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Genes within 1Mb (chr1:30912340:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.13e-01 -0.0422 0.115 0.872 B L1
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 6.20e-02 -0.171 0.0911 0.872 B L1
ENSG00000134644 PUM1 -153651 sc-eQTL 9.45e-01 -0.00534 0.077 0.872 B L1
ENSG00000162510 MATN1 188755 sc-eQTL 1.57e-01 0.114 0.0806 0.872 B L1
ENSG00000162511 LAPTM5 154566 sc-eQTL 3.40e-01 0.0606 0.0633 0.872 B L1
ENSG00000162517 PEF1 -732556 sc-eQTL 6.67e-01 -0.0413 0.0957 0.872 B L1
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 4.56e-01 0.0554 0.0742 0.872 B L1
ENSG00000287510 AL137857.1 180647 sc-eQTL 4.12e-01 -0.0721 0.0878 0.872 B L1
ENSG00000060688 SNRNP40 -384448 sc-eQTL 6.94e-01 -0.0383 0.0972 0.872 CD4T L1
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 3.54e-01 0.0704 0.0759 0.872 CD4T L1
ENSG00000134644 PUM1 -153651 sc-eQTL 3.40e-02 0.143 0.0669 0.872 CD4T L1
ENSG00000162511 LAPTM5 154566 sc-eQTL 7.74e-01 -0.0215 0.075 0.872 CD4T L1
ENSG00000162517 PEF1 -732556 sc-eQTL 3.84e-01 -0.0682 0.0783 0.872 CD4T L1
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 6.12e-01 -0.034 0.067 0.872 CD4T L1
ENSG00000287510 AL137857.1 180647 sc-eQTL 4.94e-01 -0.0549 0.0803 0.872 CD4T L1
ENSG00000060688 SNRNP40 -384448 sc-eQTL 6.25e-01 -0.0628 0.128 0.872 CD8T L1
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 6.54e-01 0.0383 0.0852 0.872 CD8T L1
ENSG00000134644 PUM1 -153651 sc-eQTL 1.30e-01 0.114 0.0747 0.872 CD8T L1
ENSG00000162511 LAPTM5 154566 sc-eQTL 4.74e-01 0.0523 0.0728 0.872 CD8T L1
ENSG00000162517 PEF1 -732556 sc-eQTL 6.09e-01 -0.0459 0.0898 0.872 CD8T L1
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 4.98e-01 0.058 0.0854 0.872 CD8T L1
ENSG00000287510 AL137857.1 180647 sc-eQTL 7.58e-01 -0.0331 0.107 0.872 CD8T L1
ENSG00000060688 SNRNP40 -384448 sc-eQTL 6.00e-01 -0.0594 0.113 0.867 DC L1
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 7.92e-01 -0.0354 0.134 0.867 DC L1
ENSG00000134644 PUM1 -153651 sc-eQTL 5.28e-01 -0.0662 0.105 0.867 DC L1
ENSG00000162511 LAPTM5 154566 sc-eQTL 7.73e-01 0.0216 0.0749 0.867 DC L1
ENSG00000162517 PEF1 -732556 sc-eQTL 6.58e-01 0.0537 0.121 0.867 DC L1
ENSG00000168528 SERINC2 -497225 sc-eQTL 2.77e-01 0.134 0.123 0.867 DC L1
ENSG00000284543 LINC01226 -593886 sc-eQTL 6.07e-01 0.0422 0.0818 0.867 DC L1
ENSG00000287510 AL137857.1 180647 sc-eQTL 5.81e-01 0.0654 0.118 0.867 DC L1
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.75e-01 0.0252 0.088 0.872 Mono L1
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 9.81e-01 0.00263 0.109 0.872 Mono L1
ENSG00000134644 PUM1 -153651 sc-eQTL 3.45e-01 -0.0661 0.0698 0.872 Mono L1
ENSG00000162511 LAPTM5 154566 sc-eQTL 7.28e-01 0.0224 0.0643 0.872 Mono L1
ENSG00000162512 SDC3 3582 sc-eQTL 1.08e-03 -0.4 0.121 0.872 Mono L1
ENSG00000162517 PEF1 -732556 sc-eQTL 6.87e-01 -0.035 0.0867 0.872 Mono L1
ENSG00000168528 SERINC2 -497225 sc-eQTL 1.00e+00 -5.07e-05 0.133 0.872 Mono L1
ENSG00000284543 LINC01226 -593886 sc-eQTL 2.21e-01 -0.143 0.116 0.872 Mono L1
ENSG00000287510 AL137857.1 180647 sc-eQTL 9.75e-01 -0.00315 0.102 0.872 Mono L1
ENSG00000060688 SNRNP40 -384448 sc-eQTL 4.60e-02 -0.245 0.122 0.871 NK L1
ENSG00000121753 ADGRB2 -852553 sc-eQTL 4.69e-01 0.0769 0.106 0.871 NK L1
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 8.04e-01 0.021 0.0844 0.871 NK L1
ENSG00000134644 PUM1 -153651 sc-eQTL 5.69e-01 0.0504 0.0884 0.871 NK L1
ENSG00000162511 LAPTM5 154566 sc-eQTL 1.10e-02 0.257 0.1 0.871 NK L1
ENSG00000162517 PEF1 -732556 sc-eQTL 8.69e-01 0.0123 0.0743 0.871 NK L1
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 4.05e-01 0.0954 0.114 0.871 NK L1
ENSG00000287510 AL137857.1 180647 sc-eQTL 2.51e-01 -0.121 0.105 0.871 NK L1
ENSG00000060688 SNRNP40 -384448 sc-eQTL 3.71e-01 -0.0834 0.0931 0.872 Other_T L1
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 5.51e-01 -0.0594 0.0996 0.872 Other_T L1
ENSG00000134644 PUM1 -153651 sc-eQTL 2.73e-01 0.0982 0.0894 0.872 Other_T L1
ENSG00000162511 LAPTM5 154566 sc-eQTL 9.01e-01 0.00911 0.0734 0.872 Other_T L1
ENSG00000162517 PEF1 -732556 sc-eQTL 1.44e-01 0.143 0.0976 0.872 Other_T L1
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 7.72e-01 0.0349 0.12 0.872 Other_T L1
ENSG00000287510 AL137857.1 180647 sc-eQTL 9.69e-01 0.00484 0.125 0.872 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -384448 sc-eQTL 9.61e-01 0.00741 0.15 0.875 B_Activated L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 8.71e-01 -0.0246 0.152 0.875 B_Activated L2
ENSG00000134644 PUM1 -153651 sc-eQTL 6.91e-01 -0.056 0.141 0.875 B_Activated L2
ENSG00000162510 MATN1 188755 sc-eQTL 3.12e-01 -0.125 0.123 0.875 B_Activated L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 1.89e-01 -0.113 0.0855 0.875 B_Activated L2
ENSG00000162517 PEF1 -732556 sc-eQTL 9.37e-01 -0.0115 0.146 0.875 B_Activated L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 3.76e-05 -0.559 0.132 0.875 B_Activated L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 1.70e-01 -0.168 0.122 0.875 B_Activated L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 3.80e-01 -0.123 0.14 0.871 B_Intermediate L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 7.84e-01 -0.0319 0.117 0.871 B_Intermediate L2
ENSG00000134644 PUM1 -153651 sc-eQTL 2.14e-01 -0.137 0.11 0.871 B_Intermediate L2
ENSG00000162510 MATN1 188755 sc-eQTL 5.02e-01 -0.0769 0.114 0.871 B_Intermediate L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 8.84e-01 0.0102 0.0702 0.871 B_Intermediate L2
ENSG00000162517 PEF1 -732556 sc-eQTL 2.30e-01 -0.156 0.13 0.871 B_Intermediate L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 9.60e-01 0.00495 0.0985 0.871 B_Intermediate L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 4.77e-01 -0.0784 0.11 0.871 B_Intermediate L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 6.10e-01 0.0686 0.134 0.871 B_Memory L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 3.79e-01 -0.109 0.123 0.871 B_Memory L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.48e-01 0.00706 0.108 0.871 B_Memory L2
ENSG00000162510 MATN1 188755 sc-eQTL 4.95e-01 0.0703 0.103 0.871 B_Memory L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 1.95e-01 0.118 0.0909 0.871 B_Memory L2
ENSG00000162517 PEF1 -732556 sc-eQTL 7.43e-01 -0.04 0.122 0.871 B_Memory L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 6.98e-03 -0.28 0.103 0.871 B_Memory L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 4.06e-01 0.102 0.122 0.871 B_Memory L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 3.70e-01 -0.111 0.124 0.872 B_Naive1 L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 6.67e-01 -0.0461 0.107 0.872 B_Naive1 L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.72e-01 -0.00329 0.0946 0.872 B_Naive1 L2
ENSG00000162510 MATN1 188755 sc-eQTL 1.50e-01 0.138 0.0955 0.872 B_Naive1 L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 7.57e-01 0.0198 0.0641 0.872 B_Naive1 L2
ENSG00000162517 PEF1 -732556 sc-eQTL 1.73e-01 0.154 0.113 0.872 B_Naive1 L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 1.50e-01 0.121 0.0838 0.872 B_Naive1 L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 5.21e-01 -0.0669 0.104 0.872 B_Naive1 L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.67e-01 0.0389 0.131 0.871 B_Naive2 L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 4.31e-01 -0.0854 0.108 0.871 B_Naive2 L2
ENSG00000134644 PUM1 -153651 sc-eQTL 4.16e-01 0.0864 0.106 0.871 B_Naive2 L2
ENSG00000162510 MATN1 188755 sc-eQTL 2.34e-01 -0.121 0.102 0.871 B_Naive2 L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 7.29e-01 -0.024 0.0692 0.871 B_Naive2 L2
ENSG00000162517 PEF1 -732556 sc-eQTL 5.67e-01 -0.0721 0.126 0.871 B_Naive2 L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 9.00e-01 0.0127 0.101 0.871 B_Naive2 L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 6.23e-01 -0.0536 0.109 0.871 B_Naive2 L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 9.32e-01 0.0114 0.133 0.868 CD4_CTL L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 3.45e-01 0.124 0.131 0.868 CD4_CTL L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.01e-01 0.016 0.129 0.868 CD4_CTL L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 7.24e-01 -0.0405 0.115 0.868 CD4_CTL L2
ENSG00000162517 PEF1 -732556 sc-eQTL 9.83e-01 0.00251 0.118 0.868 CD4_CTL L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 8.46e-01 0.0244 0.125 0.868 CD4_CTL L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 9.43e-01 0.00787 0.111 0.868 CD4_CTL L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 2.25e-01 -0.124 0.102 0.872 CD4_Naive L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 2.06e-01 0.115 0.0903 0.872 CD4_Naive L2
ENSG00000134644 PUM1 -153651 sc-eQTL 2.02e-02 0.167 0.0715 0.872 CD4_Naive L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 3.33e-01 -0.0751 0.0774 0.872 CD4_Naive L2
ENSG00000162517 PEF1 -732556 sc-eQTL 1.40e-01 -0.125 0.0847 0.872 CD4_Naive L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 5.27e-01 -0.0499 0.0787 0.872 CD4_Naive L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 8.33e-01 -0.0191 0.0904 0.872 CD4_Naive L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 2.18e-01 0.157 0.127 0.872 CD4_TCM L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 1.43e-01 0.151 0.103 0.872 CD4_TCM L2
ENSG00000134644 PUM1 -153651 sc-eQTL 5.09e-01 0.0603 0.0911 0.872 CD4_TCM L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 4.12e-01 0.0622 0.0756 0.872 CD4_TCM L2
ENSG00000162517 PEF1 -732556 sc-eQTL 6.46e-01 0.0466 0.101 0.872 CD4_TCM L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 1.32e-01 0.145 0.0955 0.872 CD4_TCM L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 1.99e-01 -0.137 0.107 0.872 CD4_TCM L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 5.97e-01 0.0671 0.127 0.872 CD4_TEM L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 5.39e-01 0.0743 0.121 0.872 CD4_TEM L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.38e-01 0.00785 0.101 0.872 CD4_TEM L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 6.65e-01 0.0441 0.102 0.872 CD4_TEM L2
ENSG00000162517 PEF1 -732556 sc-eQTL 1.12e-01 0.181 0.113 0.872 CD4_TEM L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 1.85e-01 -0.158 0.119 0.872 CD4_TEM L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 6.48e-01 0.0536 0.117 0.872 CD4_TEM L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 1.73e-01 -0.199 0.146 0.872 CD8_CTL L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 8.89e-01 -0.0157 0.112 0.872 CD8_CTL L2
ENSG00000134644 PUM1 -153651 sc-eQTL 8.03e-02 0.19 0.108 0.872 CD8_CTL L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 2.21e-01 0.148 0.12 0.872 CD8_CTL L2
ENSG00000162517 PEF1 -732556 sc-eQTL 8.52e-01 0.0196 0.105 0.872 CD8_CTL L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 2.73e-01 0.139 0.126 0.872 CD8_CTL L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 8.34e-01 0.025 0.119 0.872 CD8_CTL L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 3.52e-01 0.117 0.126 0.872 CD8_Naive L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 3.71e-01 0.0973 0.109 0.872 CD8_Naive L2
ENSG00000134644 PUM1 -153651 sc-eQTL 2.22e-01 0.107 0.0872 0.872 CD8_Naive L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 9.25e-01 -0.0079 0.0838 0.872 CD8_Naive L2
ENSG00000162517 PEF1 -732556 sc-eQTL 3.15e-01 -0.117 0.116 0.872 CD8_Naive L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 4.64e-01 -0.0766 0.105 0.872 CD8_Naive L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 8.46e-01 -0.0221 0.114 0.872 CD8_Naive L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.89e-01 0.0374 0.139 0.866 CD8_TCM L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 7.73e-01 0.0368 0.128 0.866 CD8_TCM L2
ENSG00000134644 PUM1 -153651 sc-eQTL 1.33e-01 0.18 0.119 0.866 CD8_TCM L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 3.44e-01 0.119 0.125 0.866 CD8_TCM L2
ENSG00000162517 PEF1 -732556 sc-eQTL 7.61e-01 -0.039 0.128 0.866 CD8_TCM L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 8.59e-01 0.0206 0.116 0.866 CD8_TCM L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 5.70e-02 0.223 0.116 0.866 CD8_TCM L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 6.34e-01 -0.0655 0.137 0.874 CD8_TEM L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 4.12e-02 -0.268 0.13 0.874 CD8_TEM L2
ENSG00000134644 PUM1 -153651 sc-eQTL 4.21e-01 -0.109 0.135 0.874 CD8_TEM L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 2.78e-01 -0.137 0.126 0.874 CD8_TEM L2
ENSG00000162517 PEF1 -732556 sc-eQTL 1.89e-01 -0.157 0.119 0.874 CD8_TEM L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 4.08e-01 0.109 0.131 0.874 CD8_TEM L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 2.36e-01 -0.141 0.119 0.874 CD8_TEM L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 6.83e-02 -0.244 0.133 0.87 MAIT L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 6.76e-01 -0.0498 0.119 0.87 MAIT L2
ENSG00000134644 PUM1 -153651 sc-eQTL 1.13e-01 0.181 0.113 0.87 MAIT L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 5.98e-01 -0.0567 0.108 0.87 MAIT L2
ENSG00000162517 PEF1 -732556 sc-eQTL 8.48e-01 -0.0227 0.118 0.87 MAIT L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 2.91e-01 0.127 0.12 0.87 MAIT L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 5.65e-01 0.0712 0.123 0.87 MAIT L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 5.34e-01 -0.0861 0.138 0.871 NK_CD56bright L2
ENSG00000121753 ADGRB2 -852553 sc-eQTL 1.67e-01 -0.149 0.108 0.871 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 5.54e-01 -0.0691 0.117 0.871 NK_CD56bright L2
ENSG00000134644 PUM1 -153651 sc-eQTL 1.54e-01 -0.175 0.122 0.871 NK_CD56bright L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 7.72e-01 0.0351 0.121 0.871 NK_CD56bright L2
ENSG00000162517 PEF1 -732556 sc-eQTL 6.62e-01 0.0514 0.117 0.871 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 1.85e-01 0.161 0.121 0.871 NK_CD56bright L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 8.56e-01 -0.0217 0.12 0.871 NK_CD56bright L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 3.28e-01 -0.127 0.13 0.871 NK_CD56dim L2
ENSG00000121753 ADGRB2 -852553 sc-eQTL 5.54e-01 0.0678 0.114 0.871 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 5.17e-01 0.0625 0.0962 0.871 NK_CD56dim L2
ENSG00000134644 PUM1 -153651 sc-eQTL 8.23e-01 0.0222 0.0988 0.871 NK_CD56dim L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 4.62e-02 0.209 0.104 0.871 NK_CD56dim L2
ENSG00000162517 PEF1 -732556 sc-eQTL 9.76e-01 -0.00286 0.0938 0.871 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 8.95e-01 0.0174 0.132 0.871 NK_CD56dim L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 9.47e-02 -0.182 0.108 0.871 NK_CD56dim L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 2.15e-01 -0.178 0.143 0.877 NK_HLA L2
ENSG00000121753 ADGRB2 -852553 sc-eQTL 8.02e-01 0.0286 0.114 0.877 NK_HLA L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 8.38e-01 0.0261 0.128 0.877 NK_HLA L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.32e-01 -0.0106 0.125 0.877 NK_HLA L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 2.17e-01 0.147 0.119 0.877 NK_HLA L2
ENSG00000162517 PEF1 -732556 sc-eQTL 5.54e-01 0.0793 0.134 0.877 NK_HLA L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 7.06e-01 0.0477 0.127 0.877 NK_HLA L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 7.23e-01 0.0434 0.122 0.877 NK_HLA L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 2.60e-01 -0.144 0.127 0.871 NK_cytokine L2
ENSG00000121753 ADGRB2 -852553 sc-eQTL 5.01e-01 0.0774 0.115 0.871 NK_cytokine L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 8.62e-01 0.0174 0.0994 0.871 NK_cytokine L2
ENSG00000134644 PUM1 -153651 sc-eQTL 3.60e-01 0.0983 0.107 0.871 NK_cytokine L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 1.63e-01 0.165 0.118 0.871 NK_cytokine L2
ENSG00000162517 PEF1 -732556 sc-eQTL 4.94e-01 0.0689 0.101 0.871 NK_cytokine L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 6.93e-01 0.0495 0.125 0.871 NK_cytokine L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 7.80e-01 0.0326 0.117 0.871 NK_cytokine L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 1.96e-01 -0.189 0.145 0.878 PB L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 6.05e-01 -0.0881 0.17 0.878 PB L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.35e-01 0.0121 0.148 0.878 PB L2
ENSG00000162510 MATN1 188755 sc-eQTL 4.06e-01 -0.114 0.137 0.878 PB L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 4.42e-01 0.0757 0.0981 0.878 PB L2
ENSG00000162517 PEF1 -732556 sc-eQTL 6.73e-02 -0.276 0.149 0.878 PB L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 4.92e-01 -0.0925 0.134 0.878 PB L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 6.22e-01 0.0707 0.143 0.878 PB L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 9.86e-01 -0.00172 0.101 0.872 Pro_T L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 9.33e-01 0.0109 0.128 0.872 Pro_T L2
ENSG00000134644 PUM1 -153651 sc-eQTL 5.71e-01 0.0679 0.12 0.872 Pro_T L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 1.48e-01 -0.124 0.0855 0.872 Pro_T L2
ENSG00000162517 PEF1 -732556 sc-eQTL 4.53e-02 -0.251 0.125 0.872 Pro_T L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 5.09e-01 -0.0793 0.12 0.872 Pro_T L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 8.78e-01 -0.0169 0.11 0.872 Pro_T L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 6.89e-01 0.0524 0.131 0.872 Treg L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 8.55e-01 0.0231 0.127 0.872 Treg L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.13e-01 0.0111 0.101 0.872 Treg L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 8.73e-01 -0.0185 0.116 0.872 Treg L2
ENSG00000162517 PEF1 -732556 sc-eQTL 1.17e-01 -0.196 0.125 0.872 Treg L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 5.26e-01 0.075 0.118 0.872 Treg L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 4.46e-01 -0.09 0.118 0.872 Treg L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.51e-01 0.0427 0.135 0.876 cDC L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 5.77e-01 -0.0813 0.146 0.876 cDC L2
ENSG00000134644 PUM1 -153651 sc-eQTL 7.96e-01 0.0324 0.125 0.876 cDC L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 5.95e-01 -0.0467 0.0876 0.876 cDC L2
ENSG00000162517 PEF1 -732556 sc-eQTL 5.86e-01 0.0692 0.127 0.876 cDC L2
ENSG00000168528 SERINC2 -497225 sc-eQTL 4.95e-01 0.077 0.112 0.876 cDC L2
ENSG00000284543 LINC01226 -593886 sc-eQTL 3.88e-01 -0.0956 0.11 0.876 cDC L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 8.61e-01 -0.0209 0.119 0.876 cDC L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 8.59e-02 -0.183 0.106 0.872 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 6.24e-01 0.0585 0.119 0.872 cMono_IL1B L2
ENSG00000134644 PUM1 -153651 sc-eQTL 6.76e-01 -0.0338 0.0805 0.872 cMono_IL1B L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 5.92e-01 0.0379 0.0707 0.872 cMono_IL1B L2
ENSG00000162512 SDC3 3582 sc-eQTL 2.47e-02 -0.298 0.132 0.872 cMono_IL1B L2
ENSG00000162517 PEF1 -732556 sc-eQTL 3.69e-01 -0.0979 0.109 0.872 cMono_IL1B L2
ENSG00000168528 SERINC2 -497225 sc-eQTL 9.75e-01 0.0042 0.135 0.872 cMono_IL1B L2
ENSG00000284543 LINC01226 -593886 sc-eQTL 5.03e-01 -0.0799 0.119 0.872 cMono_IL1B L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 6.67e-01 0.0479 0.111 0.872 cMono_IL1B L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 2.74e-01 0.122 0.111 0.872 cMono_S100A L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 9.03e-01 0.0161 0.132 0.872 cMono_S100A L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.12e-01 -0.0106 0.0953 0.872 cMono_S100A L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 6.84e-01 0.0299 0.0732 0.872 cMono_S100A L2
ENSG00000162512 SDC3 3582 sc-eQTL 6.46e-02 -0.233 0.125 0.872 cMono_S100A L2
ENSG00000162517 PEF1 -732556 sc-eQTL 8.16e-01 -0.0265 0.114 0.872 cMono_S100A L2
ENSG00000168528 SERINC2 -497225 sc-eQTL 6.54e-01 -0.0601 0.134 0.872 cMono_S100A L2
ENSG00000284543 LINC01226 -593886 sc-eQTL 1.09e-01 -0.174 0.108 0.872 cMono_S100A L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 9.83e-01 -0.00237 0.109 0.872 cMono_S100A L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.56e-01 -0.0496 0.159 0.858 gdT L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 6.31e-01 -0.0658 0.137 0.858 gdT L2
ENSG00000134644 PUM1 -153651 sc-eQTL 2.16e-01 -0.175 0.14 0.858 gdT L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 8.19e-01 0.0352 0.153 0.858 gdT L2
ENSG00000162517 PEF1 -732556 sc-eQTL 3.01e-02 0.302 0.138 0.858 gdT L2
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 9.40e-01 0.0108 0.142 0.858 gdT L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 5.51e-01 0.0819 0.137 0.858 gdT L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 6.07e-01 0.0639 0.124 0.876 intMono L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 1.99e-01 -0.171 0.133 0.876 intMono L2
ENSG00000134644 PUM1 -153651 sc-eQTL 6.25e-01 -0.0553 0.113 0.876 intMono L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 8.88e-02 0.151 0.0882 0.876 intMono L2
ENSG00000162512 SDC3 3582 sc-eQTL 9.39e-02 -0.203 0.121 0.876 intMono L2
ENSG00000162517 PEF1 -732556 sc-eQTL 6.87e-01 0.0515 0.128 0.876 intMono L2
ENSG00000168528 SERINC2 -497225 sc-eQTL 7.82e-01 -0.0352 0.127 0.876 intMono L2
ENSG00000284543 LINC01226 -593886 sc-eQTL 7.92e-01 -0.0318 0.121 0.876 intMono L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 9.90e-01 -0.00151 0.121 0.876 intMono L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 9.42e-01 0.00832 0.114 0.871 ncMono L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 7.96e-01 -0.0315 0.122 0.871 ncMono L2
ENSG00000134644 PUM1 -153651 sc-eQTL 9.00e-02 -0.168 0.0988 0.871 ncMono L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 5.42e-01 0.0552 0.0903 0.871 ncMono L2
ENSG00000162512 SDC3 3582 sc-eQTL 1.68e-01 -0.14 0.101 0.871 ncMono L2
ENSG00000162517 PEF1 -732556 sc-eQTL 5.12e-01 -0.0763 0.116 0.871 ncMono L2
ENSG00000168528 SERINC2 -497225 sc-eQTL 9.35e-01 -0.00903 0.111 0.871 ncMono L2
ENSG00000284543 LINC01226 -593886 sc-eQTL 7.92e-01 0.0291 0.11 0.871 ncMono L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 6.01e-01 -0.06 0.114 0.871 ncMono L2
ENSG00000060688 SNRNP40 -384448 sc-eQTL 3.15e-01 -0.137 0.136 0.864 pDC L2
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 7.47e-01 -0.0485 0.15 0.864 pDC L2
ENSG00000134644 PUM1 -153651 sc-eQTL 7.49e-01 0.0398 0.124 0.864 pDC L2
ENSG00000162511 LAPTM5 154566 sc-eQTL 3.43e-02 0.243 0.114 0.864 pDC L2
ENSG00000162517 PEF1 -732556 sc-eQTL 6.01e-01 0.0785 0.15 0.864 pDC L2
ENSG00000168528 SERINC2 -497225 sc-eQTL 2.44e-01 0.163 0.139 0.864 pDC L2
ENSG00000284543 LINC01226 -593886 sc-eQTL 1.37e-01 0.161 0.108 0.864 pDC L2
ENSG00000287510 AL137857.1 180647 sc-eQTL 5.66e-01 0.0735 0.128 0.864 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -384448 sc-eQTL 5.65e-01 -0.0781 0.135 0.872 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 2.62e-01 -0.127 0.112 0.872 B_Memory LOneK1K
ENSG00000134644 PUM1 -153651 sc-eQTL 1.60e-01 -0.14 0.0995 0.872 B_Memory LOneK1K
ENSG00000162510 MATN1 188755 sc-eQTL 9.08e-01 0.0132 0.114 0.872 B_Memory LOneK1K
ENSG00000162511 LAPTM5 154566 sc-eQTL 9.21e-01 0.00715 0.0716 0.872 B_Memory LOneK1K
ENSG00000162517 PEF1 -732556 sc-eQTL 5.84e-01 -0.065 0.119 0.872 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 9.23e-03 -0.245 0.0932 0.872 B_Memory LOneK1K
ENSG00000287510 AL137857.1 180647 sc-eQTL 9.65e-02 -0.171 0.103 0.872 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.64e-01 -0.0363 0.121 0.872 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 3.76e-01 -0.0844 0.0953 0.872 B_Naive LOneK1K
ENSG00000134644 PUM1 -153651 sc-eQTL 8.95e-01 0.0119 0.0903 0.872 B_Naive LOneK1K
ENSG00000162510 MATN1 188755 sc-eQTL 3.47e-01 0.0818 0.0868 0.872 B_Naive LOneK1K
ENSG00000162511 LAPTM5 154566 sc-eQTL 9.60e-01 0.00305 0.0612 0.872 B_Naive LOneK1K
ENSG00000162517 PEF1 -732556 sc-eQTL 2.96e-01 0.117 0.111 0.872 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 1.82e-01 0.105 0.0787 0.872 B_Naive LOneK1K
ENSG00000287510 AL137857.1 180647 sc-eQTL 8.70e-01 -0.0154 0.0939 0.872 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.74e-01 -0.0291 0.101 0.872 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 5.11e-01 0.0756 0.115 0.872 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -153651 sc-eQTL 7.28e-01 -0.0255 0.0732 0.872 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 154566 sc-eQTL 6.41e-01 0.03 0.0644 0.872 CD14_Mono LOneK1K
ENSG00000162512 SDC3 3582 sc-eQTL 5.85e-03 -0.359 0.129 0.872 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -732556 sc-eQTL 5.51e-01 -0.0551 0.0923 0.872 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -497225 sc-eQTL 8.31e-01 -0.0289 0.135 0.872 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -593886 sc-eQTL 3.85e-01 -0.0962 0.111 0.872 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 180647 sc-eQTL 7.68e-01 0.0307 0.104 0.872 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -384448 sc-eQTL 4.24e-01 0.0876 0.109 0.871 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 1.89e-01 -0.157 0.119 0.871 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -153651 sc-eQTL 1.18e-01 -0.153 0.0976 0.871 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 154566 sc-eQTL 2.79e-01 0.085 0.0783 0.871 CD16_Mono LOneK1K
ENSG00000162512 SDC3 3582 sc-eQTL 2.94e-02 -0.249 0.113 0.871 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -732556 sc-eQTL 8.72e-01 0.0168 0.104 0.871 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -497225 sc-eQTL 7.91e-01 0.0316 0.119 0.871 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -593886 sc-eQTL 9.11e-01 0.0126 0.113 0.871 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 180647 sc-eQTL 4.40e-01 -0.0872 0.113 0.871 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -384448 sc-eQTL 7.54e-02 -0.219 0.123 0.871 NK_CD56dim LOneK1K
ENSG00000121753 ADGRB2 -852553 sc-eQTL 3.47e-01 0.099 0.105 0.871 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -384642 sc-eQTL 6.72e-01 0.0359 0.0845 0.871 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -153651 sc-eQTL 3.60e-01 0.0847 0.0924 0.871 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 154566 sc-eQTL 1.88e-02 0.242 0.102 0.871 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -732556 sc-eQTL 8.09e-01 0.019 0.0786 0.871 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 193836 sc-eQTL 5.18e-01 0.0772 0.119 0.871 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 180647 sc-eQTL 2.66e-01 -0.115 0.103 0.871 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060688 SNRNP40 -384448 eQTL 0.0111 0.0627 0.0246 0.0 0.0 0.128
ENSG00000121766 ZCCHC17 -384642 eQTL 6.44e-04 0.0884 0.0258 0.0 0.0 0.128
ENSG00000162512 SDC3 3582 eQTL 5.94e-10 -0.221 0.0353 0.0 0.0 0.128
ENSG00000168528 SERINC2 -497225 eQTL 0.0159 -0.136 0.0563 0.0 0.0 0.128
ENSG00000237329 AL356320.2 -124394 eQTL 0.00763 0.136 0.0509 0.0017 0.0 0.128

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 ZCCHC17 -384642 2.67e-07 1.19e-07 4.47e-08 1.81e-07 8.83e-08 9.71e-08 1.38e-07 5.19e-08 1.41e-07 4.4e-08 1.62e-07 7.75e-08 1.3e-07 6.56e-08 5.53e-08 7.26e-08 3.87e-08 1.21e-07 5.39e-08 4.42e-08 1.22e-07 1.26e-07 1.32e-07 2.95e-08 1.33e-07 1.14e-07 1.12e-07 9.15e-08 1.02e-07 1.07e-07 9.73e-08 3.54e-08 3.3e-08 8.25e-08 8.76e-08 3.53e-08 5.8e-08 8.76e-08 6.55e-08 3.98e-08 4.18e-08 1.35e-07 1.67e-08 7.32e-09 4.67e-08 1.84e-08 1.23e-07 3.86e-09 4.81e-08
ENSG00000162512 SDC3 3582 4.62e-05 4.06e-05 7.49e-06 1.75e-05 7.46e-06 1.82e-05 5.32e-05 6.24e-06 4.29e-05 2.06e-05 5.26e-05 2.24e-05 6.36e-05 1.73e-05 8.64e-06 2.67e-05 2.28e-05 3.23e-05 1e-05 8.88e-06 2.13e-05 4.59e-05 3.76e-05 1.15e-05 5.65e-05 1.12e-05 1.88e-05 1.69e-05 3.97e-05 3.14e-05 2.65e-05 2.13e-06 3.37e-06 8.22e-06 1.4e-05 7.55e-06 3.67e-06 3.82e-06 6.16e-06 3.85e-06 1.87e-06 4.66e-05 4.49e-06 4.49e-07 3.09e-06 5.28e-06 5.11e-06 2.29e-06 1.56e-06
ENSG00000237329 AL356320.2 -124394 1.88e-06 2.53e-06 4.51e-07 1.43e-06 3.92e-07 6.22e-07 1.26e-06 4.42e-07 1.69e-06 7.34e-07 2.11e-06 1.29e-06 3.08e-06 1.34e-06 3.31e-07 1.1e-06 1.37e-06 1.72e-06 5.54e-07 6.46e-07 9.25e-07 1.92e-06 1.54e-06 1.02e-06 2.57e-06 8.82e-07 1.01e-06 1.01e-06 1.63e-06 1.84e-06 1.21e-06 2.48e-07 2.85e-07 8.72e-07 8.68e-07 7.22e-07 7.59e-07 4.29e-07 5.19e-07 1.86e-07 2.77e-07 2.92e-06 4.55e-07 1.57e-07 3.38e-07 3.46e-07 4.32e-07 2.49e-07 2.4e-07