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Genes within 1Mb (chr1:31145218:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -962838 sc-eQTL 7.24e-02 -0.377 0.209 0.051 B_Activated L2
ENSG00000060688 SNRNP40 -151570 sc-eQTL 2.61e-01 0.232 0.206 0.051 B_Activated L2
ENSG00000121766 ZCCHC17 -151764 sc-eQTL 6.25e-01 0.102 0.208 0.051 B_Activated L2
ENSG00000121774 KHDRBS1 -868650 sc-eQTL 6.82e-01 0.0771 0.188 0.051 B_Activated L2
ENSG00000121775 TMEM39B -926813 sc-eQTL 6.43e-01 -0.0916 0.197 0.051 B_Activated L2
ENSG00000134644 PUM1 79227 sc-eQTL 9.72e-01 0.00692 0.194 0.051 B_Activated L2
ENSG00000162510 MATN1 421633 sc-eQTL 9.04e-01 -0.0204 0.169 0.051 B_Activated L2
ENSG00000162511 LAPTM5 387444 sc-eQTL 1.49e-01 -0.17 0.117 0.051 B_Activated L2
ENSG00000162517 PEF1 -499678 sc-eQTL 4.33e-01 0.158 0.2 0.051 B_Activated L2
ENSG00000184007 PTP4A2 -799638 sc-eQTL 2.10e-01 0.183 0.145 0.051 B_Activated L2
ENSG00000186056 MATN1-AS1 426714 sc-eQTL 9.65e-01 0.00837 0.191 0.051 B_Activated L2
ENSG00000287510 AL137857.1 413525 sc-eQTL 7.69e-01 -0.0496 0.169 0.051 B_Activated L2
ENSG00000025800 KPNA6 -962838 sc-eQTL 8.09e-01 0.0482 0.198 0.05 CD4_CTL L2
ENSG00000060688 SNRNP40 -151570 sc-eQTL 8.35e-01 0.0389 0.186 0.05 CD4_CTL L2
ENSG00000121766 ZCCHC17 -151764 sc-eQTL 7.44e-02 -0.326 0.182 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 -868650 sc-eQTL 8.29e-01 0.0332 0.153 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B -926813 sc-eQTL 6.71e-01 -0.0803 0.189 0.05 CD4_CTL L2
ENSG00000134644 PUM1 79227 sc-eQTL 1.34e-01 -0.269 0.179 0.05 CD4_CTL L2
ENSG00000162511 LAPTM5 387444 sc-eQTL 4.48e-01 -0.121 0.16 0.05 CD4_CTL L2
ENSG00000162517 PEF1 -499678 sc-eQTL 6.88e-01 0.066 0.164 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 -799638 sc-eQTL 2.90e-01 0.108 0.102 0.05 CD4_CTL L2
ENSG00000186056 MATN1-AS1 426714 sc-eQTL 3.18e-02 0.374 0.173 0.05 CD4_CTL L2
ENSG00000287510 AL137857.1 413525 sc-eQTL 7.34e-01 0.0526 0.155 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 -962838 sc-eQTL 1.39e-01 -0.293 0.197 0.05 NK_HLA L2
ENSG00000060688 SNRNP40 -151570 sc-eQTL 9.93e-01 0.00188 0.205 0.05 NK_HLA L2
ENSG00000121753 ADGRB2 -619675 sc-eQTL 5.89e-01 0.0878 0.162 0.05 NK_HLA L2
ENSG00000121766 ZCCHC17 -151764 sc-eQTL 1.63e-01 0.255 0.182 0.05 NK_HLA L2
ENSG00000121774 KHDRBS1 -868650 sc-eQTL 4.85e-01 -0.117 0.168 0.05 NK_HLA L2
ENSG00000121775 TMEM39B -926813 sc-eQTL 7.60e-01 -0.0616 0.202 0.05 NK_HLA L2
ENSG00000134644 PUM1 79227 sc-eQTL 8.78e-01 -0.0275 0.178 0.05 NK_HLA L2
ENSG00000162511 LAPTM5 387444 sc-eQTL 1.41e-01 -0.25 0.169 0.05 NK_HLA L2
ENSG00000162517 PEF1 -499678 sc-eQTL 5.19e-01 0.124 0.191 0.05 NK_HLA L2
ENSG00000184007 PTP4A2 -799638 sc-eQTL 5.76e-01 -0.0857 0.153 0.05 NK_HLA L2
ENSG00000186056 MATN1-AS1 426714 sc-eQTL 8.78e-01 -0.0277 0.181 0.05 NK_HLA L2
ENSG00000287510 AL137857.1 413525 sc-eQTL 4.51e-02 -0.349 0.173 0.05 NK_HLA L2
ENSG00000025800 KPNA6 -962838 sc-eQTL 1.01e-01 0.353 0.214 0.056 PB L2
ENSG00000060688 SNRNP40 -151570 sc-eQTL 5.05e-01 0.132 0.197 0.056 PB L2
ENSG00000121766 ZCCHC17 -151764 sc-eQTL 9.36e-01 0.0184 0.229 0.056 PB L2
ENSG00000121774 KHDRBS1 -868650 sc-eQTL 2.39e-01 0.208 0.175 0.056 PB L2
ENSG00000121775 TMEM39B -926813 sc-eQTL 8.69e-01 0.0336 0.203 0.056 PB L2
ENSG00000134644 PUM1 79227 sc-eQTL 1.99e-01 0.255 0.197 0.056 PB L2
ENSG00000162510 MATN1 421633 sc-eQTL 9.01e-01 0.023 0.185 0.056 PB L2
ENSG00000162511 LAPTM5 387444 sc-eQTL 4.11e-01 0.109 0.132 0.056 PB L2
ENSG00000162517 PEF1 -499678 sc-eQTL 5.34e-01 -0.127 0.203 0.056 PB L2
ENSG00000184007 PTP4A2 -799638 sc-eQTL 2.98e-02 -0.298 0.135 0.056 PB L2
ENSG00000186056 MATN1-AS1 426714 sc-eQTL 3.37e-01 0.174 0.18 0.056 PB L2
ENSG00000287510 AL137857.1 413525 sc-eQTL 4.12e-01 0.158 0.192 0.056 PB L2
ENSG00000025800 KPNA6 -962838 sc-eQTL 9.32e-01 -0.0171 0.198 0.051 cDC L2
ENSG00000060688 SNRNP40 -151570 sc-eQTL 8.17e-01 -0.0442 0.19 0.051 cDC L2
ENSG00000121766 ZCCHC17 -151764 sc-eQTL 3.95e-01 -0.175 0.206 0.051 cDC L2
ENSG00000121774 KHDRBS1 -868650 sc-eQTL 2.74e-01 -0.164 0.149 0.051 cDC L2
ENSG00000121775 TMEM39B -926813 sc-eQTL 9.34e-01 -0.0147 0.178 0.051 cDC L2
ENSG00000134644 PUM1 79227 sc-eQTL 1.48e-01 -0.256 0.176 0.051 cDC L2
ENSG00000162511 LAPTM5 387444 sc-eQTL 1.49e-01 -0.179 0.123 0.051 cDC L2
ENSG00000162517 PEF1 -499678 sc-eQTL 4.56e-02 0.358 0.178 0.051 cDC L2
ENSG00000168528 SERINC2 -264347 sc-eQTL 3.96e-02 -0.326 0.157 0.051 cDC L2
ENSG00000184007 PTP4A2 -799638 sc-eQTL 1.18e-01 -0.235 0.15 0.051 cDC L2
ENSG00000284543 LINC01226 -361008 sc-eQTL 9.92e-01 -0.0016 0.157 0.051 cDC L2
ENSG00000287510 AL137857.1 413525 sc-eQTL 1.16e-01 -0.264 0.167 0.051 cDC L2
ENSG00000025800 KPNA6 -962838 sc-eQTL 4.11e-01 -0.201 0.243 0.052 gdT L2
ENSG00000060688 SNRNP40 -151570 sc-eQTL 7.00e-01 0.095 0.246 0.052 gdT L2
ENSG00000121766 ZCCHC17 -151764 sc-eQTL 1.82e-01 0.281 0.21 0.052 gdT L2
ENSG00000121774 KHDRBS1 -868650 sc-eQTL 7.22e-01 0.0701 0.197 0.052 gdT L2
ENSG00000121775 TMEM39B -926813 sc-eQTL 1.38e-01 -0.327 0.219 0.052 gdT L2
ENSG00000134644 PUM1 79227 sc-eQTL 2.66e-01 0.242 0.217 0.052 gdT L2
ENSG00000162511 LAPTM5 387444 sc-eQTL 7.49e-01 -0.0757 0.236 0.052 gdT L2
ENSG00000162517 PEF1 -499678 sc-eQTL 3.45e-01 -0.204 0.216 0.052 gdT L2
ENSG00000184007 PTP4A2 -799638 sc-eQTL 4.31e-01 0.145 0.183 0.052 gdT L2
ENSG00000186056 MATN1-AS1 426714 sc-eQTL 7.89e-01 0.0584 0.218 0.052 gdT L2
ENSG00000287510 AL137857.1 413525 sc-eQTL 4.06e-01 -0.176 0.211 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168528 SERINC2 -264347 eQTL 0.00194 -0.265 0.0852 0.0 0.0 0.051

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina