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Genes within 1Mb (chr1:30884853:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -411935 sc-eQTL 9.27e-01 0.00785 0.0857 0.63 B L1
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 7.63e-01 -0.0207 0.0686 0.63 B L1
ENSG00000134644 PUM1 -181138 sc-eQTL 3.75e-01 -0.0511 0.0575 0.63 B L1
ENSG00000162510 MATN1 161268 sc-eQTL 6.20e-01 0.03 0.0605 0.63 B L1
ENSG00000162511 LAPTM5 127079 sc-eQTL 6.44e-01 -0.0219 0.0474 0.63 B L1
ENSG00000162517 PEF1 -760043 sc-eQTL 4.43e-01 -0.0549 0.0714 0.63 B L1
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 9.21e-01 0.00548 0.0555 0.63 B L1
ENSG00000287510 AL137857.1 153160 sc-eQTL 1.73e-01 0.0894 0.0654 0.63 B L1
ENSG00000060688 SNRNP40 -411935 sc-eQTL 2.38e-01 -0.0884 0.0747 0.63 CD4T L1
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 8.07e-01 -0.0143 0.0585 0.63 CD4T L1
ENSG00000134644 PUM1 -181138 sc-eQTL 3.66e-01 -0.0471 0.052 0.63 CD4T L1
ENSG00000162511 LAPTM5 127079 sc-eQTL 6.80e-01 0.0239 0.0577 0.63 CD4T L1
ENSG00000162517 PEF1 -760043 sc-eQTL 6.04e-01 -0.0313 0.0604 0.63 CD4T L1
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 4.32e-01 -0.0406 0.0516 0.63 CD4T L1
ENSG00000287510 AL137857.1 153160 sc-eQTL 3.90e-01 0.0532 0.0618 0.63 CD4T L1
ENSG00000060688 SNRNP40 -411935 sc-eQTL 8.18e-01 0.0229 0.0992 0.63 CD8T L1
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 4.18e-01 0.0535 0.0659 0.63 CD8T L1
ENSG00000134644 PUM1 -181138 sc-eQTL 2.90e-02 -0.126 0.0575 0.63 CD8T L1
ENSG00000162511 LAPTM5 127079 sc-eQTL 2.68e-01 0.0625 0.0563 0.63 CD8T L1
ENSG00000162517 PEF1 -760043 sc-eQTL 4.55e-01 -0.0519 0.0694 0.63 CD8T L1
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 2.04e-01 0.0839 0.0659 0.63 CD8T L1
ENSG00000287510 AL137857.1 153160 sc-eQTL 5.92e-01 0.0446 0.0831 0.63 CD8T L1
ENSG00000060688 SNRNP40 -411935 sc-eQTL 1.39e-01 -0.127 0.0856 0.631 DC L1
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 8.48e-02 -0.175 0.101 0.631 DC L1
ENSG00000134644 PUM1 -181138 sc-eQTL 8.17e-02 -0.139 0.0792 0.631 DC L1
ENSG00000162511 LAPTM5 127079 sc-eQTL 2.97e-02 0.123 0.0563 0.631 DC L1
ENSG00000162517 PEF1 -760043 sc-eQTL 8.28e-01 0.0201 0.0924 0.631 DC L1
ENSG00000168528 SERINC2 -524712 sc-eQTL 3.31e-01 0.0913 0.0938 0.631 DC L1
ENSG00000284543 LINC01226 -621373 sc-eQTL 7.54e-01 -0.0196 0.0623 0.631 DC L1
ENSG00000287510 AL137857.1 153160 sc-eQTL 1.67e-01 0.124 0.0897 0.631 DC L1
ENSG00000060688 SNRNP40 -411935 sc-eQTL 8.27e-01 -0.0146 0.0667 0.63 Mono L1
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 9.76e-01 0.00245 0.0827 0.63 Mono L1
ENSG00000134644 PUM1 -181138 sc-eQTL 2.44e-01 0.0618 0.0528 0.63 Mono L1
ENSG00000162511 LAPTM5 127079 sc-eQTL 6.80e-01 0.0201 0.0487 0.63 Mono L1
ENSG00000162512 SDC3 -23905 sc-eQTL 2.37e-01 -0.111 0.0934 0.63 Mono L1
ENSG00000162517 PEF1 -760043 sc-eQTL 7.49e-01 -0.0211 0.0657 0.63 Mono L1
ENSG00000168528 SERINC2 -524712 sc-eQTL 2.63e-01 0.112 0.1 0.63 Mono L1
ENSG00000284543 LINC01226 -621373 sc-eQTL 7.76e-01 -0.0252 0.0886 0.63 Mono L1
ENSG00000287510 AL137857.1 153160 sc-eQTL 9.00e-01 0.00975 0.0774 0.63 Mono L1
ENSG00000060688 SNRNP40 -411935 sc-eQTL 4.86e-01 0.0655 0.0937 0.631 NK L1
ENSG00000121753 ADGRB2 -880040 sc-eQTL 8.59e-01 -0.0144 0.0808 0.631 NK L1
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 1.44e-02 -0.156 0.0633 0.631 NK L1
ENSG00000134644 PUM1 -181138 sc-eQTL 7.17e-01 -0.0244 0.0674 0.631 NK L1
ENSG00000162511 LAPTM5 127079 sc-eQTL 3.50e-01 0.0725 0.0774 0.631 NK L1
ENSG00000162517 PEF1 -760043 sc-eQTL 8.69e-02 0.0967 0.0562 0.631 NK L1
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 3.28e-01 0.0852 0.0869 0.631 NK L1
ENSG00000287510 AL137857.1 153160 sc-eQTL 1.55e-02 0.194 0.0793 0.631 NK L1
ENSG00000060688 SNRNP40 -411935 sc-eQTL 9.63e-01 0.00326 0.0704 0.63 Other_T L1
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 1.03e-01 -0.123 0.0748 0.63 Other_T L1
ENSG00000134644 PUM1 -181138 sc-eQTL 8.77e-01 0.0105 0.0677 0.63 Other_T L1
ENSG00000162511 LAPTM5 127079 sc-eQTL 8.56e-01 -0.0101 0.0555 0.63 Other_T L1
ENSG00000162517 PEF1 -760043 sc-eQTL 4.70e-01 0.0536 0.074 0.63 Other_T L1
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 9.31e-01 0.00786 0.0908 0.63 Other_T L1
ENSG00000287510 AL137857.1 153160 sc-eQTL 8.21e-01 -0.0214 0.0946 0.63 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -411935 sc-eQTL 9.64e-01 0.00525 0.115 0.617 B_Activated L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 6.99e-01 -0.0447 0.115 0.617 B_Activated L2
ENSG00000134644 PUM1 -181138 sc-eQTL 9.39e-02 -0.179 0.106 0.617 B_Activated L2
ENSG00000162510 MATN1 161268 sc-eQTL 6.57e-01 -0.0417 0.0938 0.617 B_Activated L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 8.20e-01 0.0149 0.0654 0.617 B_Activated L2
ENSG00000162517 PEF1 -760043 sc-eQTL 9.19e-01 0.0114 0.111 0.617 B_Activated L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 9.50e-01 -0.00667 0.106 0.617 B_Activated L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 9.98e-01 0.000222 0.0935 0.617 B_Activated L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 9.31e-01 -0.00913 0.105 0.631 B_Intermediate L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 1.43e-01 -0.128 0.0869 0.631 B_Intermediate L2
ENSG00000134644 PUM1 -181138 sc-eQTL 7.89e-01 0.0221 0.0824 0.631 B_Intermediate L2
ENSG00000162510 MATN1 161268 sc-eQTL 3.85e-01 -0.0746 0.0856 0.631 B_Intermediate L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 1.89e-01 -0.0691 0.0524 0.631 B_Intermediate L2
ENSG00000162517 PEF1 -760043 sc-eQTL 7.78e-01 -0.0276 0.0977 0.631 B_Intermediate L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 7.45e-01 -0.024 0.0739 0.631 B_Intermediate L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 8.38e-02 0.143 0.0821 0.631 B_Intermediate L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 1.10e-01 -0.163 0.102 0.629 B_Memory L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 6.38e-01 0.0445 0.0943 0.629 B_Memory L2
ENSG00000134644 PUM1 -181138 sc-eQTL 7.26e-01 -0.0288 0.0821 0.629 B_Memory L2
ENSG00000162510 MATN1 161268 sc-eQTL 8.69e-01 -0.013 0.0786 0.629 B_Memory L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 1.35e-01 -0.104 0.0693 0.629 B_Memory L2
ENSG00000162517 PEF1 -760043 sc-eQTL 8.72e-01 -0.015 0.093 0.629 B_Memory L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 9.81e-01 -0.00191 0.0797 0.629 B_Memory L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 3.67e-01 0.0842 0.0931 0.629 B_Memory L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 2.62e-01 0.105 0.0934 0.63 B_Naive1 L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 7.56e-01 -0.0251 0.0809 0.63 B_Naive1 L2
ENSG00000134644 PUM1 -181138 sc-eQTL 4.00e-01 -0.0601 0.0712 0.63 B_Naive1 L2
ENSG00000162510 MATN1 161268 sc-eQTL 1.86e-01 0.0957 0.0721 0.63 B_Naive1 L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 9.84e-01 0.001 0.0484 0.63 B_Naive1 L2
ENSG00000162517 PEF1 -760043 sc-eQTL 7.68e-01 0.0252 0.0853 0.63 B_Naive1 L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 9.85e-01 0.00119 0.0635 0.63 B_Naive1 L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 3.62e-01 0.0715 0.0783 0.63 B_Naive1 L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 5.11e-01 -0.065 0.0987 0.631 B_Naive2 L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 3.79e-01 0.0719 0.0814 0.631 B_Naive2 L2
ENSG00000134644 PUM1 -181138 sc-eQTL 6.22e-01 -0.0394 0.0798 0.631 B_Naive2 L2
ENSG00000162510 MATN1 161268 sc-eQTL 1.51e-01 0.11 0.0763 0.631 B_Naive2 L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 6.48e-01 -0.0238 0.052 0.631 B_Naive2 L2
ENSG00000162517 PEF1 -760043 sc-eQTL 4.36e-01 -0.0737 0.0946 0.631 B_Naive2 L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 4.24e-01 0.0607 0.0757 0.631 B_Naive2 L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 5.36e-01 0.0507 0.0818 0.631 B_Naive2 L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 8.52e-01 -0.0187 0.1 0.63 CD4_CTL L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 5.05e-01 -0.0658 0.0984 0.63 CD4_CTL L2
ENSG00000134644 PUM1 -181138 sc-eQTL 6.92e-01 -0.0383 0.0966 0.63 CD4_CTL L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 8.02e-01 -0.0216 0.0861 0.63 CD4_CTL L2
ENSG00000162517 PEF1 -760043 sc-eQTL 1.44e-01 -0.129 0.0878 0.63 CD4_CTL L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 8.99e-02 -0.159 0.0935 0.63 CD4_CTL L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 9.20e-01 0.00836 0.0831 0.63 CD4_CTL L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 1.35e-01 -0.117 0.0776 0.63 CD4_Naive L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 9.38e-01 0.00536 0.0692 0.63 CD4_Naive L2
ENSG00000134644 PUM1 -181138 sc-eQTL 2.44e-01 -0.0644 0.0551 0.63 CD4_Naive L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 4.49e-01 0.0448 0.0591 0.63 CD4_Naive L2
ENSG00000162517 PEF1 -760043 sc-eQTL 5.51e-01 -0.0388 0.0649 0.63 CD4_Naive L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 6.92e-01 -0.0239 0.0601 0.63 CD4_Naive L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 9.76e-01 0.00205 0.069 0.63 CD4_Naive L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 8.56e-01 -0.0182 0.1 0.63 CD4_TCM L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 6.43e-01 -0.0375 0.0807 0.63 CD4_TCM L2
ENSG00000134644 PUM1 -181138 sc-eQTL 3.15e-01 0.0718 0.0713 0.63 CD4_TCM L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 9.82e-01 0.00135 0.0593 0.63 CD4_TCM L2
ENSG00000162517 PEF1 -760043 sc-eQTL 4.42e-01 0.0612 0.0794 0.63 CD4_TCM L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 4.07e-01 -0.0624 0.0751 0.63 CD4_TCM L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 1.92e-01 0.109 0.0835 0.63 CD4_TCM L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 7.28e-01 0.0341 0.098 0.63 CD4_TEM L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 3.76e-01 -0.0826 0.0932 0.63 CD4_TEM L2
ENSG00000134644 PUM1 -181138 sc-eQTL 9.45e-01 0.00536 0.0778 0.63 CD4_TEM L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 3.66e-01 0.0712 0.0785 0.63 CD4_TEM L2
ENSG00000162517 PEF1 -760043 sc-eQTL 2.37e-01 -0.104 0.0878 0.63 CD4_TEM L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 7.51e-01 0.0293 0.092 0.63 CD4_TEM L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 5.74e-01 0.0511 0.0906 0.63 CD4_TEM L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 3.78e-01 0.0941 0.107 0.63 CD8_CTL L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 3.03e-01 0.0844 0.0817 0.63 CD8_CTL L2
ENSG00000134644 PUM1 -181138 sc-eQTL 2.88e-01 -0.0846 0.0793 0.63 CD8_CTL L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 5.96e-01 0.0468 0.0881 0.63 CD8_CTL L2
ENSG00000162517 PEF1 -760043 sc-eQTL 3.70e-01 -0.0688 0.0766 0.63 CD8_CTL L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 4.29e-01 0.0732 0.0925 0.63 CD8_CTL L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 8.89e-01 0.0122 0.0871 0.63 CD8_CTL L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 8.41e-01 -0.0197 0.098 0.63 CD8_Naive L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 9.24e-01 -0.00806 0.0845 0.63 CD8_Naive L2
ENSG00000134644 PUM1 -181138 sc-eQTL 1.28e-01 -0.103 0.0676 0.63 CD8_Naive L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 9.87e-01 -0.00103 0.0652 0.63 CD8_Naive L2
ENSG00000162517 PEF1 -760043 sc-eQTL 6.90e-01 0.0362 0.0906 0.63 CD8_Naive L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 5.27e-01 0.0515 0.0813 0.63 CD8_Naive L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 9.05e-01 0.0105 0.0886 0.63 CD8_Naive L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 5.75e-01 -0.0613 0.109 0.637 CD8_TCM L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 9.79e-02 0.165 0.0993 0.637 CD8_TCM L2
ENSG00000134644 PUM1 -181138 sc-eQTL 8.60e-01 0.0166 0.094 0.637 CD8_TCM L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 2.68e-01 0.109 0.0981 0.637 CD8_TCM L2
ENSG00000162517 PEF1 -760043 sc-eQTL 2.64e-01 -0.112 0.1 0.637 CD8_TCM L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 7.26e-01 0.032 0.0911 0.637 CD8_TCM L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 8.37e-01 0.019 0.0921 0.637 CD8_TCM L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 2.46e-01 -0.12 0.103 0.63 CD8_TEM L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 1.19e-01 -0.154 0.0982 0.63 CD8_TEM L2
ENSG00000134644 PUM1 -181138 sc-eQTL 9.61e-01 0.00495 0.101 0.63 CD8_TEM L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 8.63e-01 -0.0164 0.095 0.63 CD8_TEM L2
ENSG00000162517 PEF1 -760043 sc-eQTL 8.53e-01 -0.0166 0.0895 0.63 CD8_TEM L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 2.96e-01 0.103 0.0983 0.63 CD8_TEM L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 7.90e-01 -0.0238 0.0892 0.63 CD8_TEM L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 5.02e-01 -0.0693 0.103 0.63 MAIT L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 7.80e-01 -0.0255 0.0913 0.63 MAIT L2
ENSG00000134644 PUM1 -181138 sc-eQTL 7.30e-01 -0.0302 0.0875 0.63 MAIT L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 8.46e-01 0.016 0.0825 0.63 MAIT L2
ENSG00000162517 PEF1 -760043 sc-eQTL 8.01e-01 -0.0229 0.0907 0.63 MAIT L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 9.67e-02 0.152 0.0913 0.63 MAIT L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 4.03e-01 -0.0792 0.0946 0.63 MAIT L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 8.96e-01 0.0138 0.106 0.624 NK_CD56bright L2
ENSG00000121753 ADGRB2 -880040 sc-eQTL 4.42e-01 -0.0637 0.0826 0.624 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 3.60e-02 -0.186 0.0883 0.624 NK_CD56bright L2
ENSG00000134644 PUM1 -181138 sc-eQTL 6.01e-02 0.176 0.0929 0.624 NK_CD56bright L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 7.78e-01 0.0262 0.0924 0.624 NK_CD56bright L2
ENSG00000162517 PEF1 -760043 sc-eQTL 6.62e-01 0.0393 0.0898 0.624 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 6.95e-01 -0.0365 0.0929 0.624 NK_CD56bright L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 3.47e-01 -0.0861 0.0913 0.624 NK_CD56bright L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 4.98e-01 -0.0668 0.0984 0.631 NK_CD56dim L2
ENSG00000121753 ADGRB2 -880040 sc-eQTL 7.64e-01 -0.026 0.0867 0.631 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 2.31e-01 -0.0871 0.0726 0.631 NK_CD56dim L2
ENSG00000134644 PUM1 -181138 sc-eQTL 6.31e-01 -0.036 0.0747 0.631 NK_CD56dim L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 4.97e-01 0.0542 0.0796 0.631 NK_CD56dim L2
ENSG00000162517 PEF1 -760043 sc-eQTL 6.29e-02 0.132 0.0703 0.631 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 6.48e-01 0.0457 0.0998 0.631 NK_CD56dim L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 1.39e-02 0.201 0.0812 0.631 NK_CD56dim L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 7.44e-01 -0.0345 0.105 0.621 NK_HLA L2
ENSG00000121753 ADGRB2 -880040 sc-eQTL 8.73e-01 -0.0134 0.0837 0.621 NK_HLA L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 1.54e-01 -0.134 0.0936 0.621 NK_HLA L2
ENSG00000134644 PUM1 -181138 sc-eQTL 3.47e-01 -0.0862 0.0915 0.621 NK_HLA L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 7.13e-01 0.0323 0.0875 0.621 NK_HLA L2
ENSG00000162517 PEF1 -760043 sc-eQTL 8.66e-02 -0.169 0.0978 0.621 NK_HLA L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 3.00e-01 0.0964 0.0928 0.621 NK_HLA L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 2.22e-04 0.327 0.0869 0.621 NK_HLA L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 8.29e-02 0.167 0.0961 0.631 NK_cytokine L2
ENSG00000121753 ADGRB2 -880040 sc-eQTL 7.95e-01 0.0227 0.0874 0.631 NK_cytokine L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 2.31e-01 -0.0904 0.0753 0.631 NK_cytokine L2
ENSG00000134644 PUM1 -181138 sc-eQTL 1.84e-01 -0.108 0.0813 0.631 NK_cytokine L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 8.32e-01 0.0191 0.0899 0.631 NK_cytokine L2
ENSG00000162517 PEF1 -760043 sc-eQTL 9.27e-01 -0.00702 0.0766 0.631 NK_cytokine L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 7.74e-01 0.0274 0.0953 0.631 NK_cytokine L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 1.70e-01 0.122 0.0883 0.631 NK_cytokine L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 3.52e-01 0.106 0.113 0.633 PB L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 3.62e-01 -0.12 0.131 0.633 PB L2
ENSG00000134644 PUM1 -181138 sc-eQTL 5.04e-01 -0.0767 0.114 0.633 PB L2
ENSG00000162510 MATN1 161268 sc-eQTL 7.82e-01 -0.0296 0.107 0.633 PB L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 7.17e-01 0.0278 0.0763 0.633 PB L2
ENSG00000162517 PEF1 -760043 sc-eQTL 1.38e-01 0.174 0.116 0.633 PB L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 7.08e-01 0.0392 0.104 0.633 PB L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 4.55e-01 -0.0831 0.111 0.633 PB L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 4.29e-01 0.0601 0.0759 0.628 Pro_T L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 1.56e-01 -0.137 0.096 0.628 Pro_T L2
ENSG00000134644 PUM1 -181138 sc-eQTL 2.74e-01 0.0984 0.0897 0.628 Pro_T L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 6.89e-01 -0.0258 0.0645 0.628 Pro_T L2
ENSG00000162517 PEF1 -760043 sc-eQTL 1.24e-01 -0.145 0.0942 0.628 Pro_T L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 2.92e-03 -0.266 0.0883 0.628 Pro_T L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 5.93e-01 0.0444 0.0829 0.628 Pro_T L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 6.29e-01 0.0491 0.101 0.63 Treg L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 7.33e-01 -0.0336 0.0981 0.63 Treg L2
ENSG00000134644 PUM1 -181138 sc-eQTL 4.23e-01 -0.063 0.0784 0.63 Treg L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 9.44e-01 -0.00629 0.0899 0.63 Treg L2
ENSG00000162517 PEF1 -760043 sc-eQTL 8.42e-01 0.0193 0.0971 0.63 Treg L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 2.44e-01 0.107 0.0913 0.63 Treg L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 9.10e-01 0.0104 0.0915 0.63 Treg L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 4.38e-01 -0.0784 0.101 0.634 cDC L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 9.05e-01 -0.0131 0.11 0.634 cDC L2
ENSG00000134644 PUM1 -181138 sc-eQTL 2.83e-01 -0.101 0.0938 0.634 cDC L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 3.85e-01 0.0573 0.0658 0.634 cDC L2
ENSG00000162517 PEF1 -760043 sc-eQTL 7.71e-01 0.0278 0.0955 0.634 cDC L2
ENSG00000168528 SERINC2 -524712 sc-eQTL 2.96e-01 0.0885 0.0844 0.634 cDC L2
ENSG00000284543 LINC01226 -621373 sc-eQTL 1.11e-01 -0.132 0.0826 0.634 cDC L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 7.25e-03 0.238 0.0878 0.634 cDC L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 6.95e-01 0.0315 0.08 0.63 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 4.16e-01 -0.0726 0.0892 0.63 cMono_IL1B L2
ENSG00000134644 PUM1 -181138 sc-eQTL 2.28e-01 0.0729 0.0602 0.63 cMono_IL1B L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 4.17e-01 0.0431 0.053 0.63 cMono_IL1B L2
ENSG00000162512 SDC3 -23905 sc-eQTL 2.40e-01 -0.117 0.0996 0.63 cMono_IL1B L2
ENSG00000162517 PEF1 -760043 sc-eQTL 6.76e-01 -0.0341 0.0816 0.63 cMono_IL1B L2
ENSG00000168528 SERINC2 -524712 sc-eQTL 1.84e-01 0.134 0.101 0.63 cMono_IL1B L2
ENSG00000284543 LINC01226 -621373 sc-eQTL 6.79e-01 -0.0371 0.0894 0.63 cMono_IL1B L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 4.48e-02 0.167 0.0826 0.63 cMono_IL1B L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 9.94e-01 -0.000661 0.0842 0.63 cMono_S100A L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 5.91e-01 0.0535 0.0994 0.63 cMono_S100A L2
ENSG00000134644 PUM1 -181138 sc-eQTL 7.41e-02 0.128 0.0714 0.63 cMono_S100A L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 9.79e-01 -0.00149 0.0553 0.63 cMono_S100A L2
ENSG00000162512 SDC3 -23905 sc-eQTL 8.83e-01 -0.0141 0.0955 0.63 cMono_S100A L2
ENSG00000162517 PEF1 -760043 sc-eQTL 5.21e-01 -0.0554 0.0861 0.63 cMono_S100A L2
ENSG00000168528 SERINC2 -524712 sc-eQTL 3.70e-01 0.0906 0.101 0.63 cMono_S100A L2
ENSG00000284543 LINC01226 -621373 sc-eQTL 8.44e-01 -0.0162 0.0821 0.63 cMono_S100A L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 2.66e-01 -0.0917 0.0822 0.63 cMono_S100A L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 6.01e-01 -0.0668 0.128 0.645 gdT L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 4.49e-01 -0.0832 0.11 0.645 gdT L2
ENSG00000134644 PUM1 -181138 sc-eQTL 9.21e-01 -0.0113 0.113 0.645 gdT L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 9.41e-01 -0.00909 0.123 0.645 gdT L2
ENSG00000162517 PEF1 -760043 sc-eQTL 8.72e-02 0.192 0.111 0.645 gdT L2
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 7.18e-01 0.0411 0.113 0.645 gdT L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 7.51e-01 0.035 0.11 0.645 gdT L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 9.09e-01 0.0108 0.0944 0.638 intMono L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 1.08e-01 0.163 0.101 0.638 intMono L2
ENSG00000134644 PUM1 -181138 sc-eQTL 3.09e-01 -0.0875 0.0859 0.638 intMono L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 1.41e-01 0.0992 0.0672 0.638 intMono L2
ENSG00000162512 SDC3 -23905 sc-eQTL 3.96e-01 -0.0784 0.0923 0.638 intMono L2
ENSG00000162517 PEF1 -760043 sc-eQTL 3.37e-02 0.205 0.0961 0.638 intMono L2
ENSG00000168528 SERINC2 -524712 sc-eQTL 1.65e-01 0.134 0.0963 0.638 intMono L2
ENSG00000284543 LINC01226 -621373 sc-eQTL 7.55e-01 -0.0286 0.0917 0.638 intMono L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 1.58e-01 0.129 0.0913 0.638 intMono L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 9.38e-01 0.00682 0.0873 0.629 ncMono L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 4.16e-01 -0.0758 0.0929 0.629 ncMono L2
ENSG00000134644 PUM1 -181138 sc-eQTL 8.81e-01 -0.0114 0.0761 0.629 ncMono L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 4.14e-01 0.0564 0.069 0.629 ncMono L2
ENSG00000162512 SDC3 -23905 sc-eQTL 2.45e-01 -0.0899 0.0772 0.629 ncMono L2
ENSG00000162517 PEF1 -760043 sc-eQTL 8.89e-01 -0.0124 0.0888 0.629 ncMono L2
ENSG00000168528 SERINC2 -524712 sc-eQTL 3.25e-01 0.0832 0.0843 0.629 ncMono L2
ENSG00000284543 LINC01226 -621373 sc-eQTL 1.24e-02 0.21 0.0831 0.629 ncMono L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 6.49e-01 -0.0399 0.0875 0.629 ncMono L2
ENSG00000060688 SNRNP40 -411935 sc-eQTL 1.66e-01 -0.137 0.0988 0.613 pDC L2
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 2.80e-01 -0.118 0.109 0.613 pDC L2
ENSG00000134644 PUM1 -181138 sc-eQTL 9.61e-01 0.0044 0.0905 0.613 pDC L2
ENSG00000162511 LAPTM5 127079 sc-eQTL 4.18e-01 0.0682 0.0839 0.613 pDC L2
ENSG00000162517 PEF1 -760043 sc-eQTL 7.99e-01 -0.0278 0.109 0.613 pDC L2
ENSG00000168528 SERINC2 -524712 sc-eQTL 4.35e-01 0.0796 0.102 0.613 pDC L2
ENSG00000284543 LINC01226 -621373 sc-eQTL 8.29e-01 -0.0172 0.0792 0.613 pDC L2
ENSG00000287510 AL137857.1 153160 sc-eQTL 6.92e-01 0.037 0.0931 0.613 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -411935 sc-eQTL 2.50e-01 -0.116 0.1 0.63 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 6.99e-01 -0.0324 0.0837 0.63 B_Memory LOneK1K
ENSG00000134644 PUM1 -181138 sc-eQTL 4.47e-01 -0.0565 0.0741 0.63 B_Memory LOneK1K
ENSG00000162510 MATN1 161268 sc-eQTL 1.44e-01 -0.124 0.0841 0.63 B_Memory LOneK1K
ENSG00000162511 LAPTM5 127079 sc-eQTL 2.01e-01 -0.0679 0.0529 0.63 B_Memory LOneK1K
ENSG00000162517 PEF1 -760043 sc-eQTL 6.35e-01 -0.0418 0.088 0.63 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 9.48e-01 0.00455 0.0703 0.63 B_Memory LOneK1K
ENSG00000287510 AL137857.1 153160 sc-eQTL 7.81e-02 0.135 0.076 0.63 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -411935 sc-eQTL 6.62e-01 0.0396 0.0905 0.63 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 7.35e-01 0.0243 0.0716 0.63 B_Naive LOneK1K
ENSG00000134644 PUM1 -181138 sc-eQTL 3.19e-01 -0.0675 0.0676 0.63 B_Naive LOneK1K
ENSG00000162510 MATN1 161268 sc-eQTL 2.64e-01 0.0728 0.065 0.63 B_Naive LOneK1K
ENSG00000162511 LAPTM5 127079 sc-eQTL 6.74e-01 0.0193 0.0459 0.63 B_Naive LOneK1K
ENSG00000162517 PEF1 -760043 sc-eQTL 9.43e-01 -0.00597 0.0839 0.63 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 7.38e-01 -0.0198 0.0593 0.63 B_Naive LOneK1K
ENSG00000287510 AL137857.1 153160 sc-eQTL 2.93e-01 0.0741 0.0703 0.63 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -411935 sc-eQTL 6.57e-01 0.0338 0.076 0.63 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 8.69e-01 -0.0142 0.0862 0.63 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -181138 sc-eQTL 9.34e-02 0.092 0.0546 0.63 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 127079 sc-eQTL 5.03e-01 0.0324 0.0483 0.63 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -23905 sc-eQTL 2.49e-01 -0.114 0.0983 0.63 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -760043 sc-eQTL 3.48e-01 -0.0651 0.0692 0.63 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -524712 sc-eQTL 2.73e-01 0.111 0.101 0.63 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -621373 sc-eQTL 7.04e-01 -0.0316 0.0831 0.63 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 153160 sc-eQTL 4.90e-01 0.0538 0.0777 0.63 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -411935 sc-eQTL 8.32e-01 -0.0177 0.0833 0.631 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 3.96e-01 0.0775 0.0911 0.631 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -181138 sc-eQTL 2.46e-01 -0.0867 0.0745 0.631 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 127079 sc-eQTL 5.23e-01 0.0382 0.0597 0.631 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -23905 sc-eQTL 2.00e-01 -0.112 0.087 0.631 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -760043 sc-eQTL 3.16e-01 0.0795 0.0791 0.631 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -524712 sc-eQTL 4.07e-01 0.0751 0.0904 0.631 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -621373 sc-eQTL 1.28e-01 0.13 0.0855 0.631 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 153160 sc-eQTL 8.64e-01 -0.0148 0.086 0.631 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -411935 sc-eQTL 5.90e-01 0.0509 0.0943 0.631 NK_CD56dim LOneK1K
ENSG00000121753 ADGRB2 -880040 sc-eQTL 8.19e-01 -0.0184 0.0803 0.631 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -412129 sc-eQTL 6.61e-02 -0.118 0.0639 0.631 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -181138 sc-eQTL 3.41e-01 -0.0672 0.0704 0.631 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 127079 sc-eQTL 4.84e-01 0.0553 0.0788 0.631 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -760043 sc-eQTL 1.79e-01 0.0806 0.0597 0.631 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 166349 sc-eQTL 1.89e-01 0.119 0.0906 0.631 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 153160 sc-eQTL 3.28e-03 0.229 0.0769 0.631 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121766 ZCCHC17 -412129 eQTL 2.31e-02 0.0408 0.0179 0.0 0.0 0.411

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 ZCCHC17 -412129 8.63e-07 8.36e-07 2.15e-07 6.75e-07 9.29e-08 3.11e-07 6.09e-07 1.62e-07 8.61e-07 3.05e-07 1.03e-06 4.55e-07 1.46e-06 2.1e-07 3.56e-07 3.57e-07 4.29e-07 4.16e-07 3.5e-07 2.68e-07 2.38e-07 4.66e-07 4.01e-07 2.71e-07 1.53e-06 2.7e-07 4.71e-07 3.95e-07 4.15e-07 6.19e-07 4.59e-07 5.06e-08 5.47e-08 3.78e-07 3.29e-07 1.46e-07 5.58e-07 1.14e-07 1.44e-07 2.42e-07 2.37e-07 6.27e-07 6.37e-08 3.36e-08 1.49e-07 1.55e-08 1.21e-07 2.31e-08 5.54e-08
ENSG00000186056 \N 166349 3.99e-06 4.7e-06 7.63e-07 3.4e-06 7.58e-07 1.29e-06 2.96e-06 9.28e-07 5.06e-06 2.02e-06 4.14e-06 3.04e-06 7.05e-06 2.31e-06 1.4e-06 2.66e-06 1.8e-06 2.83e-06 1.27e-06 9.15e-07 1.99e-06 3.42e-06 3.47e-06 1.83e-06 6.41e-06 1.13e-06 2.35e-06 1.48e-06 3.77e-06 2.93e-06 2.75e-06 4.17e-07 6.49e-07 1.52e-06 2.13e-06 9.08e-07 1.08e-06 4.58e-07 9.45e-07 7.42e-07 7.52e-07 4.47e-06 4.01e-07 1.69e-07 3.44e-07 3.54e-07 6.79e-07 2.26e-07 1.56e-07