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Genes within 1Mb (chr1:30881650:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -415138 sc-eQTL 6.55e-01 0.0367 0.0821 0.594 B L1
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 8.26e-01 0.0145 0.0658 0.594 B L1
ENSG00000134644 PUM1 -184341 sc-eQTL 4.14e-01 -0.0451 0.0551 0.594 B L1
ENSG00000162510 MATN1 158065 sc-eQTL 5.62e-01 0.0337 0.058 0.594 B L1
ENSG00000162511 LAPTM5 123876 sc-eQTL 2.65e-01 -0.0507 0.0453 0.594 B L1
ENSG00000162517 PEF1 -763246 sc-eQTL 7.88e-01 -0.0184 0.0686 0.594 B L1
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 6.56e-01 -0.0238 0.0532 0.594 B L1
ENSG00000287510 AL137857.1 149957 sc-eQTL 8.86e-02 0.107 0.0626 0.594 B L1
ENSG00000060688 SNRNP40 -415138 sc-eQTL 1.59e-01 -0.101 0.0716 0.594 CD4T L1
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 7.19e-01 -0.0202 0.0562 0.594 CD4T L1
ENSG00000134644 PUM1 -184341 sc-eQTL 9.18e-01 -0.00518 0.05 0.594 CD4T L1
ENSG00000162511 LAPTM5 123876 sc-eQTL 7.50e-01 0.0177 0.0554 0.594 CD4T L1
ENSG00000162517 PEF1 -763246 sc-eQTL 6.99e-01 -0.0224 0.0579 0.594 CD4T L1
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 7.37e-01 -0.0167 0.0496 0.594 CD4T L1
ENSG00000287510 AL137857.1 149957 sc-eQTL 2.75e-01 0.0648 0.0592 0.594 CD4T L1
ENSG00000060688 SNRNP40 -415138 sc-eQTL 9.53e-01 -0.00556 0.094 0.594 CD8T L1
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 2.80e-01 0.0675 0.0624 0.594 CD8T L1
ENSG00000134644 PUM1 -184341 sc-eQTL 6.81e-02 -0.1 0.0546 0.594 CD8T L1
ENSG00000162511 LAPTM5 123876 sc-eQTL 2.93e-01 0.0563 0.0533 0.594 CD8T L1
ENSG00000162517 PEF1 -763246 sc-eQTL 5.96e-01 -0.035 0.0658 0.594 CD8T L1
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 9.59e-02 0.104 0.0623 0.594 CD8T L1
ENSG00000287510 AL137857.1 149957 sc-eQTL 5.14e-01 0.0514 0.0787 0.594 CD8T L1
ENSG00000060688 SNRNP40 -415138 sc-eQTL 4.63e-01 -0.0606 0.0825 0.592 DC L1
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 5.86e-02 -0.184 0.0969 0.592 DC L1
ENSG00000134644 PUM1 -184341 sc-eQTL 3.95e-01 -0.0652 0.0765 0.592 DC L1
ENSG00000162511 LAPTM5 123876 sc-eQTL 4.70e-02 0.108 0.0542 0.592 DC L1
ENSG00000162517 PEF1 -763246 sc-eQTL 5.32e-01 -0.0555 0.0886 0.592 DC L1
ENSG00000168528 SERINC2 -527915 sc-eQTL 6.04e-02 0.169 0.0894 0.592 DC L1
ENSG00000284543 LINC01226 -624576 sc-eQTL 6.48e-01 0.0273 0.0597 0.592 DC L1
ENSG00000287510 AL137857.1 149957 sc-eQTL 4.18e-01 0.0701 0.0864 0.592 DC L1
ENSG00000060688 SNRNP40 -415138 sc-eQTL 6.99e-01 0.0248 0.0641 0.594 Mono L1
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 9.44e-01 0.00562 0.0795 0.594 Mono L1
ENSG00000134644 PUM1 -184341 sc-eQTL 2.85e-01 0.0545 0.0508 0.594 Mono L1
ENSG00000162511 LAPTM5 123876 sc-eQTL 7.81e-01 0.013 0.0469 0.594 Mono L1
ENSG00000162512 SDC3 -27108 sc-eQTL 6.96e-02 -0.163 0.0894 0.594 Mono L1
ENSG00000162517 PEF1 -763246 sc-eQTL 3.21e-01 -0.0627 0.063 0.594 Mono L1
ENSG00000168528 SERINC2 -527915 sc-eQTL 1.28e-01 0.147 0.0961 0.594 Mono L1
ENSG00000284543 LINC01226 -624576 sc-eQTL 9.44e-01 -0.00604 0.0851 0.594 Mono L1
ENSG00000287510 AL137857.1 149957 sc-eQTL 9.61e-01 0.00361 0.0744 0.594 Mono L1
ENSG00000060688 SNRNP40 -415138 sc-eQTL 5.10e-01 0.0591 0.0896 0.594 NK L1
ENSG00000121753 ADGRB2 -883243 sc-eQTL 8.27e-01 -0.0169 0.0772 0.594 NK L1
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 2.17e-02 -0.14 0.0606 0.594 NK L1
ENSG00000134644 PUM1 -184341 sc-eQTL 7.01e-01 -0.0248 0.0644 0.594 NK L1
ENSG00000162511 LAPTM5 123876 sc-eQTL 2.20e-01 0.091 0.0739 0.594 NK L1
ENSG00000162517 PEF1 -763246 sc-eQTL 2.67e-01 0.0601 0.054 0.594 NK L1
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 3.72e-01 0.0744 0.0832 0.594 NK L1
ENSG00000287510 AL137857.1 149957 sc-eQTL 8.60e-03 0.201 0.0757 0.594 NK L1
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.81e-01 -0.0102 0.0677 0.594 Other_T L1
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 5.10e-02 -0.141 0.0717 0.594 Other_T L1
ENSG00000134644 PUM1 -184341 sc-eQTL 4.12e-01 0.0535 0.065 0.594 Other_T L1
ENSG00000162511 LAPTM5 123876 sc-eQTL 8.28e-01 -0.0116 0.0533 0.594 Other_T L1
ENSG00000162517 PEF1 -763246 sc-eQTL 5.56e-01 0.042 0.0712 0.594 Other_T L1
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 7.24e-01 -0.0309 0.0873 0.594 Other_T L1
ENSG00000287510 AL137857.1 149957 sc-eQTL 9.97e-01 0.000305 0.091 0.594 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -415138 sc-eQTL 9.80e-01 -0.0027 0.109 0.579 B_Activated L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 6.92e-01 -0.0437 0.11 0.579 B_Activated L2
ENSG00000134644 PUM1 -184341 sc-eQTL 1.56e-01 -0.145 0.102 0.579 B_Activated L2
ENSG00000162510 MATN1 158065 sc-eQTL 5.98e-01 -0.0473 0.0895 0.579 B_Activated L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 6.24e-01 0.0306 0.0624 0.579 B_Activated L2
ENSG00000162517 PEF1 -763246 sc-eQTL 6.82e-01 -0.0437 0.106 0.579 B_Activated L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 3.75e-01 -0.0895 0.101 0.579 B_Activated L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 6.55e-01 -0.0399 0.0892 0.579 B_Activated L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 7.36e-01 0.0341 0.101 0.594 B_Intermediate L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 1.89e-01 -0.11 0.0838 0.594 B_Intermediate L2
ENSG00000134644 PUM1 -184341 sc-eQTL 6.30e-01 -0.0383 0.0793 0.594 B_Intermediate L2
ENSG00000162510 MATN1 158065 sc-eQTL 2.97e-01 -0.0862 0.0824 0.594 B_Intermediate L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 1.82e-01 -0.0677 0.0505 0.594 B_Intermediate L2
ENSG00000162517 PEF1 -763246 sc-eQTL 6.33e-01 -0.045 0.0941 0.594 B_Intermediate L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 8.73e-01 -0.0113 0.0712 0.594 B_Intermediate L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 1.91e-01 0.104 0.0793 0.594 B_Intermediate L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 1.45e-01 -0.143 0.0979 0.593 B_Memory L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 5.60e-01 0.0528 0.0906 0.593 B_Memory L2
ENSG00000134644 PUM1 -184341 sc-eQTL 5.27e-01 -0.0499 0.0788 0.593 B_Memory L2
ENSG00000162510 MATN1 158065 sc-eQTL 6.14e-01 0.0381 0.0754 0.593 B_Memory L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 4.51e-02 -0.134 0.0663 0.593 B_Memory L2
ENSG00000162517 PEF1 -763246 sc-eQTL 7.53e-01 0.0281 0.0893 0.593 B_Memory L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 9.72e-01 -0.00267 0.0765 0.593 B_Memory L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 9.02e-02 0.152 0.089 0.593 B_Memory L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 2.61e-01 0.101 0.0897 0.594 B_Naive1 L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 9.86e-01 -0.00135 0.0777 0.594 B_Naive1 L2
ENSG00000134644 PUM1 -184341 sc-eQTL 6.23e-01 -0.0338 0.0685 0.594 B_Naive1 L2
ENSG00000162510 MATN1 158065 sc-eQTL 1.62e-01 0.0971 0.0692 0.594 B_Naive1 L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 5.14e-01 -0.0303 0.0464 0.594 B_Naive1 L2
ENSG00000162517 PEF1 -763246 sc-eQTL 5.57e-01 0.0482 0.0818 0.594 B_Naive1 L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 6.78e-01 -0.0254 0.061 0.594 B_Naive1 L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 2.16e-01 0.0932 0.0751 0.594 B_Naive1 L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 5.30e-01 -0.06 0.0953 0.594 B_Naive2 L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 1.38e-01 0.117 0.0784 0.594 B_Naive2 L2
ENSG00000134644 PUM1 -184341 sc-eQTL 6.73e-01 -0.0325 0.0771 0.594 B_Naive2 L2
ENSG00000162510 MATN1 158065 sc-eQTL 1.65e-01 0.103 0.0737 0.594 B_Naive2 L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 3.01e-01 -0.052 0.0501 0.594 B_Naive2 L2
ENSG00000162517 PEF1 -763246 sc-eQTL 5.61e-01 -0.0532 0.0914 0.594 B_Naive2 L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 7.29e-01 0.0253 0.0732 0.594 B_Naive2 L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 3.04e-01 0.0813 0.0788 0.594 B_Naive2 L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.61e-01 0.0168 0.0958 0.591 CD4_CTL L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 4.18e-01 -0.0764 0.094 0.591 CD4_CTL L2
ENSG00000134644 PUM1 -184341 sc-eQTL 9.09e-01 0.0106 0.0924 0.591 CD4_CTL L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 8.16e-01 -0.0192 0.0823 0.591 CD4_CTL L2
ENSG00000162517 PEF1 -763246 sc-eQTL 1.02e-01 -0.138 0.0839 0.591 CD4_CTL L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 1.32e-01 -0.136 0.0896 0.591 CD4_CTL L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 6.36e-01 0.0377 0.0794 0.591 CD4_CTL L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 5.34e-02 -0.144 0.074 0.594 CD4_Naive L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 7.13e-01 0.0243 0.0662 0.594 CD4_Naive L2
ENSG00000134644 PUM1 -184341 sc-eQTL 6.15e-01 -0.0266 0.0528 0.594 CD4_Naive L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 4.56e-01 0.0422 0.0566 0.594 CD4_Naive L2
ENSG00000162517 PEF1 -763246 sc-eQTL 6.22e-01 -0.0307 0.0621 0.594 CD4_Naive L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 9.47e-01 0.00384 0.0575 0.594 CD4_Naive L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 7.45e-01 0.0215 0.066 0.594 CD4_Naive L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 7.94e-01 -0.025 0.0956 0.594 CD4_TCM L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 5.10e-01 -0.0509 0.077 0.594 CD4_TCM L2
ENSG00000134644 PUM1 -184341 sc-eQTL 1.93e-01 0.0887 0.068 0.594 CD4_TCM L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 6.72e-01 -0.024 0.0566 0.594 CD4_TCM L2
ENSG00000162517 PEF1 -763246 sc-eQTL 2.81e-01 0.0817 0.0757 0.594 CD4_TCM L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 7.04e-01 -0.0273 0.0718 0.594 CD4_TCM L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 3.47e-01 0.0753 0.0798 0.594 CD4_TCM L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 4.60e-01 0.07 0.0946 0.594 CD4_TEM L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 3.19e-01 -0.0899 0.09 0.594 CD4_TEM L2
ENSG00000134644 PUM1 -184341 sc-eQTL 7.10e-01 0.028 0.0751 0.594 CD4_TEM L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 1.84e-01 0.101 0.0757 0.594 CD4_TEM L2
ENSG00000162517 PEF1 -763246 sc-eQTL 1.27e-01 -0.13 0.0847 0.594 CD4_TEM L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 4.79e-01 0.063 0.0888 0.594 CD4_TEM L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 3.31e-01 0.0852 0.0874 0.594 CD4_TEM L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 5.69e-01 0.058 0.102 0.594 CD8_CTL L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 1.28e-01 0.119 0.0776 0.594 CD8_CTL L2
ENSG00000134644 PUM1 -184341 sc-eQTL 2.64e-01 -0.0846 0.0755 0.594 CD8_CTL L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 6.10e-01 0.0429 0.0839 0.594 CD8_CTL L2
ENSG00000162517 PEF1 -763246 sc-eQTL 5.56e-01 -0.043 0.073 0.594 CD8_CTL L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 4.89e-01 0.061 0.0881 0.594 CD8_CTL L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 5.17e-01 0.0538 0.0829 0.594 CD8_CTL L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.40e-01 -0.019 0.0943 0.594 CD8_Naive L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 8.68e-01 -0.0135 0.0813 0.594 CD8_Naive L2
ENSG00000134644 PUM1 -184341 sc-eQTL 1.82e-01 -0.0872 0.0652 0.594 CD8_Naive L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 8.99e-01 0.00798 0.0627 0.594 CD8_Naive L2
ENSG00000162517 PEF1 -763246 sc-eQTL 6.61e-01 0.0382 0.0871 0.594 CD8_Naive L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 3.02e-01 0.0808 0.0781 0.594 CD8_Naive L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 7.27e-01 0.0298 0.0852 0.594 CD8_Naive L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 4.39e-01 -0.0813 0.105 0.6 CD8_TCM L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 3.93e-01 0.0822 0.0961 0.6 CD8_TCM L2
ENSG00000134644 PUM1 -184341 sc-eQTL 5.42e-01 0.0552 0.0904 0.6 CD8_TCM L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 1.40e-01 0.14 0.0942 0.6 CD8_TCM L2
ENSG00000162517 PEF1 -763246 sc-eQTL 1.89e-01 -0.127 0.0964 0.6 CD8_TCM L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 3.91e-01 0.0752 0.0875 0.6 CD8_TCM L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 8.82e-01 0.0132 0.0886 0.6 CD8_TCM L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 1.81e-01 -0.131 0.0976 0.591 CD8_TEM L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 2.99e-01 -0.0977 0.0938 0.591 CD8_TEM L2
ENSG00000134644 PUM1 -184341 sc-eQTL 9.87e-01 0.00162 0.0961 0.591 CD8_TEM L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 6.12e-01 -0.0458 0.0903 0.591 CD8_TEM L2
ENSG00000162517 PEF1 -763246 sc-eQTL 7.62e-01 -0.0258 0.0851 0.591 CD8_TEM L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 4.37e-01 0.0729 0.0936 0.591 CD8_TEM L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 7.34e-01 -0.0288 0.0849 0.591 CD8_TEM L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 5.63e-01 -0.0576 0.0994 0.593 MAIT L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 6.54e-01 -0.0395 0.0881 0.593 MAIT L2
ENSG00000134644 PUM1 -184341 sc-eQTL 9.94e-01 0.00059 0.0845 0.593 MAIT L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 7.29e-01 0.0277 0.0797 0.593 MAIT L2
ENSG00000162517 PEF1 -763246 sc-eQTL 7.62e-01 -0.0266 0.0876 0.593 MAIT L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 1.91e-01 0.116 0.0884 0.593 MAIT L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 6.39e-01 -0.0429 0.0914 0.593 MAIT L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.82e-01 0.0153 0.103 0.587 NK_CD56bright L2
ENSG00000121753 ADGRB2 -883243 sc-eQTL 3.00e-01 -0.0836 0.0805 0.587 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 2.36e-02 -0.196 0.086 0.587 NK_CD56bright L2
ENSG00000134644 PUM1 -184341 sc-eQTL 3.05e-02 0.197 0.0904 0.587 NK_CD56bright L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 7.80e-01 0.0252 0.0902 0.587 NK_CD56bright L2
ENSG00000162517 PEF1 -763246 sc-eQTL 6.15e-01 0.0442 0.0875 0.587 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 9.10e-01 -0.0103 0.0906 0.587 NK_CD56bright L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 3.95e-01 -0.076 0.0891 0.587 NK_CD56bright L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 5.18e-01 -0.0614 0.0947 0.595 NK_CD56dim L2
ENSG00000121753 ADGRB2 -883243 sc-eQTL 9.94e-01 0.000583 0.0834 0.595 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 2.52e-01 -0.0802 0.0698 0.595 NK_CD56dim L2
ENSG00000134644 PUM1 -184341 sc-eQTL 5.66e-01 -0.0413 0.0718 0.595 NK_CD56dim L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 3.32e-01 0.0743 0.0765 0.595 NK_CD56dim L2
ENSG00000162517 PEF1 -763246 sc-eQTL 1.66e-01 0.0945 0.0679 0.595 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 7.37e-01 0.0323 0.096 0.595 NK_CD56dim L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 1.49e-02 0.192 0.0781 0.595 NK_CD56dim L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.03e-01 -0.0252 0.101 0.582 NK_HLA L2
ENSG00000121753 ADGRB2 -883243 sc-eQTL 5.23e-01 0.0511 0.0798 0.582 NK_HLA L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 1.46e-01 -0.13 0.0894 0.582 NK_HLA L2
ENSG00000134644 PUM1 -184341 sc-eQTL 7.13e-01 -0.0322 0.0875 0.582 NK_HLA L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 8.29e-01 0.0181 0.0836 0.582 NK_HLA L2
ENSG00000162517 PEF1 -763246 sc-eQTL 9.28e-02 -0.158 0.0935 0.582 NK_HLA L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 6.01e-01 0.0465 0.0888 0.582 NK_HLA L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 1.15e-03 0.276 0.0837 0.582 NK_HLA L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 7.47e-02 0.165 0.0921 0.595 NK_cytokine L2
ENSG00000121753 ADGRB2 -883243 sc-eQTL 6.01e-01 -0.0439 0.0838 0.595 NK_cytokine L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 2.69e-01 -0.08 0.0722 0.595 NK_cytokine L2
ENSG00000134644 PUM1 -184341 sc-eQTL 1.24e-01 -0.12 0.0779 0.595 NK_cytokine L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 6.44e-01 0.0399 0.0862 0.595 NK_cytokine L2
ENSG00000162517 PEF1 -763246 sc-eQTL 7.02e-01 -0.0282 0.0735 0.595 NK_cytokine L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 6.04e-01 0.0474 0.0913 0.595 NK_cytokine L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 4.55e-02 0.169 0.0842 0.595 NK_cytokine L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 2.19e-01 0.137 0.11 0.593 PB L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 2.96e-01 -0.135 0.128 0.593 PB L2
ENSG00000134644 PUM1 -184341 sc-eQTL 9.32e-01 0.00957 0.112 0.593 PB L2
ENSG00000162510 MATN1 158065 sc-eQTL 9.09e-01 -0.012 0.104 0.593 PB L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 7.23e-01 0.0265 0.0745 0.593 PB L2
ENSG00000162517 PEF1 -763246 sc-eQTL 3.98e-01 0.097 0.114 0.593 PB L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 8.04e-01 -0.0254 0.102 0.593 PB L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 7.21e-01 -0.0389 0.109 0.593 PB L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 7.83e-01 0.0201 0.073 0.591 Pro_T L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 2.34e-02 -0.209 0.0916 0.591 Pro_T L2
ENSG00000134644 PUM1 -184341 sc-eQTL 1.21e-01 0.134 0.086 0.591 Pro_T L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 5.57e-01 -0.0365 0.062 0.591 Pro_T L2
ENSG00000162517 PEF1 -763246 sc-eQTL 1.39e-01 -0.135 0.0906 0.591 Pro_T L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 3.93e-03 -0.248 0.085 0.591 Pro_T L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 7.58e-01 0.0246 0.0797 0.591 Pro_T L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 4.07e-01 0.0812 0.0976 0.594 Treg L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 5.23e-01 -0.0605 0.0945 0.594 Treg L2
ENSG00000134644 PUM1 -184341 sc-eQTL 7.57e-01 -0.0234 0.0757 0.594 Treg L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 8.49e-01 0.0166 0.0867 0.594 Treg L2
ENSG00000162517 PEF1 -763246 sc-eQTL 9.37e-01 0.00736 0.0937 0.594 Treg L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 6.20e-01 0.0438 0.0883 0.594 Treg L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 8.79e-01 -0.0134 0.0882 0.594 Treg L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 5.15e-01 -0.065 0.0997 0.6 cDC L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 7.47e-01 -0.0349 0.108 0.6 cDC L2
ENSG00000134644 PUM1 -184341 sc-eQTL 8.27e-01 -0.0203 0.0928 0.6 cDC L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 3.14e-01 0.0655 0.0649 0.6 cDC L2
ENSG00000162517 PEF1 -763246 sc-eQTL 7.99e-01 -0.024 0.0942 0.6 cDC L2
ENSG00000168528 SERINC2 -527915 sc-eQTL 2.64e-01 0.0933 0.0832 0.6 cDC L2
ENSG00000284543 LINC01226 -624576 sc-eQTL 1.72e-01 -0.112 0.0816 0.6 cDC L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 7.91e-02 0.155 0.0876 0.6 cDC L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 2.64e-01 0.0863 0.0771 0.594 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 6.23e-01 -0.0425 0.0862 0.594 cMono_IL1B L2
ENSG00000134644 PUM1 -184341 sc-eQTL 1.46e-01 0.0848 0.0581 0.594 cMono_IL1B L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 4.64e-01 0.0376 0.0512 0.594 cMono_IL1B L2
ENSG00000162512 SDC3 -27108 sc-eQTL 3.45e-01 -0.0913 0.0963 0.594 cMono_IL1B L2
ENSG00000162517 PEF1 -763246 sc-eQTL 5.50e-01 -0.0472 0.0788 0.594 cMono_IL1B L2
ENSG00000168528 SERINC2 -527915 sc-eQTL 8.72e-02 0.167 0.097 0.594 cMono_IL1B L2
ENSG00000284543 LINC01226 -624576 sc-eQTL 8.57e-01 -0.0156 0.0864 0.594 cMono_IL1B L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 1.40e-02 0.197 0.0794 0.594 cMono_IL1B L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.39e-01 -0.0165 0.0815 0.594 cMono_S100A L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 7.74e-01 0.0276 0.0962 0.594 cMono_S100A L2
ENSG00000134644 PUM1 -184341 sc-eQTL 1.00e-01 0.114 0.0691 0.594 cMono_S100A L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 9.34e-01 -0.00441 0.0535 0.594 cMono_S100A L2
ENSG00000162512 SDC3 -27108 sc-eQTL 6.79e-01 -0.0383 0.0923 0.594 cMono_S100A L2
ENSG00000162517 PEF1 -763246 sc-eQTL 2.81e-01 -0.0899 0.0832 0.594 cMono_S100A L2
ENSG00000168528 SERINC2 -527915 sc-eQTL 2.25e-01 0.118 0.0975 0.594 cMono_S100A L2
ENSG00000284543 LINC01226 -624576 sc-eQTL 9.24e-01 0.00756 0.0794 0.594 cMono_S100A L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 5.60e-01 -0.0465 0.0797 0.594 cMono_S100A L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.60e-01 -0.0215 0.122 0.603 gdT L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 3.65e-01 -0.0948 0.104 0.603 gdT L2
ENSG00000134644 PUM1 -184341 sc-eQTL 9.77e-01 0.00311 0.108 0.603 gdT L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 8.60e-01 -0.0208 0.117 0.603 gdT L2
ENSG00000162517 PEF1 -763246 sc-eQTL 6.50e-02 0.197 0.106 0.603 gdT L2
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 6.34e-01 -0.0515 0.108 0.603 gdT L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 3.02e-01 0.108 0.104 0.603 gdT L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.42e-01 0.0183 0.0922 0.602 intMono L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 1.32e-01 0.149 0.0985 0.602 intMono L2
ENSG00000134644 PUM1 -184341 sc-eQTL 2.04e-01 -0.107 0.0837 0.602 intMono L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 1.80e-01 0.0883 0.0657 0.602 intMono L2
ENSG00000162512 SDC3 -27108 sc-eQTL 3.61e-01 -0.0826 0.0901 0.602 intMono L2
ENSG00000162517 PEF1 -763246 sc-eQTL 9.99e-02 0.156 0.0943 0.602 intMono L2
ENSG00000168528 SERINC2 -527915 sc-eQTL 1.34e-01 0.141 0.094 0.602 intMono L2
ENSG00000284543 LINC01226 -624576 sc-eQTL 9.03e-01 0.011 0.0896 0.602 intMono L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 2.69e-01 0.099 0.0894 0.602 intMono L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 8.69e-01 0.014 0.0847 0.593 ncMono L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 7.26e-01 -0.0317 0.0903 0.593 ncMono L2
ENSG00000134644 PUM1 -184341 sc-eQTL 5.06e-01 -0.0491 0.0737 0.593 ncMono L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 2.46e-01 0.0778 0.0668 0.593 ncMono L2
ENSG00000162512 SDC3 -27108 sc-eQTL 8.14e-02 -0.131 0.0746 0.593 ncMono L2
ENSG00000162517 PEF1 -763246 sc-eQTL 7.22e-01 -0.0307 0.0862 0.593 ncMono L2
ENSG00000168528 SERINC2 -527915 sc-eQTL 1.81e-01 0.11 0.0817 0.593 ncMono L2
ENSG00000284543 LINC01226 -624576 sc-eQTL 4.46e-02 0.164 0.0811 0.593 ncMono L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 2.19e-01 -0.104 0.0846 0.593 ncMono L2
ENSG00000060688 SNRNP40 -415138 sc-eQTL 4.05e-01 -0.0827 0.0991 0.576 pDC L2
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 3.44e-01 -0.103 0.109 0.576 pDC L2
ENSG00000134644 PUM1 -184341 sc-eQTL 6.81e-01 0.0372 0.0903 0.576 pDC L2
ENSG00000162511 LAPTM5 123876 sc-eQTL 4.31e-01 0.0662 0.0838 0.576 pDC L2
ENSG00000162517 PEF1 -763246 sc-eQTL 3.20e-01 -0.108 0.109 0.576 pDC L2
ENSG00000168528 SERINC2 -527915 sc-eQTL 1.90e-01 0.133 0.101 0.576 pDC L2
ENSG00000284543 LINC01226 -624576 sc-eQTL 9.89e-01 0.00113 0.0791 0.576 pDC L2
ENSG00000287510 AL137857.1 149957 sc-eQTL 5.19e-01 0.06 0.0929 0.576 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -415138 sc-eQTL 4.47e-01 -0.0736 0.0966 0.594 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 6.36e-01 -0.0381 0.0804 0.594 B_Memory LOneK1K
ENSG00000134644 PUM1 -184341 sc-eQTL 2.49e-01 -0.0821 0.0711 0.594 B_Memory LOneK1K
ENSG00000162510 MATN1 158065 sc-eQTL 1.81e-01 -0.109 0.081 0.594 B_Memory LOneK1K
ENSG00000162511 LAPTM5 123876 sc-eQTL 8.82e-02 -0.0869 0.0507 0.594 B_Memory LOneK1K
ENSG00000162517 PEF1 -763246 sc-eQTL 7.27e-01 -0.0296 0.0846 0.594 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 9.30e-01 -0.00597 0.0676 0.594 B_Memory LOneK1K
ENSG00000287510 AL137857.1 149957 sc-eQTL 7.74e-02 0.13 0.0731 0.594 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -415138 sc-eQTL 6.77e-01 0.0364 0.0872 0.594 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 3.54e-01 0.064 0.0688 0.594 B_Naive LOneK1K
ENSG00000134644 PUM1 -184341 sc-eQTL 5.29e-01 -0.0411 0.0652 0.594 B_Naive LOneK1K
ENSG00000162510 MATN1 158065 sc-eQTL 1.94e-01 0.0816 0.0626 0.594 B_Naive LOneK1K
ENSG00000162511 LAPTM5 123876 sc-eQTL 7.72e-01 -0.0128 0.0442 0.594 B_Naive LOneK1K
ENSG00000162517 PEF1 -763246 sc-eQTL 9.26e-01 0.00752 0.0807 0.594 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 4.49e-01 -0.0432 0.057 0.594 B_Naive LOneK1K
ENSG00000287510 AL137857.1 149957 sc-eQTL 1.42e-01 0.0995 0.0675 0.594 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -415138 sc-eQTL 3.93e-01 0.0628 0.0734 0.594 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 9.32e-01 -0.00708 0.0833 0.594 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -184341 sc-eQTL 6.98e-02 0.096 0.0527 0.594 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 123876 sc-eQTL 6.42e-01 0.0218 0.0467 0.594 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -27108 sc-eQTL 2.51e-01 -0.109 0.0949 0.594 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -763246 sc-eQTL 1.76e-01 -0.0904 0.0667 0.594 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -527915 sc-eQTL 1.30e-01 0.148 0.0974 0.594 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -624576 sc-eQTL 9.77e-01 -0.00231 0.0803 0.594 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 149957 sc-eQTL 2.10e-01 0.0942 0.0749 0.594 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -415138 sc-eQTL 9.50e-01 0.00502 0.0802 0.595 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 3.25e-01 0.0864 0.0875 0.595 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -184341 sc-eQTL 1.25e-01 -0.11 0.0715 0.595 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 123876 sc-eQTL 4.65e-01 0.0421 0.0574 0.595 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -27108 sc-eQTL 3.60e-02 -0.175 0.0831 0.595 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -763246 sc-eQTL 7.14e-01 0.028 0.0763 0.595 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -527915 sc-eQTL 3.52e-01 0.0811 0.0869 0.595 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -624576 sc-eQTL 1.00e-01 0.136 0.0821 0.595 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 149957 sc-eQTL 3.22e-01 -0.0819 0.0826 0.595 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -415138 sc-eQTL 5.81e-01 0.0498 0.0902 0.595 NK_CD56dim LOneK1K
ENSG00000121753 ADGRB2 -883243 sc-eQTL 8.87e-01 -0.011 0.0768 0.595 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -415332 sc-eQTL 8.03e-02 -0.108 0.0612 0.595 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -184341 sc-eQTL 3.14e-01 -0.068 0.0674 0.595 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 123876 sc-eQTL 3.24e-01 0.0744 0.0753 0.595 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -763246 sc-eQTL 4.98e-01 0.0389 0.0573 0.595 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 163146 sc-eQTL 2.92e-01 0.0918 0.0868 0.595 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 149957 sc-eQTL 2.67e-03 0.223 0.0735 0.595 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121766 ZCCHC17 -415332 eQTL 4.42e-02 0.0356 0.0177 0.0 0.0 0.44

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 ZCCHC17 -415332 3.62e-07 2.67e-07 7e-08 4.31e-07 1.1e-07 1.74e-07 3.42e-07 5.84e-08 2.38e-07 1.15e-07 3.21e-07 1.86e-07 3.4e-07 1.01e-07 6.6e-08 9.48e-08 5.57e-08 2.15e-07 8.68e-08 5.07e-08 1.27e-07 1.89e-07 1.69e-07 3.59e-08 3.14e-07 1.56e-07 1.29e-07 1.1e-07 1.32e-07 1.81e-07 1.59e-07 8.25e-08 3.59e-08 1.39e-07 3.4e-07 2.69e-08 1.18e-07 7.98e-08 4.83e-08 2.68e-08 5.05e-08 1.55e-07 2.32e-08 1.99e-07 3.66e-08 8.94e-09 7.13e-08 0.0 4.82e-08
ENSG00000186056 \N 163146 3.58e-06 4.65e-06 6.89e-07 3.29e-06 6.64e-07 1.57e-06 2.48e-06 6.87e-07 3.14e-06 1.29e-06 3.2e-06 2.5e-06 4.48e-06 2.04e-06 8.95e-07 1.79e-06 1.17e-06 2.2e-06 1.08e-06 1.04e-06 1.15e-06 3.41e-06 2.35e-06 1.1e-06 4.53e-06 1.36e-06 1.8e-06 1.46e-06 1.96e-06 2.37e-06 2e-06 4.16e-07 3.49e-07 1.35e-06 2.09e-06 5.99e-07 8.57e-07 4.91e-07 7.85e-07 3.57e-07 3.35e-07 4.11e-06 4.01e-07 2.36e-07 3.14e-07 3.6e-07 8.3e-07 2.21e-07 2.41e-07