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Genes within 1Mb (chr1:30861054:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -435734 sc-eQTL 3.57e-01 0.0761 0.0825 0.59 B L1
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 7.13e-01 -0.0244 0.0661 0.59 B L1
ENSG00000134644 PUM1 -204937 sc-eQTL 1.66e-02 -0.132 0.0548 0.59 B L1
ENSG00000162510 MATN1 137469 sc-eQTL 9.68e-01 0.00236 0.0584 0.59 B L1
ENSG00000162511 LAPTM5 103280 sc-eQTL 7.74e-01 0.0131 0.0457 0.59 B L1
ENSG00000162517 PEF1 -783842 sc-eQTL 1.85e-01 -0.0913 0.0687 0.59 B L1
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 4.34e-01 0.0419 0.0535 0.59 B L1
ENSG00000287510 AL137857.1 129361 sc-eQTL 2.09e-01 0.0797 0.0632 0.59 B L1
ENSG00000060688 SNRNP40 -435734 sc-eQTL 9.01e-01 0.00892 0.0717 0.59 CD4T L1
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 8.80e-01 0.00845 0.056 0.59 CD4T L1
ENSG00000134644 PUM1 -204937 sc-eQTL 3.00e-01 -0.0517 0.0498 0.59 CD4T L1
ENSG00000162511 LAPTM5 103280 sc-eQTL 2.48e-01 0.0638 0.0551 0.59 CD4T L1
ENSG00000162517 PEF1 -783842 sc-eQTL 1.35e-01 -0.0864 0.0575 0.59 CD4T L1
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 5.92e-01 0.0265 0.0494 0.59 CD4T L1
ENSG00000287510 AL137857.1 129361 sc-eQTL 3.20e-01 0.0589 0.0591 0.59 CD4T L1
ENSG00000060688 SNRNP40 -435734 sc-eQTL 6.86e-01 0.0381 0.0941 0.59 CD8T L1
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 2.97e-01 0.0653 0.0625 0.59 CD8T L1
ENSG00000134644 PUM1 -204937 sc-eQTL 7.50e-03 -0.146 0.0543 0.59 CD8T L1
ENSG00000162511 LAPTM5 103280 sc-eQTL 7.79e-02 0.0943 0.0532 0.59 CD8T L1
ENSG00000162517 PEF1 -783842 sc-eQTL 9.95e-01 0.000378 0.066 0.59 CD8T L1
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 3.65e-02 0.131 0.0622 0.59 CD8T L1
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.60e-01 0.046 0.0789 0.59 CD8T L1
ENSG00000060688 SNRNP40 -435734 sc-eQTL 6.11e-01 -0.0427 0.0838 0.588 DC L1
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 3.08e-01 -0.101 0.099 0.588 DC L1
ENSG00000134644 PUM1 -204937 sc-eQTL 5.90e-01 -0.0419 0.0777 0.588 DC L1
ENSG00000162511 LAPTM5 103280 sc-eQTL 1.27e-01 0.0845 0.0552 0.588 DC L1
ENSG00000162517 PEF1 -783842 sc-eQTL 7.88e-01 0.0242 0.09 0.588 DC L1
ENSG00000168528 SERINC2 -548511 sc-eQTL 7.74e-01 -0.0263 0.0916 0.588 DC L1
ENSG00000284543 LINC01226 -645172 sc-eQTL 2.35e-01 0.072 0.0605 0.588 DC L1
ENSG00000287510 AL137857.1 129361 sc-eQTL 2.01e-01 0.112 0.0875 0.588 DC L1
ENSG00000060688 SNRNP40 -435734 sc-eQTL 7.19e-01 0.0231 0.0641 0.59 Mono L1
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 4.82e-01 0.056 0.0794 0.59 Mono L1
ENSG00000134644 PUM1 -204937 sc-eQTL 2.95e-01 0.0534 0.0509 0.59 Mono L1
ENSG00000162511 LAPTM5 103280 sc-eQTL 6.93e-01 0.0186 0.0469 0.59 Mono L1
ENSG00000162512 SDC3 -47704 sc-eQTL 1.71e-02 -0.214 0.0889 0.59 Mono L1
ENSG00000162517 PEF1 -783842 sc-eQTL 9.42e-01 0.00457 0.0632 0.59 Mono L1
ENSG00000168528 SERINC2 -548511 sc-eQTL 1.78e-01 0.13 0.0963 0.59 Mono L1
ENSG00000284543 LINC01226 -645172 sc-eQTL 8.73e-01 -0.0137 0.0852 0.59 Mono L1
ENSG00000287510 AL137857.1 129361 sc-eQTL 6.35e-01 0.0354 0.0744 0.59 Mono L1
ENSG00000060688 SNRNP40 -435734 sc-eQTL 2.65e-01 0.101 0.0901 0.59 NK L1
ENSG00000121753 ADGRB2 -903839 sc-eQTL 3.19e-01 0.0775 0.0776 0.59 NK L1
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 1.35e-01 -0.0922 0.0615 0.59 NK L1
ENSG00000134644 PUM1 -204937 sc-eQTL 2.94e-02 -0.141 0.0642 0.59 NK L1
ENSG00000162511 LAPTM5 103280 sc-eQTL 1.43e-01 0.109 0.0743 0.59 NK L1
ENSG00000162517 PEF1 -783842 sc-eQTL 1.13e-01 0.0862 0.0542 0.59 NK L1
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 6.46e-01 0.0386 0.0839 0.59 NK L1
ENSG00000287510 AL137857.1 129361 sc-eQTL 1.38e-02 0.19 0.0764 0.59 NK L1
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.89e-01 -0.0366 0.0675 0.59 Other_T L1
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 8.95e-02 -0.122 0.0717 0.59 Other_T L1
ENSG00000134644 PUM1 -204937 sc-eQTL 4.50e-01 -0.049 0.0648 0.59 Other_T L1
ENSG00000162511 LAPTM5 103280 sc-eQTL 8.68e-01 -0.00882 0.0532 0.59 Other_T L1
ENSG00000162517 PEF1 -783842 sc-eQTL 7.93e-01 0.0187 0.071 0.59 Other_T L1
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 1.29e-01 0.132 0.0866 0.59 Other_T L1
ENSG00000287510 AL137857.1 129361 sc-eQTL 2.73e-01 -0.0994 0.0905 0.59 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -435734 sc-eQTL 8.74e-01 0.0177 0.112 0.582 B_Activated L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 5.21e-01 0.0724 0.113 0.582 B_Activated L2
ENSG00000134644 PUM1 -204937 sc-eQTL 1.04e-02 -0.266 0.103 0.582 B_Activated L2
ENSG00000162510 MATN1 137469 sc-eQTL 6.25e-01 -0.0448 0.0915 0.582 B_Activated L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 7.19e-01 -0.023 0.0638 0.582 B_Activated L2
ENSG00000162517 PEF1 -783842 sc-eQTL 3.41e-01 -0.104 0.108 0.582 B_Activated L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 9.60e-01 -0.00517 0.103 0.582 B_Activated L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 4.59e-01 -0.0676 0.0911 0.582 B_Activated L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.46e-01 -0.0611 0.101 0.59 B_Intermediate L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 5.46e-01 -0.0509 0.0843 0.59 B_Intermediate L2
ENSG00000134644 PUM1 -204937 sc-eQTL 7.90e-01 -0.0212 0.0795 0.59 B_Intermediate L2
ENSG00000162510 MATN1 137469 sc-eQTL 8.76e-01 -0.013 0.0828 0.59 B_Intermediate L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 7.14e-01 -0.0186 0.0508 0.59 B_Intermediate L2
ENSG00000162517 PEF1 -783842 sc-eQTL 9.01e-01 -0.0118 0.0944 0.59 B_Intermediate L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 8.71e-01 -0.0116 0.0713 0.59 B_Intermediate L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.44e-02 0.153 0.0791 0.59 B_Intermediate L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 8.89e-01 -0.0139 0.0998 0.588 B_Memory L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 5.47e-01 0.0554 0.0918 0.588 B_Memory L2
ENSG00000134644 PUM1 -204937 sc-eQTL 6.55e-01 -0.0357 0.0799 0.588 B_Memory L2
ENSG00000162510 MATN1 137469 sc-eQTL 8.69e-01 -0.0127 0.0765 0.588 B_Memory L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 8.81e-01 -0.0102 0.0678 0.588 B_Memory L2
ENSG00000162517 PEF1 -783842 sc-eQTL 6.75e-01 0.038 0.0905 0.588 B_Memory L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 7.62e-01 0.0235 0.0776 0.588 B_Memory L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 6.31e-01 0.0437 0.0908 0.588 B_Memory L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 9.39e-02 0.151 0.0898 0.59 B_Naive1 L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 9.74e-01 -0.00257 0.0781 0.59 B_Naive1 L2
ENSG00000134644 PUM1 -204937 sc-eQTL 7.78e-02 -0.121 0.0684 0.59 B_Naive1 L2
ENSG00000162510 MATN1 137469 sc-eQTL 4.33e-01 0.0548 0.0698 0.59 B_Naive1 L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 7.16e-01 0.017 0.0467 0.59 B_Naive1 L2
ENSG00000162517 PEF1 -783842 sc-eQTL 3.34e-01 0.0795 0.0821 0.59 B_Naive1 L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 4.22e-01 0.0492 0.0612 0.59 B_Naive1 L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 9.39e-01 0.00576 0.0757 0.59 B_Naive1 L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 8.82e-01 0.0144 0.0967 0.59 B_Naive2 L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 6.71e-01 -0.034 0.0798 0.59 B_Naive2 L2
ENSG00000134644 PUM1 -204937 sc-eQTL 6.32e-01 -0.0374 0.078 0.59 B_Naive2 L2
ENSG00000162510 MATN1 137469 sc-eQTL 8.79e-01 -0.0115 0.075 0.59 B_Naive2 L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 9.55e-01 0.0029 0.0509 0.59 B_Naive2 L2
ENSG00000162517 PEF1 -783842 sc-eQTL 1.77e-01 -0.125 0.0922 0.59 B_Naive2 L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 6.12e-01 0.0376 0.0741 0.59 B_Naive2 L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 4.57e-01 0.0596 0.08 0.59 B_Naive2 L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.56e-01 -0.0556 0.0944 0.589 CD4_CTL L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 9.73e-02 -0.154 0.0922 0.589 CD4_CTL L2
ENSG00000134644 PUM1 -204937 sc-eQTL 4.24e-01 0.0729 0.0909 0.589 CD4_CTL L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 1.90e-01 0.106 0.0808 0.589 CD4_CTL L2
ENSG00000162517 PEF1 -783842 sc-eQTL 4.39e-01 -0.0645 0.0831 0.589 CD4_CTL L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 7.46e-01 -0.0287 0.0888 0.589 CD4_CTL L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 1.31e-01 0.118 0.0779 0.589 CD4_CTL L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 3.11e-01 -0.076 0.0748 0.59 CD4_Naive L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 4.64e-01 0.0486 0.0664 0.59 CD4_Naive L2
ENSG00000134644 PUM1 -204937 sc-eQTL 6.44e-02 -0.0979 0.0526 0.59 CD4_Naive L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 3.69e-01 0.0511 0.0568 0.59 CD4_Naive L2
ENSG00000162517 PEF1 -783842 sc-eQTL 2.09e-01 -0.0783 0.0621 0.59 CD4_Naive L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 9.62e-01 -0.00272 0.0577 0.59 CD4_Naive L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.01e-01 0.0446 0.0662 0.59 CD4_Naive L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 3.47e-01 0.0886 0.094 0.59 CD4_TCM L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 5.64e-01 -0.0438 0.0759 0.59 CD4_TCM L2
ENSG00000134644 PUM1 -204937 sc-eQTL 1.39e-01 0.0992 0.0669 0.59 CD4_TCM L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 6.80e-01 0.023 0.0558 0.59 CD4_TCM L2
ENSG00000162517 PEF1 -783842 sc-eQTL 8.61e-01 0.0131 0.0748 0.59 CD4_TCM L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 4.77e-01 0.0504 0.0707 0.59 CD4_TCM L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 1.69e-01 0.108 0.0785 0.59 CD4_TCM L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 8.12e-01 0.0223 0.0939 0.59 CD4_TEM L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 3.30e-01 -0.0872 0.0893 0.59 CD4_TEM L2
ENSG00000134644 PUM1 -204937 sc-eQTL 7.94e-01 0.0195 0.0745 0.59 CD4_TEM L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 2.43e-01 0.0879 0.0752 0.59 CD4_TEM L2
ENSG00000162517 PEF1 -783842 sc-eQTL 9.34e-01 -0.00699 0.0845 0.59 CD4_TEM L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 6.80e-01 0.0364 0.0882 0.59 CD4_TEM L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 7.42e-01 0.0287 0.0869 0.59 CD4_TEM L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 7.41e-01 0.0338 0.102 0.59 CD8_CTL L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 4.48e-01 0.0594 0.0781 0.59 CD8_CTL L2
ENSG00000134644 PUM1 -204937 sc-eQTL 3.01e-01 -0.0786 0.0758 0.59 CD8_CTL L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 2.27e-01 0.102 0.0838 0.59 CD8_CTL L2
ENSG00000162517 PEF1 -783842 sc-eQTL 2.96e-01 -0.0765 0.0731 0.59 CD8_CTL L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 1.11e-01 0.141 0.0879 0.59 CD8_CTL L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.54e-01 0.0492 0.0831 0.59 CD8_CTL L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 4.88e-01 0.0649 0.0934 0.59 CD8_Naive L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 6.78e-01 0.0335 0.0806 0.59 CD8_Naive L2
ENSG00000134644 PUM1 -204937 sc-eQTL 3.76e-02 -0.134 0.0642 0.59 CD8_Naive L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 9.08e-01 0.00717 0.0622 0.59 CD8_Naive L2
ENSG00000162517 PEF1 -783842 sc-eQTL 4.82e-01 0.0608 0.0864 0.59 CD8_Naive L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 3.39e-01 0.0742 0.0775 0.59 CD8_Naive L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 2.02e-01 0.108 0.0842 0.59 CD8_Naive L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.88e-01 0.0564 0.104 0.6 CD8_TCM L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 7.24e-01 0.0337 0.0952 0.6 CD8_TCM L2
ENSG00000134644 PUM1 -204937 sc-eQTL 5.65e-01 0.0516 0.0895 0.6 CD8_TCM L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 1.56e-01 0.133 0.0932 0.6 CD8_TCM L2
ENSG00000162517 PEF1 -783842 sc-eQTL 9.84e-01 0.00193 0.0958 0.6 CD8_TCM L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 9.88e-01 -0.00129 0.0868 0.6 CD8_TCM L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 6.30e-01 0.0423 0.0876 0.6 CD8_TCM L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.95e-01 0.0523 0.0984 0.594 CD8_TEM L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 2.59e-01 -0.106 0.0941 0.594 CD8_TEM L2
ENSG00000134644 PUM1 -204937 sc-eQTL 9.43e-01 0.00693 0.0965 0.594 CD8_TEM L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 7.99e-01 0.0232 0.0907 0.594 CD8_TEM L2
ENSG00000162517 PEF1 -783842 sc-eQTL 9.15e-01 0.0091 0.0854 0.594 CD8_TEM L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 3.94e-01 0.0802 0.094 0.594 CD8_TEM L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 3.91e-01 -0.0731 0.0851 0.594 CD8_TEM L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 7.01e-02 -0.178 0.0979 0.589 MAIT L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 2.83e-01 -0.0939 0.0872 0.589 MAIT L2
ENSG00000134644 PUM1 -204937 sc-eQTL 9.53e-02 -0.139 0.0832 0.589 MAIT L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 3.54e-01 0.0733 0.0789 0.589 MAIT L2
ENSG00000162517 PEF1 -783842 sc-eQTL 9.42e-01 0.00631 0.0868 0.589 MAIT L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 1.54e-03 0.276 0.0859 0.589 MAIT L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 3.63e-01 -0.0825 0.0905 0.589 MAIT L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.93e-01 0.0538 0.1 0.591 NK_CD56bright L2
ENSG00000121753 ADGRB2 -903839 sc-eQTL 8.45e-01 -0.0154 0.0787 0.591 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 1.03e-01 -0.138 0.0844 0.591 NK_CD56bright L2
ENSG00000134644 PUM1 -204937 sc-eQTL 4.51e-01 0.0673 0.0891 0.591 NK_CD56bright L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 9.94e-01 0.000649 0.088 0.591 NK_CD56bright L2
ENSG00000162517 PEF1 -783842 sc-eQTL 1.02e-01 0.14 0.0849 0.591 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 7.21e-02 -0.159 0.0877 0.591 NK_CD56bright L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.16e-01 -0.0566 0.0871 0.591 NK_CD56bright L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 8.21e-01 0.0216 0.0952 0.591 NK_CD56dim L2
ENSG00000121753 ADGRB2 -903839 sc-eQTL 7.14e-01 0.0307 0.0837 0.591 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 2.43e-01 -0.0821 0.0702 0.591 NK_CD56dim L2
ENSG00000134644 PUM1 -204937 sc-eQTL 5.46e-01 -0.0436 0.0722 0.591 NK_CD56dim L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 2.33e-01 0.0918 0.0768 0.591 NK_CD56dim L2
ENSG00000162517 PEF1 -783842 sc-eQTL 8.34e-02 0.118 0.0681 0.591 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 5.44e-01 0.0587 0.0964 0.591 NK_CD56dim L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 7.39e-03 0.212 0.0783 0.591 NK_CD56dim L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.49e-01 0.0604 0.101 0.578 NK_HLA L2
ENSG00000121753 ADGRB2 -903839 sc-eQTL 5.16e-01 0.052 0.0799 0.578 NK_HLA L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 9.32e-01 0.00773 0.09 0.578 NK_HLA L2
ENSG00000134644 PUM1 -204937 sc-eQTL 1.90e-01 -0.115 0.0873 0.578 NK_HLA L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 4.20e-01 0.0675 0.0835 0.578 NK_HLA L2
ENSG00000162517 PEF1 -783842 sc-eQTL 3.68e-01 -0.0849 0.0941 0.578 NK_HLA L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 1.63e-01 0.124 0.0886 0.578 NK_HLA L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.00e-03 0.239 0.0843 0.578 NK_HLA L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 3.90e-01 0.0806 0.0935 0.591 NK_cytokine L2
ENSG00000121753 ADGRB2 -903839 sc-eQTL 2.11e-01 0.106 0.0843 0.591 NK_cytokine L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 4.67e-01 -0.0532 0.073 0.591 NK_cytokine L2
ENSG00000134644 PUM1 -204937 sc-eQTL 1.63e-03 -0.246 0.0772 0.591 NK_cytokine L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 5.30e-01 0.0546 0.0869 0.591 NK_cytokine L2
ENSG00000162517 PEF1 -783842 sc-eQTL 8.12e-01 -0.0176 0.0741 0.591 NK_cytokine L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 7.26e-01 0.0324 0.0922 0.591 NK_cytokine L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 1.90e-01 0.112 0.0855 0.591 NK_cytokine L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 2.50e-01 0.136 0.117 0.6 PB L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 2.87e-01 -0.146 0.136 0.6 PB L2
ENSG00000134644 PUM1 -204937 sc-eQTL 3.48e-01 -0.112 0.118 0.6 PB L2
ENSG00000162510 MATN1 137469 sc-eQTL 8.84e-01 -0.0162 0.111 0.6 PB L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 8.83e-01 0.0117 0.0792 0.6 PB L2
ENSG00000162517 PEF1 -783842 sc-eQTL 1.32e-01 0.183 0.121 0.6 PB L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 7.03e-01 0.0414 0.108 0.6 PB L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 1.29e-01 -0.174 0.114 0.6 PB L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.54e-01 0.0429 0.0725 0.591 Pro_T L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 5.56e-01 -0.0543 0.092 0.591 Pro_T L2
ENSG00000134644 PUM1 -204937 sc-eQTL 8.23e-01 0.0192 0.0859 0.591 Pro_T L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 4.59e-01 -0.0456 0.0615 0.591 Pro_T L2
ENSG00000162517 PEF1 -783842 sc-eQTL 2.81e-01 -0.0975 0.0902 0.591 Pro_T L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 3.79e-01 -0.0758 0.0859 0.591 Pro_T L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 4.60e-01 -0.0585 0.0791 0.591 Pro_T L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 3.93e-01 0.0831 0.097 0.59 Treg L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 6.36e-01 -0.0445 0.094 0.59 Treg L2
ENSG00000134644 PUM1 -204937 sc-eQTL 6.57e-01 -0.0334 0.0752 0.59 Treg L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 4.99e-01 0.0583 0.0861 0.59 Treg L2
ENSG00000162517 PEF1 -783842 sc-eQTL 9.73e-01 0.00319 0.0931 0.59 Treg L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 1.27e-01 0.134 0.0873 0.59 Treg L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 8.93e-01 0.0118 0.0877 0.59 Treg L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 8.44e-01 0.0192 0.0975 0.588 cDC L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 7.92e-01 0.0279 0.106 0.588 cDC L2
ENSG00000134644 PUM1 -204937 sc-eQTL 3.84e-01 0.0789 0.0905 0.588 cDC L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 3.69e-01 0.0572 0.0635 0.588 cDC L2
ENSG00000162517 PEF1 -783842 sc-eQTL 9.62e-01 0.00445 0.0921 0.588 cDC L2
ENSG00000168528 SERINC2 -548511 sc-eQTL 5.11e-01 0.0537 0.0815 0.588 cDC L2
ENSG00000284543 LINC01226 -645172 sc-eQTL 8.14e-01 -0.0188 0.0802 0.588 cDC L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 2.01e-01 0.11 0.086 0.588 cDC L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 3.58e-01 0.0708 0.077 0.59 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 9.62e-01 -0.00408 0.086 0.59 cMono_IL1B L2
ENSG00000134644 PUM1 -204937 sc-eQTL 9.34e-02 0.0975 0.0578 0.59 cMono_IL1B L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 4.81e-01 0.0361 0.051 0.59 cMono_IL1B L2
ENSG00000162512 SDC3 -47704 sc-eQTL 4.24e-02 -0.195 0.0953 0.59 cMono_IL1B L2
ENSG00000162517 PEF1 -783842 sc-eQTL 9.23e-01 0.00757 0.0787 0.59 cMono_IL1B L2
ENSG00000168528 SERINC2 -548511 sc-eQTL 1.37e-01 0.145 0.0969 0.59 cMono_IL1B L2
ENSG00000284543 LINC01226 -645172 sc-eQTL 8.98e-01 -0.0111 0.0861 0.59 cMono_IL1B L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.89e-02 0.151 0.0797 0.59 cMono_IL1B L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 7.26e-01 0.0285 0.0812 0.59 cMono_S100A L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 8.09e-01 0.0232 0.0959 0.59 cMono_S100A L2
ENSG00000134644 PUM1 -204937 sc-eQTL 7.47e-02 0.123 0.0688 0.59 cMono_S100A L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 8.91e-01 -0.00732 0.0533 0.59 cMono_S100A L2
ENSG00000162512 SDC3 -47704 sc-eQTL 5.19e-01 -0.0595 0.0919 0.59 cMono_S100A L2
ENSG00000162517 PEF1 -783842 sc-eQTL 3.96e-01 -0.0706 0.083 0.59 cMono_S100A L2
ENSG00000168528 SERINC2 -548511 sc-eQTL 1.59e-01 0.137 0.097 0.59 cMono_S100A L2
ENSG00000284543 LINC01226 -645172 sc-eQTL 6.68e-01 -0.034 0.0791 0.59 cMono_S100A L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 4.47e-01 -0.0604 0.0794 0.59 cMono_S100A L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 6.51e-01 -0.0557 0.123 0.624 gdT L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 9.88e-01 -0.00161 0.106 0.624 gdT L2
ENSG00000134644 PUM1 -204937 sc-eQTL 9.22e-01 0.0106 0.109 0.624 gdT L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 7.52e-01 0.0374 0.118 0.624 gdT L2
ENSG00000162517 PEF1 -783842 sc-eQTL 5.20e-01 0.0697 0.108 0.624 gdT L2
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 4.91e-01 -0.0753 0.109 0.624 gdT L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 9.88e-01 -0.00166 0.106 0.624 gdT L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 7.93e-01 0.0238 0.0908 0.596 intMono L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 1.52e-01 0.14 0.0972 0.596 intMono L2
ENSG00000134644 PUM1 -204937 sc-eQTL 4.56e-01 -0.0618 0.0827 0.596 intMono L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 6.02e-01 0.0339 0.065 0.596 intMono L2
ENSG00000162512 SDC3 -47704 sc-eQTL 5.08e-01 -0.0589 0.0889 0.596 intMono L2
ENSG00000162517 PEF1 -783842 sc-eQTL 2.10e-02 0.215 0.0923 0.596 intMono L2
ENSG00000168528 SERINC2 -548511 sc-eQTL 1.02e-01 0.152 0.0926 0.596 intMono L2
ENSG00000284543 LINC01226 -645172 sc-eQTL 2.43e-01 -0.103 0.088 0.596 intMono L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 7.26e-02 0.158 0.0876 0.596 intMono L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 6.36e-01 -0.0395 0.0835 0.588 ncMono L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 2.21e-01 0.109 0.0887 0.588 ncMono L2
ENSG00000134644 PUM1 -204937 sc-eQTL 2.39e-01 -0.0857 0.0725 0.588 ncMono L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 5.52e-01 0.0393 0.0661 0.588 ncMono L2
ENSG00000162512 SDC3 -47704 sc-eQTL 3.63e-02 -0.155 0.0733 0.588 ncMono L2
ENSG00000162517 PEF1 -783842 sc-eQTL 5.93e-01 0.0455 0.0849 0.588 ncMono L2
ENSG00000168528 SERINC2 -548511 sc-eQTL 5.25e-01 0.0515 0.0808 0.588 ncMono L2
ENSG00000284543 LINC01226 -645172 sc-eQTL 3.03e-01 0.0833 0.0806 0.588 ncMono L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.30e-01 -0.0527 0.0837 0.588 ncMono L2
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.43e-01 -0.0575 0.0944 0.585 pDC L2
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 4.53e-01 -0.0778 0.104 0.585 pDC L2
ENSG00000134644 PUM1 -204937 sc-eQTL 3.21e-01 -0.0853 0.0857 0.585 pDC L2
ENSG00000162511 LAPTM5 103280 sc-eQTL 6.39e-01 0.0375 0.0799 0.585 pDC L2
ENSG00000162517 PEF1 -783842 sc-eQTL 4.05e-01 -0.0864 0.103 0.585 pDC L2
ENSG00000168528 SERINC2 -548511 sc-eQTL 6.47e-01 -0.0445 0.0969 0.585 pDC L2
ENSG00000284543 LINC01226 -645172 sc-eQTL 5.09e-01 0.0498 0.0752 0.585 pDC L2
ENSG00000287510 AL137857.1 129361 sc-eQTL 2.56e-02 0.196 0.0871 0.585 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -435734 sc-eQTL 5.80e-01 -0.0536 0.0967 0.59 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 9.52e-01 0.00485 0.0805 0.59 B_Memory LOneK1K
ENSG00000134644 PUM1 -204937 sc-eQTL 1.49e-01 -0.103 0.071 0.59 B_Memory LOneK1K
ENSG00000162510 MATN1 137469 sc-eQTL 6.95e-01 -0.0319 0.0813 0.59 B_Memory LOneK1K
ENSG00000162511 LAPTM5 103280 sc-eQTL 9.19e-01 -0.00519 0.0511 0.59 B_Memory LOneK1K
ENSG00000162517 PEF1 -783842 sc-eQTL 7.24e-01 -0.0299 0.0846 0.59 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 9.13e-01 0.0074 0.0676 0.59 B_Memory LOneK1K
ENSG00000287510 AL137857.1 129361 sc-eQTL 1.45e-01 0.107 0.0733 0.59 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -435734 sc-eQTL 1.35e-01 0.131 0.0873 0.59 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 9.23e-01 -0.00672 0.0694 0.59 B_Naive LOneK1K
ENSG00000134644 PUM1 -204937 sc-eQTL 6.16e-02 -0.122 0.0651 0.59 B_Naive LOneK1K
ENSG00000162510 MATN1 137469 sc-eQTL 7.81e-01 0.0176 0.0632 0.59 B_Naive LOneK1K
ENSG00000162511 LAPTM5 103280 sc-eQTL 3.93e-01 0.0381 0.0444 0.59 B_Naive LOneK1K
ENSG00000162517 PEF1 -783842 sc-eQTL 9.42e-01 0.00594 0.0813 0.59 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 6.07e-01 0.0296 0.0574 0.59 B_Naive LOneK1K
ENSG00000287510 AL137857.1 129361 sc-eQTL 5.08e-01 0.0453 0.0682 0.59 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -435734 sc-eQTL 3.46e-01 0.0691 0.0733 0.59 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 8.32e-01 0.0177 0.0832 0.59 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -204937 sc-eQTL 4.64e-02 0.105 0.0526 0.59 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 103280 sc-eQTL 5.34e-01 0.0291 0.0466 0.59 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -47704 sc-eQTL 4.65e-02 -0.189 0.0942 0.59 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -783842 sc-eQTL 4.31e-01 -0.0528 0.0668 0.59 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -548511 sc-eQTL 1.52e-01 0.14 0.0974 0.59 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -645172 sc-eQTL 9.90e-01 0.001 0.0802 0.59 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 129361 sc-eQTL 3.61e-01 0.0686 0.075 0.59 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -435734 sc-eQTL 4.92e-01 -0.0553 0.0803 0.591 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 4.26e-02 0.178 0.0871 0.591 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -204937 sc-eQTL 1.81e-01 -0.0962 0.0718 0.591 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 103280 sc-eQTL 9.45e-01 0.004 0.0577 0.591 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -47704 sc-eQTL 5.92e-02 -0.158 0.0835 0.591 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -783842 sc-eQTL 1.32e-01 0.115 0.0761 0.591 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -548511 sc-eQTL 5.63e-01 0.0506 0.0873 0.591 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -645172 sc-eQTL 6.05e-01 0.0429 0.0828 0.591 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 129361 sc-eQTL 6.77e-01 -0.0346 0.083 0.591 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -435734 sc-eQTL 3.51e-01 0.0848 0.0907 0.591 NK_CD56dim LOneK1K
ENSG00000121753 ADGRB2 -903839 sc-eQTL 2.72e-01 0.085 0.0772 0.591 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -435928 sc-eQTL 3.60e-01 -0.0569 0.062 0.591 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -204937 sc-eQTL 2.29e-02 -0.154 0.0672 0.591 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 103280 sc-eQTL 2.42e-01 0.0889 0.0758 0.591 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -783842 sc-eQTL 4.54e-01 0.0433 0.0577 0.591 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 142550 sc-eQTL 2.75e-01 0.0956 0.0875 0.591 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 129361 sc-eQTL 3.10e-03 0.222 0.0741 0.591 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121766 ZCCHC17 -435928 eQTL 3.97e-02 0.0351 0.0171 0.0 0.0 0.451

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 ZCCHC17 -435928 3.71e-07 3.23e-07 7.92e-08 4.1e-07 1.05e-07 1.13e-07 3.94e-07 7.12e-08 1.98e-07 1.46e-07 3.32e-07 1.72e-07 5.62e-07 1.54e-07 1.78e-07 1.39e-07 9.53e-08 2.93e-07 1.27e-07 1.08e-07 1.61e-07 2.45e-07 2.56e-07 1.27e-07 5.53e-07 1.94e-07 1.57e-07 2.01e-07 1.76e-07 1.89e-07 1.76e-07 6.7e-08 5.51e-08 2.97e-07 3.38e-07 8.17e-08 4.13e-07 5.53e-08 8.45e-08 1.86e-08 1.99e-07 3.27e-07 4.47e-08 5.87e-09 8.01e-08 4.53e-08 9.52e-08 8.88e-08 5.35e-08