e-08 2.99e-07 1.94e-07 1.31e-07 1.7e-07 1.36e-07 1.38e-07 1.52e-07 3.31e-08 5.42e-08 9.72e-08 3.51e-08 4.6e-08 1.14e-07 6.2e-08 5.7e-08 5.61e-08 4.9e-08 1.63e-07 2.8e-08 8.04e-08 5.49e-08 8.31e-09 7.25e-08 1.24e-08 5.71e-08
ENSG00000121753 ADGRB2 -145823 5.86e-06 8.15e-06 1.28e-06 4.47e-06 1.54e-06 2.55e-06 9.73e-06 1.75e-06 6.18e-06 4.1e-06 1.03e-05 4.49e-06 1.06e-05 2.82e-06 1.67e-06 4.58e-06 3.71e-06 4.46e-06 1.81e-06 2.53e-06 3.57e-06 7.57e-06 5.5e-06 2.14e-06 1.11e-05 2.68e-06 3.74e-06 2.87e-06 6.73e-06 6.17e-06 4.12e-06 9.59e-07 7.23e-07 2.5e-06 2.59e-06 1.6e-06 1.02e-06 1.14e-06 1.34e-06 8.53e-07 8.99e-07 8.33e-06 1.4e-06 1.76e-07 6.87e-07 1.21e-06 1.06e-06 8.43e-07 4.71e-07
ENSG00000121766 \N 322088 1.26e-06 1.08e-06 2.54e-07 1.27e-06 3.23e-07 6.09e-07 1.51e-06 4.08e-07 1.4e-06 5.89e-07 2.08e-06 8.75e-07 2.31e-06 2.86e-07 4.58e-07 8.22e-07 9.01e-07 1.12e-06 6.75e-07 5.52e-07 7.61e-07 1.69e-06 8.94e-07 5.94e-07 2.28e-06 7.4e-07 9.41e-07 8.36e-07 1.38e-06 1.32e-06 8e-07 4.33e-07 3.44e-07 7.04e-07 5.63e-07 4.62e-07 7.36e-07 3.65e-07 4.82e-07 2.06e-07 3.18e-07 1.56e-06 4.93e-07 1.6e-07 2.74e-07 1.29e-07 3.68e-07 2.3e-07 2.32e-07
ENSG00000160055 TMEM234 -603289 3.53e-07 2.3e-07 7.76e-08 2.87e-07 1.1e-07 1.25e-07 3.33e-07 7.12e-08 1.86e-07 1.37e-07 2.38e-07 1.82e-07 2.55e-07 8.54e-08 9.12e-08 9.6e-08 6.63e-08 2.9e-07 1.51e-07 8.25e-08 1.68e-07 2.06e-07 1.89e-07 6.65e-08 2.99e-07 1.94e-07 1.31e-07 1.7e-07 1.34e-07 1.38e-07 1.52e-07 3.28e-08 5.42e-08 9.72e-08 3.51e-08 4.6e-08 1.14e-07 6.2e-08 5.25e-08 5.61e-08 4.84e-08 1.63e-07 2.8e-08 8.04e-08 5.49e-08 8.31e-09 7.25e-08 1.24e-08 5.71e-08
ENSG00000269967 AL136115.2 -302771 1.28e-06 1.36e-06 2.77e-07 1.57e-06 3.45e-07 6.68e-07 1.27e-06 4.33e-07 1.77e-06 6.9e-07 2.02e-06 1.2e-06 2.51e-06 3.41e-07 3.64e-07 9.48e-07 9.75e-07 1.2e-06 5.38e-07 7.6e-07 6.18e-07 1.97e-06 1.12e-06 8.09e-07 2.34e-06 8.82e-07 9.72e-07 1.07e-06 1.63e-06 1.17e-06 8.43e-07 4.73e-07 3.7e-07 6.16e-07 5.3e-07 5.06e-07 7.11e-07 3.25e-07 5.47e-07 2.33e-07 3.59e-07 1.64e-06 5.89e-07 1.82e-07 3.73e-07 1.35e-07 4.62e-07 2.29e-07 2.89e-07