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Genes within 1Mb (chr1:30798254:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -498534 sc-eQTL 9.45e-01 0.0155 0.223 0.054 B_Activated L2
ENSG00000121766 ZCCHC17 -498728 sc-eQTL 8.80e-01 -0.0341 0.225 0.054 B_Activated L2
ENSG00000134644 PUM1 -267737 sc-eQTL 3.04e-01 0.215 0.209 0.054 B_Activated L2
ENSG00000162510 MATN1 74669 sc-eQTL 7.57e-01 -0.0566 0.183 0.054 B_Activated L2
ENSG00000162511 LAPTM5 40480 sc-eQTL 1.56e-02 -0.306 0.125 0.054 B_Activated L2
ENSG00000162517 PEF1 -846642 sc-eQTL 4.75e-01 0.155 0.217 0.054 B_Activated L2
ENSG00000186056 MATN1-AS1 79750 sc-eQTL 9.21e-01 -0.0204 0.206 0.054 B_Activated L2
ENSG00000287510 AL137857.1 66561 sc-eQTL 4.95e-01 0.124 0.182 0.054 B_Activated L2
ENSG00000060688 SNRNP40 -498534 sc-eQTL 2.64e-01 -0.228 0.203 0.05 CD4_CTL L2
ENSG00000121766 ZCCHC17 -498728 sc-eQTL 3.39e-01 -0.192 0.2 0.05 CD4_CTL L2
ENSG00000134644 PUM1 -267737 sc-eQTL 7.92e-01 -0.0519 0.197 0.05 CD4_CTL L2
ENSG00000162511 LAPTM5 40480 sc-eQTL 9.04e-01 -0.0211 0.175 0.05 CD4_CTL L2
ENSG00000162517 PEF1 -846642 sc-eQTL 8.15e-01 0.0422 0.18 0.05 CD4_CTL L2
ENSG00000186056 MATN1-AS1 79750 sc-eQTL 9.41e-01 -0.0141 0.192 0.05 CD4_CTL L2
ENSG00000287510 AL137857.1 66561 sc-eQTL 7.44e-01 0.0553 0.169 0.05 CD4_CTL L2
ENSG00000060688 SNRNP40 -498534 sc-eQTL 9.67e-03 0.544 0.208 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 -498728 sc-eQTL 2.75e-02 0.445 0.2 0.05 CD8_TEM L2
ENSG00000134644 PUM1 -267737 sc-eQTL 4.18e-01 -0.168 0.207 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 40480 sc-eQTL 3.45e-01 0.184 0.195 0.05 CD8_TEM L2
ENSG00000162517 PEF1 -846642 sc-eQTL 6.85e-01 0.0746 0.184 0.05 CD8_TEM L2
ENSG00000186056 MATN1-AS1 79750 sc-eQTL 1.20e-01 -0.314 0.201 0.05 CD8_TEM L2
ENSG00000287510 AL137857.1 66561 sc-eQTL 1.76e-01 -0.248 0.182 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 -498534 sc-eQTL 8.22e-01 -0.0483 0.214 0.051 NK_CD56bright L2
ENSG00000121753 ADGRB2 -966639 sc-eQTL 6.81e-02 -0.305 0.166 0.051 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -498728 sc-eQTL 5.21e-01 0.116 0.181 0.051 NK_CD56bright L2
ENSG00000134644 PUM1 -267737 sc-eQTL 4.53e-01 -0.142 0.19 0.051 NK_CD56bright L2
ENSG00000162511 LAPTM5 40480 sc-eQTL 9.15e-01 0.0199 0.187 0.051 NK_CD56bright L2
ENSG00000162517 PEF1 -846642 sc-eQTL 9.72e-01 -0.00635 0.182 0.051 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 79750 sc-eQTL 6.44e-01 0.0869 0.188 0.051 NK_CD56bright L2
ENSG00000287510 AL137857.1 66561 sc-eQTL 2.96e-01 -0.194 0.185 0.051 NK_CD56bright L2
ENSG00000060688 SNRNP40 -498534 sc-eQTL 3.78e-01 -0.188 0.213 0.053 NK_HLA L2
ENSG00000121753 ADGRB2 -966639 sc-eQTL 2.18e-01 0.209 0.169 0.053 NK_HLA L2
ENSG00000121766 ZCCHC17 -498728 sc-eQTL 8.89e-02 0.324 0.189 0.053 NK_HLA L2
ENSG00000134644 PUM1 -267737 sc-eQTL 8.67e-02 0.318 0.185 0.053 NK_HLA L2
ENSG00000162511 LAPTM5 40480 sc-eQTL 1.77e-01 0.239 0.177 0.053 NK_HLA L2
ENSG00000162517 PEF1 -846642 sc-eQTL 7.60e-01 0.0611 0.2 0.053 NK_HLA L2
ENSG00000186056 MATN1-AS1 79750 sc-eQTL 9.62e-01 0.00904 0.189 0.053 NK_HLA L2
ENSG00000287510 AL137857.1 66561 sc-eQTL 4.19e-01 -0.148 0.182 0.053 NK_HLA L2
ENSG00000060688 SNRNP40 -498534 sc-eQTL 1.44e-01 -0.348 0.237 0.052 PB L2
ENSG00000121766 ZCCHC17 -498728 sc-eQTL 3.14e-01 0.279 0.276 0.052 PB L2
ENSG00000134644 PUM1 -267737 sc-eQTL 8.94e-01 0.0322 0.241 0.052 PB L2
ENSG00000162510 MATN1 74669 sc-eQTL 3.07e-01 0.229 0.223 0.052 PB L2
ENSG00000162511 LAPTM5 40480 sc-eQTL 4.74e-01 -0.115 0.16 0.052 PB L2
ENSG00000162517 PEF1 -846642 sc-eQTL 7.56e-01 -0.0767 0.247 0.052 PB L2
ENSG00000186056 MATN1-AS1 79750 sc-eQTL 8.26e-01 -0.0484 0.219 0.052 PB L2
ENSG00000287510 AL137857.1 66561 sc-eQTL 2.96e-01 -0.244 0.232 0.052 PB L2
ENSG00000060688 SNRNP40 -498534 sc-eQTL 5.20e-01 -0.128 0.199 0.054 cDC L2
ENSG00000121766 ZCCHC17 -498728 sc-eQTL 4.32e-02 -0.435 0.213 0.054 cDC L2
ENSG00000134644 PUM1 -267737 sc-eQTL 5.65e-01 0.107 0.185 0.054 cDC L2
ENSG00000162511 LAPTM5 40480 sc-eQTL 4.75e-01 -0.0928 0.13 0.054 cDC L2
ENSG00000162517 PEF1 -846642 sc-eQTL 7.00e-01 0.0727 0.188 0.054 cDC L2
ENSG00000168528 SERINC2 -611311 sc-eQTL 6.53e-01 -0.0752 0.167 0.054 cDC L2
ENSG00000284543 LINC01226 -707972 sc-eQTL 9.20e-01 0.0165 0.164 0.054 cDC L2
ENSG00000287510 AL137857.1 66561 sc-eQTL 8.13e-02 -0.307 0.175 0.054 cDC L2
ENSG00000060688 SNRNP40 -498534 sc-eQTL 4.81e-01 0.136 0.192 0.051 intMono L2
ENSG00000121766 ZCCHC17 -498728 sc-eQTL 4.83e-01 0.145 0.207 0.051 intMono L2
ENSG00000134644 PUM1 -267737 sc-eQTL 8.37e-01 -0.0361 0.175 0.051 intMono L2
ENSG00000162511 LAPTM5 40480 sc-eQTL 7.55e-01 -0.0429 0.138 0.051 intMono L2
ENSG00000162512 SDC3 -110504 sc-eQTL 4.48e-01 -0.143 0.188 0.051 intMono L2
ENSG00000162517 PEF1 -846642 sc-eQTL 7.51e-03 0.525 0.195 0.051 intMono L2
ENSG00000168528 SERINC2 -611311 sc-eQTL 3.26e-01 -0.194 0.197 0.051 intMono L2
ENSG00000284543 LINC01226 -707972 sc-eQTL 7.60e-01 0.0572 0.187 0.051 intMono L2
ENSG00000287510 AL137857.1 66561 sc-eQTL 5.50e-01 -0.112 0.187 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000142910 TINAGL1 -778231 pQTL 0.0257 0.0686 0.0307 0.00135 0.0 0.0665
ENSG00000162511 LAPTM5 40480 eQTL 0.00916 0.0508 0.0194 0.0 0.0 0.0667

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina