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Genes within 1Mb (chr1:30846075:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.58e-01 -0.0542 0.122 0.889 B L1
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 2.57e-01 0.111 0.0977 0.889 B L1
ENSG00000134644 PUM1 -219916 sc-eQTL 4.67e-01 0.0599 0.0821 0.889 B L1
ENSG00000162510 MATN1 122490 sc-eQTL 6.43e-01 0.04 0.0864 0.889 B L1
ENSG00000162511 LAPTM5 88301 sc-eQTL 2.34e-01 0.0805 0.0675 0.889 B L1
ENSG00000162517 PEF1 -798821 sc-eQTL 8.30e-01 0.022 0.102 0.889 B L1
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 8.51e-01 -0.0149 0.0793 0.889 B L1
ENSG00000287510 AL137857.1 114382 sc-eQTL 8.18e-01 0.0217 0.0939 0.889 B L1
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.22e-01 -0.0516 0.105 0.889 CD4T L1
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 8.82e-01 -0.0121 0.0818 0.889 CD4T L1
ENSG00000134644 PUM1 -219916 sc-eQTL 6.80e-01 0.0301 0.0728 0.889 CD4T L1
ENSG00000162511 LAPTM5 88301 sc-eQTL 5.87e-01 0.0439 0.0807 0.889 CD4T L1
ENSG00000162517 PEF1 -798821 sc-eQTL 6.64e-02 0.154 0.0837 0.889 CD4T L1
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 9.11e-01 0.00811 0.0722 0.889 CD4T L1
ENSG00000287510 AL137857.1 114382 sc-eQTL 9.93e-02 0.142 0.0859 0.889 CD4T L1
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.73e-02 -0.248 0.135 0.889 CD8T L1
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 1.44e-01 -0.132 0.0899 0.889 CD8T L1
ENSG00000134644 PUM1 -219916 sc-eQTL 8.14e-02 0.138 0.079 0.889 CD8T L1
ENSG00000162511 LAPTM5 88301 sc-eQTL 1.90e-01 0.101 0.077 0.889 CD8T L1
ENSG00000162517 PEF1 -798821 sc-eQTL 9.74e-01 -0.0031 0.0952 0.889 CD8T L1
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 9.96e-02 0.149 0.09 0.889 CD8T L1
ENSG00000287510 AL137857.1 114382 sc-eQTL 6.19e-01 0.0566 0.114 0.889 CD8T L1
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.16e-01 0.0601 0.12 0.89 DC L1
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 9.88e-01 -0.00207 0.142 0.89 DC L1
ENSG00000134644 PUM1 -219916 sc-eQTL 2.51e-02 0.247 0.11 0.89 DC L1
ENSG00000162511 LAPTM5 88301 sc-eQTL 9.76e-01 -0.00236 0.0792 0.89 DC L1
ENSG00000162517 PEF1 -798821 sc-eQTL 2.34e-01 0.153 0.128 0.89 DC L1
ENSG00000168528 SERINC2 -563490 sc-eQTL 4.37e-01 0.102 0.13 0.89 DC L1
ENSG00000284543 LINC01226 -660151 sc-eQTL 6.19e-01 -0.0431 0.0865 0.89 DC L1
ENSG00000287510 AL137857.1 114382 sc-eQTL 3.06e-01 0.128 0.125 0.89 DC L1
ENSG00000060688 SNRNP40 -450713 sc-eQTL 2.96e-01 0.0968 0.0924 0.889 Mono L1
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 3.69e-02 -0.239 0.114 0.889 Mono L1
ENSG00000134644 PUM1 -219916 sc-eQTL 8.96e-01 -0.00962 0.0736 0.889 Mono L1
ENSG00000162511 LAPTM5 88301 sc-eQTL 1.45e-01 -0.0985 0.0674 0.889 Mono L1
ENSG00000162512 SDC3 -62683 sc-eQTL 1.80e-02 -0.306 0.128 0.889 Mono L1
ENSG00000162517 PEF1 -798821 sc-eQTL 2.93e-01 0.096 0.0911 0.889 Mono L1
ENSG00000168528 SERINC2 -563490 sc-eQTL 5.20e-02 0.27 0.138 0.889 Mono L1
ENSG00000284543 LINC01226 -660151 sc-eQTL 6.44e-01 0.0569 0.123 0.889 Mono L1
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.20e-01 -0.0867 0.107 0.889 Mono L1
ENSG00000060688 SNRNP40 -450713 sc-eQTL 8.42e-01 0.0258 0.129 0.888 NK L1
ENSG00000121753 ADGRB2 -918818 sc-eQTL 2.25e-01 0.135 0.111 0.888 NK L1
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 8.88e-01 0.0125 0.0884 0.888 NK L1
ENSG00000134644 PUM1 -219916 sc-eQTL 2.98e-02 0.201 0.0917 0.888 NK L1
ENSG00000162511 LAPTM5 88301 sc-eQTL 3.44e-03 0.31 0.105 0.888 NK L1
ENSG00000162517 PEF1 -798821 sc-eQTL 8.59e-01 -0.0139 0.0779 0.888 NK L1
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 4.65e-01 -0.0877 0.12 0.888 NK L1
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.16e-01 0.0901 0.111 0.888 NK L1
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.27e-01 -0.0472 0.0969 0.889 Other_T L1
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 7.53e-01 -0.0326 0.104 0.889 Other_T L1
ENSG00000134644 PUM1 -219916 sc-eQTL 3.48e-01 -0.0875 0.0929 0.889 Other_T L1
ENSG00000162511 LAPTM5 88301 sc-eQTL 7.68e-01 0.0225 0.0763 0.889 Other_T L1
ENSG00000162517 PEF1 -798821 sc-eQTL 2.44e-01 -0.119 0.102 0.889 Other_T L1
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 6.08e-01 0.0642 0.125 0.889 Other_T L1
ENSG00000287510 AL137857.1 114382 sc-eQTL 8.00e-01 -0.0331 0.13 0.889 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -450713 sc-eQTL 9.16e-01 -0.0157 0.148 0.878 B_Activated L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 7.01e-01 0.0576 0.149 0.878 B_Activated L2
ENSG00000134644 PUM1 -219916 sc-eQTL 3.49e-01 -0.13 0.139 0.878 B_Activated L2
ENSG00000162510 MATN1 122490 sc-eQTL 9.68e-01 0.00489 0.121 0.878 B_Activated L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 7.54e-01 0.0266 0.0847 0.878 B_Activated L2
ENSG00000162517 PEF1 -798821 sc-eQTL 8.90e-01 -0.0199 0.144 0.878 B_Activated L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 6.08e-01 -0.0703 0.137 0.878 B_Activated L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 7.75e-01 0.0346 0.121 0.878 B_Activated L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.90e-01 0.0592 0.148 0.888 B_Intermediate L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 2.94e-01 0.13 0.123 0.888 B_Intermediate L2
ENSG00000134644 PUM1 -219916 sc-eQTL 6.53e-01 0.0525 0.116 0.888 B_Intermediate L2
ENSG00000162510 MATN1 122490 sc-eQTL 5.91e-01 -0.0652 0.121 0.888 B_Intermediate L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 1.08e-01 0.119 0.074 0.888 B_Intermediate L2
ENSG00000162517 PEF1 -798821 sc-eQTL 3.70e-01 -0.124 0.138 0.888 B_Intermediate L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 9.80e-01 -0.00265 0.104 0.888 B_Intermediate L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 6.18e-01 -0.0583 0.117 0.888 B_Intermediate L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 3.15e-01 -0.142 0.141 0.89 B_Memory L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 8.68e-01 -0.0216 0.13 0.89 B_Memory L2
ENSG00000134644 PUM1 -219916 sc-eQTL 1.17e-02 -0.284 0.111 0.89 B_Memory L2
ENSG00000162510 MATN1 122490 sc-eQTL 8.44e-01 -0.0213 0.108 0.89 B_Memory L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 4.71e-01 0.0693 0.0959 0.89 B_Memory L2
ENSG00000162517 PEF1 -798821 sc-eQTL 4.68e-01 0.093 0.128 0.89 B_Memory L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 3.38e-01 0.105 0.11 0.89 B_Memory L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 9.02e-01 -0.0159 0.129 0.89 B_Memory L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.94e-01 0.0522 0.132 0.889 B_Naive1 L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 9.92e-02 0.188 0.114 0.889 B_Naive1 L2
ENSG00000134644 PUM1 -219916 sc-eQTL 8.84e-02 0.171 0.1 0.889 B_Naive1 L2
ENSG00000162510 MATN1 122490 sc-eQTL 9.89e-01 0.0014 0.102 0.889 B_Naive1 L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 2.19e-01 0.0841 0.0681 0.889 B_Naive1 L2
ENSG00000162517 PEF1 -798821 sc-eQTL 6.96e-01 -0.0471 0.12 0.889 B_Naive1 L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 3.30e-01 -0.0875 0.0896 0.889 B_Naive1 L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 7.50e-01 0.0354 0.111 0.889 B_Naive1 L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 2.65e-01 0.155 0.138 0.891 B_Naive2 L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 7.78e-01 0.0323 0.115 0.891 B_Naive2 L2
ENSG00000134644 PUM1 -219916 sc-eQTL 2.27e-01 0.135 0.112 0.891 B_Naive2 L2
ENSG00000162510 MATN1 122490 sc-eQTL 8.87e-01 0.0153 0.108 0.891 B_Naive2 L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 7.11e-01 0.0271 0.073 0.891 B_Naive2 L2
ENSG00000162517 PEF1 -798821 sc-eQTL 5.53e-01 0.0788 0.133 0.891 B_Naive2 L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 9.08e-01 0.0124 0.106 0.891 B_Naive2 L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 1.50e-01 -0.165 0.114 0.891 B_Naive2 L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 9.16e-01 0.0144 0.137 0.889 CD4_CTL L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 4.31e-02 -0.272 0.134 0.889 CD4_CTL L2
ENSG00000134644 PUM1 -219916 sc-eQTL 3.96e-01 0.112 0.132 0.889 CD4_CTL L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 8.20e-01 0.0269 0.118 0.889 CD4_CTL L2
ENSG00000162517 PEF1 -798821 sc-eQTL 6.99e-01 0.0469 0.121 0.889 CD4_CTL L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 8.77e-01 -0.0201 0.129 0.889 CD4_CTL L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 9.63e-01 -0.00523 0.114 0.889 CD4_CTL L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 2.93e-01 -0.115 0.109 0.889 CD4_Naive L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 9.20e-01 -0.00975 0.0968 0.889 CD4_Naive L2
ENSG00000134644 PUM1 -219916 sc-eQTL 9.89e-01 0.00105 0.0773 0.889 CD4_Naive L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 8.47e-01 0.016 0.0829 0.889 CD4_Naive L2
ENSG00000162517 PEF1 -798821 sc-eQTL 7.60e-02 0.161 0.0902 0.889 CD4_Naive L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 7.82e-01 0.0232 0.0841 0.889 CD4_Naive L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.62e-01 0.071 0.0965 0.889 CD4_Naive L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 9.35e-01 0.0111 0.137 0.889 CD4_TCM L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 6.09e-01 -0.0565 0.11 0.889 CD4_TCM L2
ENSG00000134644 PUM1 -219916 sc-eQTL 8.56e-01 -0.0177 0.0977 0.889 CD4_TCM L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 4.43e-01 0.0621 0.0809 0.889 CD4_TCM L2
ENSG00000162517 PEF1 -798821 sc-eQTL 3.83e-01 0.0948 0.108 0.889 CD4_TCM L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 7.69e-01 0.0302 0.103 0.889 CD4_TCM L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.58e-01 0.0851 0.114 0.889 CD4_TCM L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 2.13e-01 0.167 0.134 0.889 CD4_TEM L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 7.71e-01 -0.0373 0.128 0.889 CD4_TEM L2
ENSG00000134644 PUM1 -219916 sc-eQTL 1.80e-01 0.143 0.106 0.889 CD4_TEM L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 3.69e-01 0.0971 0.108 0.889 CD4_TEM L2
ENSG00000162517 PEF1 -798821 sc-eQTL 7.49e-01 0.0387 0.121 0.889 CD4_TEM L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 2.78e-01 0.137 0.126 0.889 CD4_TEM L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 3.78e-02 -0.257 0.123 0.889 CD4_TEM L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 9.46e-01 0.01 0.146 0.889 CD8_CTL L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 3.42e-01 -0.107 0.112 0.889 CD8_CTL L2
ENSG00000134644 PUM1 -219916 sc-eQTL 1.73e-01 0.148 0.108 0.889 CD8_CTL L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 4.95e-01 0.0824 0.12 0.889 CD8_CTL L2
ENSG00000162517 PEF1 -798821 sc-eQTL 4.44e-01 0.0805 0.105 0.889 CD8_CTL L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 6.47e-01 0.0581 0.127 0.889 CD8_CTL L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 2.51e-01 0.137 0.119 0.889 CD8_CTL L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 1.25e-02 -0.338 0.134 0.889 CD8_Naive L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 6.83e-01 -0.0481 0.118 0.889 CD8_Naive L2
ENSG00000134644 PUM1 -219916 sc-eQTL 5.29e-02 0.183 0.0938 0.889 CD8_Naive L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 6.91e-01 0.0361 0.0906 0.889 CD8_Naive L2
ENSG00000162517 PEF1 -798821 sc-eQTL 4.44e-01 -0.0966 0.126 0.889 CD8_Naive L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 1.80e-01 0.152 0.113 0.889 CD8_Naive L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 6.40e-01 0.0577 0.123 0.889 CD8_Naive L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.15e-01 0.0762 0.151 0.894 CD8_TCM L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 7.31e-03 -0.369 0.136 0.894 CD8_TCM L2
ENSG00000134644 PUM1 -219916 sc-eQTL 6.68e-01 0.0559 0.13 0.894 CD8_TCM L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 3.08e-01 -0.139 0.136 0.894 CD8_TCM L2
ENSG00000162517 PEF1 -798821 sc-eQTL 6.39e-01 -0.0655 0.139 0.894 CD8_TCM L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 9.82e-01 -0.00282 0.126 0.894 CD8_TCM L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 3.97e-01 -0.108 0.127 0.894 CD8_TCM L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 4.60e-01 0.103 0.139 0.886 CD8_TEM L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 4.01e-01 0.112 0.133 0.886 CD8_TEM L2
ENSG00000134644 PUM1 -219916 sc-eQTL 6.62e-01 0.0597 0.136 0.886 CD8_TEM L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 2.51e-02 0.286 0.127 0.886 CD8_TEM L2
ENSG00000162517 PEF1 -798821 sc-eQTL 8.75e-01 -0.0191 0.121 0.886 CD8_TEM L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 8.88e-01 0.0188 0.133 0.886 CD8_TEM L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 1.52e-01 0.172 0.12 0.886 CD8_TEM L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 7.53e-01 -0.0453 0.144 0.89 MAIT L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 1.98e-01 -0.164 0.127 0.89 MAIT L2
ENSG00000134644 PUM1 -219916 sc-eQTL 3.17e-01 -0.122 0.122 0.89 MAIT L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 6.57e-01 0.0513 0.115 0.89 MAIT L2
ENSG00000162517 PEF1 -798821 sc-eQTL 5.35e-01 -0.0787 0.127 0.89 MAIT L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 6.80e-01 0.053 0.129 0.89 MAIT L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.81e-01 0.0934 0.132 0.89 MAIT L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 8.08e-01 0.0354 0.146 0.884 NK_CD56bright L2
ENSG00000121753 ADGRB2 -918818 sc-eQTL 6.78e-01 0.0474 0.114 0.884 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 5.13e-01 -0.0805 0.123 0.884 NK_CD56bright L2
ENSG00000134644 PUM1 -219916 sc-eQTL 5.51e-01 0.0771 0.129 0.884 NK_CD56bright L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 4.02e-01 0.107 0.127 0.884 NK_CD56bright L2
ENSG00000162517 PEF1 -798821 sc-eQTL 9.71e-01 -0.0045 0.124 0.884 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 5.37e-01 -0.079 0.128 0.884 NK_CD56bright L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 1.97e-01 0.163 0.126 0.884 NK_CD56bright L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 7.70e-01 0.0399 0.137 0.888 NK_CD56dim L2
ENSG00000121753 ADGRB2 -918818 sc-eQTL 6.94e-03 0.322 0.118 0.888 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 8.72e-01 0.0163 0.101 0.888 NK_CD56dim L2
ENSG00000134644 PUM1 -219916 sc-eQTL 1.90e-01 0.136 0.103 0.888 NK_CD56dim L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 3.43e-03 0.321 0.108 0.888 NK_CD56dim L2
ENSG00000162517 PEF1 -798821 sc-eQTL 9.38e-01 0.00762 0.0984 0.888 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 5.49e-01 -0.0832 0.138 0.888 NK_CD56dim L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 5.86e-01 0.0623 0.114 0.888 NK_CD56dim L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 7.50e-01 -0.0457 0.143 0.888 NK_HLA L2
ENSG00000121753 ADGRB2 -918818 sc-eQTL 3.14e-01 0.115 0.113 0.888 NK_HLA L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 4.17e-01 -0.104 0.128 0.888 NK_HLA L2
ENSG00000134644 PUM1 -219916 sc-eQTL 5.44e-01 0.0757 0.125 0.888 NK_HLA L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 4.88e-02 0.234 0.118 0.888 NK_HLA L2
ENSG00000162517 PEF1 -798821 sc-eQTL 8.14e-01 -0.0316 0.134 0.888 NK_HLA L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 5.20e-01 -0.0815 0.126 0.888 NK_HLA L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 7.24e-01 -0.0433 0.122 0.888 NK_HLA L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 2.76e-01 0.144 0.132 0.888 NK_cytokine L2
ENSG00000121753 ADGRB2 -918818 sc-eQTL 4.19e-01 -0.0966 0.119 0.888 NK_cytokine L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 3.66e-01 0.0933 0.103 0.888 NK_cytokine L2
ENSG00000134644 PUM1 -219916 sc-eQTL 3.90e-01 0.0958 0.111 0.888 NK_cytokine L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 4.50e-02 0.245 0.122 0.888 NK_cytokine L2
ENSG00000162517 PEF1 -798821 sc-eQTL 6.14e-01 -0.0527 0.105 0.888 NK_cytokine L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 6.22e-01 0.0642 0.13 0.888 NK_cytokine L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 3.28e-01 0.119 0.121 0.888 NK_cytokine L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 7.12e-01 0.0507 0.137 0.863 PB L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 4.59e-01 -0.118 0.158 0.863 PB L2
ENSG00000134644 PUM1 -219916 sc-eQTL 2.07e-01 0.174 0.137 0.863 PB L2
ENSG00000162510 MATN1 122490 sc-eQTL 4.57e-01 0.0958 0.128 0.863 PB L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 2.98e-01 0.0956 0.0915 0.863 PB L2
ENSG00000162517 PEF1 -798821 sc-eQTL 3.72e-01 -0.126 0.141 0.863 PB L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 2.43e-01 0.147 0.125 0.863 PB L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 6.85e-02 -0.243 0.132 0.863 PB L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 1.49e-01 -0.151 0.104 0.887 Pro_T L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 6.80e-01 -0.0547 0.133 0.887 Pro_T L2
ENSG00000134644 PUM1 -219916 sc-eQTL 6.32e-01 0.0593 0.124 0.887 Pro_T L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 6.25e-01 0.0434 0.0887 0.887 Pro_T L2
ENSG00000162517 PEF1 -798821 sc-eQTL 2.53e-01 -0.149 0.13 0.887 Pro_T L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 1.66e-01 0.172 0.123 0.887 Pro_T L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 7.04e-01 -0.0433 0.114 0.887 Pro_T L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 1.65e-01 0.192 0.138 0.889 Treg L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 9.54e-01 0.00775 0.134 0.889 Treg L2
ENSG00000134644 PUM1 -219916 sc-eQTL 9.87e-02 0.177 0.107 0.889 Treg L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 5.31e-02 0.237 0.122 0.889 Treg L2
ENSG00000162517 PEF1 -798821 sc-eQTL 8.53e-01 -0.0246 0.133 0.889 Treg L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 2.89e-01 -0.133 0.125 0.889 Treg L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.47e-01 0.095 0.125 0.889 Treg L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 3.22e-01 0.137 0.138 0.888 cDC L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 6.73e-01 -0.0631 0.15 0.888 cDC L2
ENSG00000134644 PUM1 -219916 sc-eQTL 5.93e-02 0.242 0.127 0.888 cDC L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 8.33e-01 -0.019 0.0901 0.888 cDC L2
ENSG00000162517 PEF1 -798821 sc-eQTL 1.69e-01 0.179 0.13 0.888 cDC L2
ENSG00000168528 SERINC2 -563490 sc-eQTL 3.07e-01 0.118 0.115 0.888 cDC L2
ENSG00000284543 LINC01226 -660151 sc-eQTL 3.74e-01 -0.101 0.113 0.888 cDC L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 6.97e-01 0.0476 0.122 0.888 cDC L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 1.23e-01 0.171 0.11 0.889 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 6.48e-01 0.0567 0.124 0.889 cMono_IL1B L2
ENSG00000134644 PUM1 -219916 sc-eQTL 7.23e-01 0.0298 0.0839 0.889 cMono_IL1B L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 1.56e-01 -0.104 0.0733 0.889 cMono_IL1B L2
ENSG00000162512 SDC3 -62683 sc-eQTL 8.77e-01 -0.0215 0.139 0.889 cMono_IL1B L2
ENSG00000162517 PEF1 -798821 sc-eQTL 1.56e-01 0.161 0.113 0.889 cMono_IL1B L2
ENSG00000168528 SERINC2 -563490 sc-eQTL 4.05e-02 0.286 0.139 0.889 cMono_IL1B L2
ENSG00000284543 LINC01226 -660151 sc-eQTL 7.88e-01 0.0334 0.124 0.889 cMono_IL1B L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 3.60e-01 -0.106 0.116 0.889 cMono_IL1B L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 7.83e-01 -0.0322 0.117 0.889 cMono_S100A L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 1.37e-03 -0.436 0.135 0.889 cMono_S100A L2
ENSG00000134644 PUM1 -219916 sc-eQTL 6.61e-01 0.0438 0.0996 0.889 cMono_S100A L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 1.99e-01 -0.0983 0.0763 0.889 cMono_S100A L2
ENSG00000162512 SDC3 -62683 sc-eQTL 9.12e-01 -0.0147 0.132 0.889 cMono_S100A L2
ENSG00000162517 PEF1 -798821 sc-eQTL 8.90e-01 0.0165 0.119 0.889 cMono_S100A L2
ENSG00000168528 SERINC2 -563490 sc-eQTL 3.08e-01 0.143 0.14 0.889 cMono_S100A L2
ENSG00000284543 LINC01226 -660151 sc-eQTL 4.15e-02 0.231 0.113 0.889 cMono_S100A L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 3.15e-01 -0.115 0.114 0.889 cMono_S100A L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.01e-01 0.0972 0.186 0.897 gdT L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 3.84e-01 -0.139 0.159 0.897 gdT L2
ENSG00000134644 PUM1 -219916 sc-eQTL 3.21e-01 -0.163 0.164 0.897 gdT L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 2.13e-01 0.222 0.178 0.897 gdT L2
ENSG00000162517 PEF1 -798821 sc-eQTL 8.32e-01 -0.0348 0.164 0.897 gdT L2
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 8.16e-01 -0.0385 0.165 0.897 gdT L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 3.08e-01 0.163 0.159 0.897 gdT L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 3.92e-01 0.112 0.131 0.887 intMono L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 3.68e-01 -0.127 0.141 0.887 intMono L2
ENSG00000134644 PUM1 -219916 sc-eQTL 8.11e-01 -0.0287 0.12 0.887 intMono L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 1.99e-01 -0.12 0.0935 0.887 intMono L2
ENSG00000162512 SDC3 -62683 sc-eQTL 3.65e-02 -0.268 0.127 0.887 intMono L2
ENSG00000162517 PEF1 -798821 sc-eQTL 7.72e-01 -0.0392 0.135 0.887 intMono L2
ENSG00000168528 SERINC2 -563490 sc-eQTL 1.08e-01 0.216 0.134 0.887 intMono L2
ENSG00000284543 LINC01226 -660151 sc-eQTL 5.92e-01 -0.0684 0.127 0.887 intMono L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 6.44e-01 0.059 0.127 0.887 intMono L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.60e-01 -0.0536 0.122 0.889 ncMono L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 3.23e-01 -0.128 0.13 0.889 ncMono L2
ENSG00000134644 PUM1 -219916 sc-eQTL 1.53e-01 -0.152 0.106 0.889 ncMono L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 7.73e-01 -0.0278 0.0964 0.889 ncMono L2
ENSG00000162512 SDC3 -62683 sc-eQTL 2.28e-01 -0.13 0.108 0.889 ncMono L2
ENSG00000162517 PEF1 -798821 sc-eQTL 3.01e-01 0.128 0.124 0.889 ncMono L2
ENSG00000168528 SERINC2 -563490 sc-eQTL 3.94e-02 0.242 0.117 0.889 ncMono L2
ENSG00000284543 LINC01226 -660151 sc-eQTL 9.67e-01 0.00481 0.118 0.889 ncMono L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.39e-01 0.0946 0.122 0.889 ncMono L2
ENSG00000060688 SNRNP40 -450713 sc-eQTL 1.22e-01 -0.236 0.152 0.907 pDC L2
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 3.73e-01 0.15 0.167 0.907 pDC L2
ENSG00000134644 PUM1 -219916 sc-eQTL 5.00e-01 0.0941 0.139 0.907 pDC L2
ENSG00000162511 LAPTM5 88301 sc-eQTL 1.12e-01 0.205 0.128 0.907 pDC L2
ENSG00000162517 PEF1 -798821 sc-eQTL 3.98e-01 -0.142 0.167 0.907 pDC L2
ENSG00000168528 SERINC2 -563490 sc-eQTL 9.13e-01 -0.0172 0.157 0.907 pDC L2
ENSG00000284543 LINC01226 -660151 sc-eQTL 6.88e-01 -0.0491 0.122 0.907 pDC L2
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.56e-01 0.107 0.143 0.907 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -450713 sc-eQTL 3.97e-01 -0.119 0.14 0.889 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 6.78e-01 0.0485 0.116 0.889 B_Memory LOneK1K
ENSG00000134644 PUM1 -219916 sc-eQTL 1.69e-01 -0.142 0.103 0.889 B_Memory LOneK1K
ENSG00000162510 MATN1 122490 sc-eQTL 7.96e-01 -0.0305 0.118 0.889 B_Memory LOneK1K
ENSG00000162511 LAPTM5 88301 sc-eQTL 2.18e-01 0.0911 0.0736 0.889 B_Memory LOneK1K
ENSG00000162517 PEF1 -798821 sc-eQTL 9.16e-01 -0.0129 0.122 0.889 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 5.47e-01 0.0589 0.0977 0.889 B_Memory LOneK1K
ENSG00000287510 AL137857.1 114382 sc-eQTL 7.75e-01 0.0305 0.107 0.889 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.94e-01 0.0509 0.129 0.889 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 1.24e-01 0.157 0.102 0.889 B_Naive LOneK1K
ENSG00000134644 PUM1 -219916 sc-eQTL 1.75e-02 0.228 0.0954 0.889 B_Naive LOneK1K
ENSG00000162510 MATN1 122490 sc-eQTL 3.39e-01 0.089 0.0929 0.889 B_Naive LOneK1K
ENSG00000162511 LAPTM5 88301 sc-eQTL 3.09e-01 0.0667 0.0654 0.889 B_Naive LOneK1K
ENSG00000162517 PEF1 -798821 sc-eQTL 5.84e-01 -0.0656 0.12 0.889 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 2.65e-01 -0.0944 0.0844 0.889 B_Naive LOneK1K
ENSG00000287510 AL137857.1 114382 sc-eQTL 7.78e-01 -0.0284 0.101 0.889 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -450713 sc-eQTL 3.46e-01 0.0997 0.106 0.889 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 8.44e-02 -0.206 0.119 0.889 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -219916 sc-eQTL 7.28e-01 0.0267 0.0764 0.889 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 88301 sc-eQTL 6.73e-02 -0.123 0.0667 0.889 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -62683 sc-eQTL 8.89e-01 0.0192 0.137 0.889 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -798821 sc-eQTL 3.62e-01 0.0878 0.0962 0.889 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -563490 sc-eQTL 9.29e-02 0.236 0.14 0.889 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -660151 sc-eQTL 4.51e-01 0.0873 0.115 0.889 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 114382 sc-eQTL 2.54e-01 -0.124 0.108 0.889 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -450713 sc-eQTL 8.92e-01 0.0156 0.115 0.888 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 9.33e-02 -0.211 0.125 0.888 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -219916 sc-eQTL 5.16e-01 -0.0672 0.103 0.888 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 88301 sc-eQTL 4.39e-01 -0.064 0.0825 0.888 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -62683 sc-eQTL 1.51e-03 -0.379 0.118 0.888 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -798821 sc-eQTL 6.00e-01 0.0576 0.11 0.888 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -563490 sc-eQTL 1.48e-01 0.181 0.125 0.888 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -660151 sc-eQTL 8.25e-01 -0.0264 0.119 0.888 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 114382 sc-eQTL 4.25e-01 0.0949 0.119 0.888 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -450713 sc-eQTL 6.75e-01 0.0547 0.13 0.888 NK_CD56dim LOneK1K
ENSG00000121753 ADGRB2 -918818 sc-eQTL 1.71e-01 0.152 0.11 0.888 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -450907 sc-eQTL 9.15e-01 0.00954 0.089 0.888 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -219916 sc-eQTL 9.53e-02 0.162 0.0968 0.888 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 88301 sc-eQTL 1.17e-02 0.273 0.107 0.888 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -798821 sc-eQTL 5.57e-01 -0.0486 0.0827 0.888 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 127571 sc-eQTL 4.44e-01 -0.0963 0.125 0.888 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 114382 sc-eQTL 3.08e-01 0.11 0.108 0.888 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168528 SERINC2 -563490 eQTL 0.00449 0.16 0.0562 0.0 0.0 0.127

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162517 \N -798821 2.61e-07 1.16e-07 4.48e-08 1.89e-07 8.83e-08 9.61e-08 1.44e-07 5.19e-08 1.41e-07 4.4e-08 1.62e-07 8.03e-08 1.41e-07 6.38e-08 5.53e-08 7.26e-08 3.94e-08 1.14e-07 5.97e-08 4.42e-08 1.05e-07 1.26e-07 1.26e-07 4.13e-08 1.37e-07 1.14e-07 1.06e-07 9.15e-08 1.03e-07 1.12e-07 9.73e-08 4.22e-08 3.09e-08 8.25e-08 6.67e-08 3.97e-08 5.37e-08 9.61e-08 6.56e-08 3.37e-08 4.35e-08 1.36e-07 3.91e-08 7.61e-09 6.92e-08 1.83e-08 1.23e-07 4.2e-09 4.77e-08
ENSG00000168528 SERINC2 -563490 2.67e-07 1.33e-07 6.45e-08 2.49e-07 9.8e-08 8.33e-08 2.1e-07 5.62e-08 1.45e-07 6.4e-08 1.59e-07 8.59e-08 1.95e-07 7.95e-08 5.98e-08 7.23e-08 4.31e-08 1.4e-07 7.11e-08 5.33e-08 1.25e-07 1.31e-07 1.5e-07 2.91e-08 2.17e-07 1.23e-07 1.19e-07 1.01e-07 1.24e-07 1e-07 1.07e-07 2.93e-08 3.73e-08 9.52e-08 5.5e-08 3.14e-08 5.26e-08 9.03e-08 6.39e-08 3.99e-08 5.24e-08 1.62e-07 5.2e-08 1.14e-08 3.84e-08 8.31e-09 1.2e-07 3.8e-09 4.85e-08