Genes within 1Mb (chr1:31370131:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -737925 sc-eQTL 6.49e-01 0.117 0.256 0.052 PB L2
ENSG00000060688 SNRNP40 73343 sc-eQTL 4.39e-01 0.181 0.233 0.052 PB L2
ENSG00000084623 EIF3I -851797 sc-eQTL 5.39e-01 -0.093 0.151 0.052 PB L2
ENSG00000084652 TXLNA -809544 sc-eQTL 6.09e-01 0.103 0.2 0.052 PB L2
ENSG00000116478 HDAC1 -921952 sc-eQTL 8.56e-01 -0.0423 0.233 0.052 PB L2
ENSG00000121766 ZCCHC17 73149 sc-eQTL 4.81e-01 0.191 0.271 0.052 PB L2
ENSG00000121774 KHDRBS1 -643737 sc-eQTL 6.35e-01 -0.0995 0.209 0.052 PB L2
ENSG00000121775 TMEM39B -701900 sc-eQTL 3.46e-01 -0.227 0.24 0.052 PB L2
ENSG00000134644 PUM1 304140 sc-eQTL 9.94e-01 0.00178 0.236 0.052 PB L2
ENSG00000160050 CCDC28B -830255 sc-eQTL 1.17e-01 -0.358 0.227 0.052 PB L2
ENSG00000160055 TMEM234 -852228 sc-eQTL 6.02e-01 -0.138 0.264 0.052 PB L2
ENSG00000162510 MATN1 646546 sc-eQTL 8.34e-01 0.0461 0.22 0.052 PB L2
ENSG00000162511 LAPTM5 612357 sc-eQTL 2.49e-01 -0.181 0.156 0.052 PB L2
ENSG00000162517 PEF1 -274765 sc-eQTL 5.44e-01 0.147 0.241 0.052 PB L2
ENSG00000175130 MARCKSL1 -966102 sc-eQTL 3.22e-01 -0.188 0.189 0.052 PB L2
ENSG00000182866 LCK -881108 sc-eQTL 8.21e-01 -0.0543 0.239 0.052 PB L2
ENSG00000184007 PTP4A2 -574725 sc-eQTL 2.28e-01 0.197 0.163 0.052 PB L2
ENSG00000186056 MATN1-AS1 651627 sc-eQTL 8.18e-01 0.0496 0.215 0.052 PB L2
ENSG00000287510 AL137857.1 638438 sc-eQTL 4.80e-01 -0.162 0.228 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121766 ZCCHC17 73149 eQTL 1.46e-07 0.243 0.0459 0.0 0.0 0.0388
ENSG00000162512 SDC3 461373 eQTL 0.0372 -0.135 0.0645 0.0 0.0 0.0388
ENSG00000168528 SERINC2 -39434 eQTL 0.000885 -0.336 0.101 0.0339 0.0211 0.0388


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000025800 \N -737925 2.69e-07 1.3e-07 5.49e-08 1.97e-07 9.21e-08 9.9e-08 1.53e-07 5.4e-08 1.44e-07 4.74e-08 1.6e-07 8.59e-08 1.41e-07 7.37e-08 5.91e-08 7.3e-08 3.87e-08 1.26e-07 6.92e-08 4.89e-08 1.22e-07 1.28e-07 1.39e-07 3.23e-08 1.4e-07 1.14e-07 1.07e-07 9.74e-08 1.09e-07 1.1e-07 9.91e-08 3.6e-08 3.89e-08 8e-08 4.92e-08 3.2e-08 4.41e-08 8.93e-08 6.28e-08 4.19e-08 5.65e-08 1.33e-07 5.27e-08 1.14e-08 5.15e-08 1.8e-08 1.15e-07 1.91e-09 4.88e-08
ENSG00000121766 ZCCHC17 73149 6.87e-06 9.33e-06 6.38e-07 4.4e-06 1.54e-06 2.6e-06 9.45e-06 1.28e-06 5.48e-06 3.75e-06 8.9e-06 4.44e-06 1.12e-05 3.74e-06 9.59e-07 4.99e-06 3.71e-06 3.84e-06 1.81e-06 1.48e-06 2.66e-06 7.22e-06 5.58e-06 1.84e-06 1.22e-05 2.05e-06 3.68e-06 2.27e-06 6.83e-06 6.51e-06 3.39e-06 4.46e-07 5.02e-07 2.3e-06 2.6e-06 1.17e-06 1.08e-06 4.7e-07 1.12e-06 7.37e-07 4.63e-07 9.93e-06 8.46e-07 1.88e-07 3.58e-07 9.68e-07 8.85e-07 5.36e-07 3.26e-07