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Genes within 1Mb (chr1:30878666:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -418122 sc-eQTL 5.54e-01 0.122 0.205 0.052 CD4_CTL L2
ENSG00000121766 ZCCHC17 -418316 sc-eQTL 9.57e-01 0.011 0.202 0.052 CD4_CTL L2
ENSG00000134644 PUM1 -187325 sc-eQTL 9.84e-01 -0.00402 0.198 0.052 CD4_CTL L2
ENSG00000162511 LAPTM5 120892 sc-eQTL 7.21e-02 -0.317 0.175 0.052 CD4_CTL L2
ENSG00000162517 PEF1 -766230 sc-eQTL 9.14e-02 0.305 0.18 0.052 CD4_CTL L2
ENSG00000186056 MATN1-AS1 160162 sc-eQTL 1.47e-01 -0.28 0.192 0.052 CD4_CTL L2
ENSG00000287510 AL137857.1 146973 sc-eQTL 9.82e-01 0.00393 0.17 0.052 CD4_CTL L2
ENSG00000060688 SNRNP40 -418122 sc-eQTL 6.56e-01 0.0975 0.218 0.053 CD8_TCM L2
ENSG00000121766 ZCCHC17 -418316 sc-eQTL 1.24e-01 -0.308 0.199 0.053 CD8_TCM L2
ENSG00000134644 PUM1 -187325 sc-eQTL 6.19e-01 0.0937 0.188 0.053 CD8_TCM L2
ENSG00000162511 LAPTM5 120892 sc-eQTL 6.56e-01 -0.0878 0.197 0.053 CD8_TCM L2
ENSG00000162517 PEF1 -766230 sc-eQTL 6.71e-01 0.0856 0.201 0.053 CD8_TCM L2
ENSG00000186056 MATN1-AS1 160162 sc-eQTL 4.33e-01 0.143 0.182 0.053 CD8_TCM L2
ENSG00000287510 AL137857.1 146973 sc-eQTL 8.52e-01 0.0344 0.184 0.053 CD8_TCM L2
ENSG00000060688 SNRNP40 -418122 sc-eQTL 6.36e-01 0.103 0.217 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 -418316 sc-eQTL 4.74e-01 -0.149 0.208 0.05 CD8_TEM L2
ENSG00000134644 PUM1 -187325 sc-eQTL 7.91e-02 0.373 0.211 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 120892 sc-eQTL 7.96e-02 -0.35 0.199 0.05 CD8_TEM L2
ENSG00000162517 PEF1 -766230 sc-eQTL 6.36e-01 -0.0894 0.188 0.05 CD8_TEM L2
ENSG00000186056 MATN1-AS1 160162 sc-eQTL 1.36e-01 -0.309 0.207 0.05 CD8_TEM L2
ENSG00000287510 AL137857.1 146973 sc-eQTL 7.53e-01 0.0593 0.188 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 -418122 sc-eQTL 7.90e-01 0.0585 0.219 0.051 NK_CD56bright L2
ENSG00000121753 ADGRB2 -886227 sc-eQTL 4.58e-01 -0.127 0.171 0.051 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -418316 sc-eQTL 2.34e-01 0.22 0.185 0.051 NK_CD56bright L2
ENSG00000134644 PUM1 -187325 sc-eQTL 6.19e-01 -0.0967 0.194 0.051 NK_CD56bright L2
ENSG00000162511 LAPTM5 120892 sc-eQTL 7.52e-01 0.0607 0.192 0.051 NK_CD56bright L2
ENSG00000162517 PEF1 -766230 sc-eQTL 4.94e-01 -0.128 0.186 0.051 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 160162 sc-eQTL 4.74e-01 -0.138 0.192 0.051 NK_CD56bright L2
ENSG00000287510 AL137857.1 146973 sc-eQTL 6.20e-01 -0.0943 0.19 0.051 NK_CD56bright L2
ENSG00000060688 SNRNP40 -418122 sc-eQTL 3.89e-01 0.191 0.221 0.05 NK_HLA L2
ENSG00000121753 ADGRB2 -886227 sc-eQTL 1.70e-01 -0.241 0.175 0.05 NK_HLA L2
ENSG00000121766 ZCCHC17 -418316 sc-eQTL 2.51e-01 -0.227 0.197 0.05 NK_HLA L2
ENSG00000134644 PUM1 -187325 sc-eQTL 7.04e-01 -0.0733 0.193 0.05 NK_HLA L2
ENSG00000162511 LAPTM5 120892 sc-eQTL 7.32e-01 0.0631 0.184 0.05 NK_HLA L2
ENSG00000162517 PEF1 -766230 sc-eQTL 8.95e-01 -0.0275 0.208 0.05 NK_HLA L2
ENSG00000186056 MATN1-AS1 160162 sc-eQTL 9.72e-01 -0.0068 0.196 0.05 NK_HLA L2
ENSG00000287510 AL137857.1 146973 sc-eQTL 9.72e-01 -0.00659 0.19 0.05 NK_HLA L2
ENSG00000060688 SNRNP40 -418122 sc-eQTL 5.67e-01 -0.0932 0.163 0.05 Pro_T L2
ENSG00000121766 ZCCHC17 -418316 sc-eQTL 6.22e-01 -0.102 0.206 0.05 Pro_T L2
ENSG00000134644 PUM1 -187325 sc-eQTL 2.34e-01 -0.229 0.192 0.05 Pro_T L2
ENSG00000162511 LAPTM5 120892 sc-eQTL 3.46e-01 -0.13 0.138 0.05 Pro_T L2
ENSG00000162517 PEF1 -766230 sc-eQTL 5.05e-01 -0.135 0.202 0.05 Pro_T L2
ENSG00000186056 MATN1-AS1 160162 sc-eQTL 9.30e-02 -0.324 0.192 0.05 Pro_T L2
ENSG00000287510 AL137857.1 146973 sc-eQTL 5.75e-01 -0.0996 0.177 0.05 Pro_T L2
ENSG00000060688 SNRNP40 -418122 sc-eQTL 3.58e-01 -0.194 0.21 0.051 cDC L2
ENSG00000121766 ZCCHC17 -418316 sc-eQTL 2.66e-01 -0.253 0.227 0.051 cDC L2
ENSG00000134644 PUM1 -187325 sc-eQTL 8.43e-01 0.0387 0.196 0.051 cDC L2
ENSG00000162511 LAPTM5 120892 sc-eQTL 2.14e-01 -0.17 0.137 0.051 cDC L2
ENSG00000162517 PEF1 -766230 sc-eQTL 1.88e-01 -0.261 0.198 0.051 cDC L2
ENSG00000168528 SERINC2 -530899 sc-eQTL 9.09e-01 -0.0201 0.176 0.051 cDC L2
ENSG00000284543 LINC01226 -627560 sc-eQTL 7.16e-01 0.0631 0.173 0.051 cDC L2
ENSG00000287510 AL137857.1 146973 sc-eQTL 1.13e-01 -0.295 0.185 0.051 cDC L2
ENSG00000060688 SNRNP40 -418122 sc-eQTL 9.17e-01 0.0209 0.2 0.059 pDC L2
ENSG00000121766 ZCCHC17 -418316 sc-eQTL 1.97e-01 -0.283 0.219 0.059 pDC L2
ENSG00000134644 PUM1 -187325 sc-eQTL 1.00e+00 -6.37e-05 0.182 0.059 pDC L2
ENSG00000162511 LAPTM5 120892 sc-eQTL 7.30e-01 -0.0586 0.169 0.059 pDC L2
ENSG00000162517 PEF1 -766230 sc-eQTL 7.30e-01 -0.076 0.22 0.059 pDC L2
ENSG00000168528 SERINC2 -530899 sc-eQTL 9.30e-01 0.018 0.205 0.059 pDC L2
ENSG00000284543 LINC01226 -627560 sc-eQTL 4.87e-01 -0.111 0.159 0.059 pDC L2
ENSG00000287510 AL137857.1 146973 sc-eQTL 4.91e-01 0.129 0.187 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121753 ADGRB2 -886227 eQTL 1.90e-02 0.0975 0.0415 0.00191 0.0 0.0604
ENSG00000186056 MATN1-AS1 160162 eQTL 3.85e-02 -0.0539 0.026 0.0 0.0 0.0604

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina