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Genes within 1Mb (chr1:30773963:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -522825 sc-eQTL 7.92e-01 0.0211 0.0799 0.596 B L1
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 6.10e-01 -0.0327 0.064 0.596 B L1
ENSG00000134644 PUM1 -292028 sc-eQTL 6.40e-01 0.0252 0.0537 0.596 B L1
ENSG00000162510 MATN1 50378 sc-eQTL 4.18e-03 -0.16 0.0554 0.596 B L1
ENSG00000162511 LAPTM5 16189 sc-eQTL 6.71e-01 0.0188 0.0442 0.596 B L1
ENSG00000162517 PEF1 -870933 sc-eQTL 7.89e-01 -0.0179 0.0667 0.596 B L1
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 2.28e-02 -0.117 0.0512 0.596 B L1
ENSG00000287510 AL137857.1 42270 sc-eQTL 8.94e-01 -0.00821 0.0613 0.596 B L1
ENSG00000060688 SNRNP40 -522825 sc-eQTL 9.20e-01 0.00686 0.068 0.596 CD4T L1
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 5.96e-01 0.0282 0.0531 0.596 CD4T L1
ENSG00000134644 PUM1 -292028 sc-eQTL 1.92e-01 0.0616 0.0471 0.596 CD4T L1
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.63e-03 -0.163 0.0512 0.596 CD4T L1
ENSG00000162517 PEF1 -870933 sc-eQTL 8.97e-01 -0.00712 0.0548 0.596 CD4T L1
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 5.73e-01 0.0264 0.0468 0.596 CD4T L1
ENSG00000287510 AL137857.1 42270 sc-eQTL 1.90e-01 0.0735 0.0559 0.596 CD4T L1
ENSG00000060688 SNRNP40 -522825 sc-eQTL 9.28e-01 0.00814 0.0906 0.596 CD8T L1
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 2.63e-01 -0.0674 0.0601 0.596 CD8T L1
ENSG00000134644 PUM1 -292028 sc-eQTL 4.17e-01 0.0431 0.053 0.596 CD8T L1
ENSG00000162511 LAPTM5 16189 sc-eQTL 9.23e-01 -0.00499 0.0515 0.596 CD8T L1
ENSG00000162517 PEF1 -870933 sc-eQTL 2.79e-01 0.0688 0.0633 0.596 CD8T L1
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 4.62e-01 -0.0445 0.0603 0.596 CD8T L1
ENSG00000287510 AL137857.1 42270 sc-eQTL 8.79e-01 -0.0115 0.0759 0.596 CD8T L1
ENSG00000060688 SNRNP40 -522825 sc-eQTL 6.75e-01 -0.0338 0.0807 0.595 DC L1
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 1.86e-01 -0.126 0.0951 0.595 DC L1
ENSG00000134644 PUM1 -292028 sc-eQTL 8.80e-01 0.0113 0.0748 0.595 DC L1
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.19e-01 0.0832 0.0531 0.595 DC L1
ENSG00000162517 PEF1 -870933 sc-eQTL 2.07e-01 0.109 0.0863 0.595 DC L1
ENSG00000168528 SERINC2 -635602 sc-eQTL 7.69e-01 0.0259 0.0881 0.595 DC L1
ENSG00000284543 LINC01226 -732263 sc-eQTL 6.52e-01 0.0264 0.0583 0.595 DC L1
ENSG00000287510 AL137857.1 42270 sc-eQTL 9.85e-01 0.00156 0.0845 0.595 DC L1
ENSG00000060688 SNRNP40 -522825 sc-eQTL 7.38e-01 -0.0208 0.0619 0.596 Mono L1
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.14e-01 0.00827 0.0768 0.596 Mono L1
ENSG00000134644 PUM1 -292028 sc-eQTL 4.71e-01 -0.0355 0.0492 0.596 Mono L1
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.21e-01 0.0701 0.045 0.596 Mono L1
ENSG00000162512 SDC3 -134795 sc-eQTL 8.07e-01 -0.0212 0.087 0.596 Mono L1
ENSG00000162517 PEF1 -870933 sc-eQTL 5.64e-01 -0.0353 0.061 0.596 Mono L1
ENSG00000168528 SERINC2 -635602 sc-eQTL 7.30e-01 -0.0323 0.0934 0.596 Mono L1
ENSG00000284543 LINC01226 -732263 sc-eQTL 8.61e-01 0.0144 0.0823 0.596 Mono L1
ENSG00000287510 AL137857.1 42270 sc-eQTL 2.48e-01 0.083 0.0717 0.596 Mono L1
ENSG00000060688 SNRNP40 -522825 sc-eQTL 3.32e-01 -0.0842 0.0866 0.594 NK L1
ENSG00000121753 ADGRB2 -990930 sc-eQTL 3.02e-01 0.0771 0.0745 0.594 NK L1
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 3.10e-01 -0.0603 0.0593 0.594 NK L1
ENSG00000134644 PUM1 -292028 sc-eQTL 9.61e-01 -0.00305 0.0623 0.594 NK L1
ENSG00000162511 LAPTM5 16189 sc-eQTL 2.05e-06 0.332 0.068 0.594 NK L1
ENSG00000162517 PEF1 -870933 sc-eQTL 9.57e-02 0.0871 0.052 0.594 NK L1
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 1.88e-01 -0.106 0.0803 0.594 NK L1
ENSG00000287510 AL137857.1 42270 sc-eQTL 1.93e-02 0.173 0.0735 0.594 NK L1
ENSG00000060688 SNRNP40 -522825 sc-eQTL 1.51e-01 0.0945 0.0657 0.596 Other_T L1
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 8.45e-01 -0.0138 0.0705 0.596 Other_T L1
ENSG00000134644 PUM1 -292028 sc-eQTL 7.94e-01 0.0166 0.0634 0.596 Other_T L1
ENSG00000162511 LAPTM5 16189 sc-eQTL 3.92e-01 -0.0445 0.0519 0.596 Other_T L1
ENSG00000162517 PEF1 -870933 sc-eQTL 2.59e-01 0.0784 0.0692 0.596 Other_T L1
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 7.48e-03 -0.226 0.0837 0.596 Other_T L1
ENSG00000287510 AL137857.1 42270 sc-eQTL 3.66e-01 -0.0802 0.0885 0.596 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -522825 sc-eQTL 6.49e-01 -0.0454 0.0995 0.587 B_Activated L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 3.67e-01 -0.0907 0.1 0.587 B_Activated L2
ENSG00000134644 PUM1 -292028 sc-eQTL 1.34e-01 -0.14 0.0927 0.587 B_Activated L2
ENSG00000162510 MATN1 50378 sc-eQTL 2.19e-01 -0.1 0.0812 0.587 B_Activated L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 6.28e-02 -0.105 0.0563 0.587 B_Activated L2
ENSG00000162517 PEF1 -870933 sc-eQTL 7.25e-01 -0.0341 0.0968 0.587 B_Activated L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 5.83e-02 -0.173 0.0909 0.587 B_Activated L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 8.05e-01 -0.0201 0.0813 0.587 B_Activated L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 7.69e-01 -0.0285 0.0969 0.597 B_Intermediate L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 7.88e-01 -0.0217 0.0808 0.597 B_Intermediate L2
ENSG00000134644 PUM1 -292028 sc-eQTL 2.47e-01 -0.0881 0.076 0.597 B_Intermediate L2
ENSG00000162510 MATN1 50378 sc-eQTL 2.53e-01 -0.0906 0.0791 0.597 B_Intermediate L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 3.35e-01 -0.0469 0.0486 0.597 B_Intermediate L2
ENSG00000162517 PEF1 -870933 sc-eQTL 6.29e-01 0.0437 0.0903 0.597 B_Intermediate L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 5.09e-01 0.0452 0.0682 0.597 B_Intermediate L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 4.35e-01 -0.0597 0.0763 0.597 B_Intermediate L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 4.58e-01 0.0694 0.0935 0.599 B_Memory L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.70e-01 0.00322 0.0862 0.599 B_Memory L2
ENSG00000134644 PUM1 -292028 sc-eQTL 1.69e-01 -0.103 0.0747 0.599 B_Memory L2
ENSG00000162510 MATN1 50378 sc-eQTL 8.26e-01 -0.0158 0.0718 0.599 B_Memory L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.10e-01 -0.101 0.0632 0.599 B_Memory L2
ENSG00000162517 PEF1 -870933 sc-eQTL 5.59e-01 -0.0497 0.0849 0.599 B_Memory L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 6.95e-01 0.0286 0.0728 0.599 B_Memory L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 2.72e-01 -0.0936 0.085 0.599 B_Memory L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 2.68e-01 0.0946 0.0853 0.596 B_Naive1 L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 6.71e-01 -0.0315 0.0738 0.596 B_Naive1 L2
ENSG00000134644 PUM1 -292028 sc-eQTL 3.24e-01 0.0642 0.065 0.596 B_Naive1 L2
ENSG00000162510 MATN1 50378 sc-eQTL 3.66e-02 -0.138 0.0654 0.596 B_Naive1 L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 6.91e-01 0.0176 0.0441 0.596 B_Naive1 L2
ENSG00000162517 PEF1 -870933 sc-eQTL 9.97e-01 -0.000335 0.0778 0.596 B_Naive1 L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 2.67e-02 -0.128 0.0573 0.596 B_Naive1 L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 8.27e-01 0.0157 0.0716 0.596 B_Naive1 L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 7.73e-01 -0.0265 0.0915 0.599 B_Naive2 L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.48e-01 0.00489 0.0756 0.599 B_Naive2 L2
ENSG00000134644 PUM1 -292028 sc-eQTL 9.54e-01 -0.00428 0.0739 0.599 B_Naive2 L2
ENSG00000162510 MATN1 50378 sc-eQTL 8.23e-01 -0.0159 0.071 0.599 B_Naive2 L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 5.59e-01 -0.0282 0.0482 0.599 B_Naive2 L2
ENSG00000162517 PEF1 -870933 sc-eQTL 6.99e-01 0.034 0.0877 0.599 B_Naive2 L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 3.20e-02 -0.15 0.0694 0.599 B_Naive2 L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 6.87e-01 0.0306 0.0758 0.599 B_Naive2 L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 8.87e-02 -0.155 0.0903 0.593 CD4_CTL L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 8.57e-01 0.0162 0.0895 0.593 CD4_CTL L2
ENSG00000134644 PUM1 -292028 sc-eQTL 5.77e-01 -0.049 0.0877 0.593 CD4_CTL L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 9.66e-01 -0.00336 0.0782 0.593 CD4_CTL L2
ENSG00000162517 PEF1 -870933 sc-eQTL 6.69e-01 -0.0344 0.0802 0.593 CD4_CTL L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 8.84e-01 -0.0125 0.0856 0.593 CD4_CTL L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 5.66e-01 0.0434 0.0755 0.593 CD4_CTL L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 5.76e-01 -0.04 0.0714 0.596 CD4_Naive L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 6.28e-01 0.0307 0.0633 0.596 CD4_Naive L2
ENSG00000134644 PUM1 -292028 sc-eQTL 2.10e-01 0.0634 0.0504 0.596 CD4_Naive L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 4.42e-04 -0.188 0.0527 0.596 CD4_Naive L2
ENSG00000162517 PEF1 -870933 sc-eQTL 3.95e-01 -0.0506 0.0594 0.596 CD4_Naive L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 8.24e-01 0.0122 0.055 0.596 CD4_Naive L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 2.28e-01 0.0762 0.063 0.596 CD4_Naive L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 2.28e-01 0.108 0.0897 0.596 CD4_TCM L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 6.06e-01 0.0374 0.0725 0.596 CD4_TCM L2
ENSG00000134644 PUM1 -292028 sc-eQTL 7.02e-01 0.0246 0.0642 0.596 CD4_TCM L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 2.77e-02 -0.117 0.0527 0.596 CD4_TCM L2
ENSG00000162517 PEF1 -870933 sc-eQTL 8.34e-01 0.0149 0.0714 0.596 CD4_TCM L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 4.71e-01 0.0488 0.0675 0.596 CD4_TCM L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 9.19e-01 0.00766 0.0753 0.596 CD4_TCM L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 3.42e-01 0.085 0.0892 0.596 CD4_TEM L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 6.24e-01 -0.0418 0.0851 0.596 CD4_TEM L2
ENSG00000134644 PUM1 -292028 sc-eQTL 8.25e-01 -0.0157 0.0709 0.596 CD4_TEM L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 4.95e-01 -0.049 0.0717 0.596 CD4_TEM L2
ENSG00000162517 PEF1 -870933 sc-eQTL 2.08e-01 0.101 0.0801 0.596 CD4_TEM L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 8.63e-01 0.0145 0.084 0.596 CD4_TEM L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 1.07e-01 0.133 0.0822 0.596 CD4_TEM L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 5.82e-01 0.0544 0.0986 0.596 CD8_CTL L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 3.54e-01 -0.0702 0.0755 0.596 CD8_CTL L2
ENSG00000134644 PUM1 -292028 sc-eQTL 8.74e-01 0.0117 0.0735 0.596 CD8_CTL L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 6.66e-02 0.149 0.0807 0.596 CD8_CTL L2
ENSG00000162517 PEF1 -870933 sc-eQTL 2.41e-01 0.0829 0.0706 0.596 CD8_CTL L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 5.56e-01 -0.0504 0.0855 0.596 CD8_CTL L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 2.55e-01 0.0916 0.0802 0.596 CD8_CTL L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 3.39e-01 -0.0842 0.088 0.596 CD8_Naive L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 3.30e-01 -0.0741 0.0759 0.596 CD8_Naive L2
ENSG00000134644 PUM1 -292028 sc-eQTL 9.92e-01 -0.000624 0.0612 0.596 CD8_Naive L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 5.20e-03 -0.163 0.0576 0.596 CD8_Naive L2
ENSG00000162517 PEF1 -870933 sc-eQTL 6.95e-01 -0.032 0.0815 0.596 CD8_Naive L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 2.77e-01 -0.0796 0.073 0.596 CD8_Naive L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 8.91e-01 0.0109 0.0797 0.596 CD8_Naive L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 9.70e-02 -0.165 0.0988 0.602 CD8_TCM L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 1.67e-01 -0.126 0.0908 0.602 CD8_TCM L2
ENSG00000134644 PUM1 -292028 sc-eQTL 7.98e-01 0.0219 0.0858 0.602 CD8_TCM L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 4.04e-01 -0.0749 0.0896 0.602 CD8_TCM L2
ENSG00000162517 PEF1 -870933 sc-eQTL 4.96e-01 0.0625 0.0916 0.602 CD8_TCM L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 6.43e-01 0.0385 0.0831 0.602 CD8_TCM L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 4.07e-01 0.0696 0.0838 0.602 CD8_TCM L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 9.27e-01 0.00858 0.0935 0.6 CD8_TEM L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.00e-01 0.0113 0.0897 0.6 CD8_TEM L2
ENSG00000134644 PUM1 -292028 sc-eQTL 3.02e-01 0.0946 0.0914 0.6 CD8_TEM L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 6.92e-01 -0.0342 0.0861 0.6 CD8_TEM L2
ENSG00000162517 PEF1 -870933 sc-eQTL 3.48e-01 0.0762 0.081 0.6 CD8_TEM L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 9.76e-01 -0.00273 0.0894 0.6 CD8_TEM L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 9.37e-01 0.00642 0.0809 0.6 CD8_TEM L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 9.35e-01 0.00765 0.0942 0.595 MAIT L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.19e-01 0.00854 0.0835 0.595 MAIT L2
ENSG00000134644 PUM1 -292028 sc-eQTL 4.34e-01 0.0627 0.0799 0.595 MAIT L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.68e-01 -0.104 0.0752 0.595 MAIT L2
ENSG00000162517 PEF1 -870933 sc-eQTL 9.77e-01 -0.00239 0.083 0.595 MAIT L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 4.48e-02 -0.168 0.0833 0.595 MAIT L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 6.00e-01 0.0455 0.0866 0.595 MAIT L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 9.40e-01 -0.00718 0.0959 0.593 NK_CD56bright L2
ENSG00000121753 ADGRB2 -990930 sc-eQTL 2.34e-01 0.0894 0.0748 0.593 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.59e-02 -0.135 0.0805 0.593 NK_CD56bright L2
ENSG00000134644 PUM1 -292028 sc-eQTL 5.25e-01 0.0542 0.085 0.593 NK_CD56bright L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.81e-04 0.309 0.0811 0.593 NK_CD56bright L2
ENSG00000162517 PEF1 -870933 sc-eQTL 8.88e-01 0.0115 0.0815 0.593 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 5.12e-01 -0.0553 0.0842 0.593 NK_CD56bright L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 4.52e-01 0.0625 0.083 0.593 NK_CD56bright L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 8.42e-01 -0.0182 0.0912 0.593 NK_CD56dim L2
ENSG00000121753 ADGRB2 -990930 sc-eQTL 1.61e-01 0.112 0.0799 0.593 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 7.70e-01 0.0198 0.0675 0.593 NK_CD56dim L2
ENSG00000134644 PUM1 -292028 sc-eQTL 8.38e-01 -0.0141 0.0692 0.593 NK_CD56dim L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.63e-04 0.274 0.0713 0.593 NK_CD56dim L2
ENSG00000162517 PEF1 -870933 sc-eQTL 9.99e-01 9.2e-05 0.0657 0.593 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 6.26e-02 -0.172 0.0917 0.593 NK_CD56dim L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 7.75e-02 0.134 0.0757 0.593 NK_CD56dim L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 1.60e-01 -0.138 0.0982 0.591 NK_HLA L2
ENSG00000121753 ADGRB2 -990930 sc-eQTL 5.90e-01 0.0423 0.0783 0.591 NK_HLA L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 4.21e-01 -0.0709 0.088 0.591 NK_HLA L2
ENSG00000134644 PUM1 -292028 sc-eQTL 1.08e-01 0.138 0.0853 0.591 NK_HLA L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 3.32e-04 0.29 0.0793 0.591 NK_HLA L2
ENSG00000162517 PEF1 -870933 sc-eQTL 9.07e-01 -0.0108 0.0923 0.591 NK_HLA L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 4.50e-01 0.066 0.087 0.591 NK_HLA L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 5.09e-01 -0.0558 0.0842 0.591 NK_HLA L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 6.55e-01 -0.0399 0.0891 0.593 NK_cytokine L2
ENSG00000121753 ADGRB2 -990930 sc-eQTL 4.10e-01 -0.0663 0.0804 0.593 NK_cytokine L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 4.07e-01 -0.0577 0.0694 0.593 NK_cytokine L2
ENSG00000134644 PUM1 -292028 sc-eQTL 2.79e-01 -0.0814 0.075 0.593 NK_cytokine L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.80e-06 0.385 0.0784 0.593 NK_cytokine L2
ENSG00000162517 PEF1 -870933 sc-eQTL 3.70e-02 0.147 0.0698 0.593 NK_cytokine L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 9.55e-01 -0.00493 0.0877 0.593 NK_cytokine L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 4.98e-01 0.0554 0.0816 0.593 NK_cytokine L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 2.99e-01 -0.105 0.101 0.567 PB L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.60e-01 -0.00585 0.117 0.567 PB L2
ENSG00000134644 PUM1 -292028 sc-eQTL 1.32e-01 0.153 0.101 0.567 PB L2
ENSG00000162510 MATN1 50378 sc-eQTL 9.50e-01 0.00598 0.0949 0.567 PB L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.70e-01 0.0928 0.0672 0.567 PB L2
ENSG00000162517 PEF1 -870933 sc-eQTL 7.36e-01 -0.0353 0.104 0.567 PB L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 2.45e-01 -0.108 0.0923 0.567 PB L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 3.64e-01 0.0898 0.0984 0.567 PB L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 4.34e-01 0.0546 0.0696 0.598 Pro_T L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 5.55e-01 0.0522 0.0884 0.598 Pro_T L2
ENSG00000134644 PUM1 -292028 sc-eQTL 4.44e-01 0.0632 0.0824 0.598 Pro_T L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 5.48e-01 0.0356 0.0591 0.598 Pro_T L2
ENSG00000162517 PEF1 -870933 sc-eQTL 7.83e-01 -0.024 0.0868 0.598 Pro_T L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 9.93e-01 -0.000696 0.0827 0.598 Pro_T L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 7.10e-01 0.0283 0.0761 0.598 Pro_T L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 7.71e-01 -0.0268 0.0917 0.596 Treg L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.00e-01 -0.0112 0.0887 0.596 Treg L2
ENSG00000134644 PUM1 -292028 sc-eQTL 7.12e-01 0.0263 0.071 0.596 Treg L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 7.22e-01 -0.0289 0.0813 0.596 Treg L2
ENSG00000162517 PEF1 -870933 sc-eQTL 9.37e-01 -0.00696 0.0878 0.596 Treg L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 2.20e-01 0.102 0.0826 0.596 Treg L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 1.24e-01 0.127 0.0823 0.596 Treg L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 5.34e-01 0.0592 0.0951 0.598 cDC L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 1.22e-01 -0.159 0.102 0.598 cDC L2
ENSG00000134644 PUM1 -292028 sc-eQTL 5.77e-01 0.0495 0.0884 0.598 cDC L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 2.09e-01 0.0779 0.0618 0.598 cDC L2
ENSG00000162517 PEF1 -870933 sc-eQTL 5.66e-01 0.0516 0.0898 0.598 cDC L2
ENSG00000168528 SERINC2 -635602 sc-eQTL 9.65e-01 -0.00347 0.0797 0.598 cDC L2
ENSG00000284543 LINC01226 -732263 sc-eQTL 6.89e-01 0.0314 0.0782 0.598 cDC L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 9.51e-01 -0.0052 0.0843 0.598 cDC L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 7.75e-01 0.0212 0.0743 0.596 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.75e-01 -0.00258 0.0829 0.596 cMono_IL1B L2
ENSG00000134644 PUM1 -292028 sc-eQTL 4.33e-01 -0.044 0.056 0.596 cMono_IL1B L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 2.71e-01 0.0542 0.0491 0.596 cMono_IL1B L2
ENSG00000162512 SDC3 -134795 sc-eQTL 5.34e-01 0.0577 0.0927 0.596 cMono_IL1B L2
ENSG00000162517 PEF1 -870933 sc-eQTL 2.25e-01 0.0919 0.0755 0.596 cMono_IL1B L2
ENSG00000168528 SERINC2 -635602 sc-eQTL 5.27e-01 -0.0594 0.0938 0.596 cMono_IL1B L2
ENSG00000284543 LINC01226 -732263 sc-eQTL 3.85e-01 0.0721 0.0829 0.596 cMono_IL1B L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 4.96e-01 0.0527 0.0773 0.596 cMono_IL1B L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 2.90e-01 -0.0825 0.0778 0.596 cMono_S100A L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.30e-01 0.00814 0.0922 0.596 cMono_S100A L2
ENSG00000134644 PUM1 -292028 sc-eQTL 9.26e-01 -0.00616 0.0666 0.596 cMono_S100A L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 8.42e-01 0.0102 0.0512 0.596 cMono_S100A L2
ENSG00000162512 SDC3 -134795 sc-eQTL 9.11e-01 -0.00987 0.0884 0.596 cMono_S100A L2
ENSG00000162517 PEF1 -870933 sc-eQTL 9.64e-02 -0.132 0.0793 0.596 cMono_S100A L2
ENSG00000168528 SERINC2 -635602 sc-eQTL 3.29e-01 -0.0914 0.0934 0.596 cMono_S100A L2
ENSG00000284543 LINC01226 -732263 sc-eQTL 6.51e-01 -0.0344 0.076 0.596 cMono_S100A L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 5.35e-01 0.0475 0.0763 0.596 cMono_S100A L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 6.42e-01 0.0554 0.119 0.6 gdT L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 5.09e-01 0.0675 0.102 0.6 gdT L2
ENSG00000134644 PUM1 -292028 sc-eQTL 3.56e-01 -0.097 0.105 0.6 gdT L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 9.21e-01 0.0114 0.114 0.6 gdT L2
ENSG00000162517 PEF1 -870933 sc-eQTL 7.91e-01 0.0278 0.105 0.6 gdT L2
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 2.98e-01 -0.11 0.105 0.6 gdT L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 6.06e-01 -0.0528 0.102 0.6 gdT L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 5.80e-01 -0.049 0.0884 0.602 intMono L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 7.32e-01 0.0327 0.0951 0.602 intMono L2
ENSG00000134644 PUM1 -292028 sc-eQTL 6.10e-01 0.0413 0.0807 0.602 intMono L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 3.12e-02 0.136 0.0626 0.602 intMono L2
ENSG00000162512 SDC3 -134795 sc-eQTL 4.83e-01 -0.0609 0.0866 0.602 intMono L2
ENSG00000162517 PEF1 -870933 sc-eQTL 7.66e-01 0.0272 0.0911 0.602 intMono L2
ENSG00000168528 SERINC2 -635602 sc-eQTL 5.91e-01 -0.0489 0.0907 0.602 intMono L2
ENSG00000284543 LINC01226 -732263 sc-eQTL 6.72e-01 -0.0365 0.086 0.602 intMono L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 2.88e-01 0.0915 0.0858 0.602 intMono L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 8.89e-01 0.0116 0.0828 0.593 ncMono L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 6.03e-01 -0.046 0.0882 0.593 ncMono L2
ENSG00000134644 PUM1 -292028 sc-eQTL 2.37e-01 -0.0854 0.0719 0.593 ncMono L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 4.59e-01 0.0485 0.0654 0.593 ncMono L2
ENSG00000162512 SDC3 -134795 sc-eQTL 9.37e-01 -0.00579 0.0735 0.593 ncMono L2
ENSG00000162517 PEF1 -870933 sc-eQTL 1.39e-01 -0.125 0.0838 0.593 ncMono L2
ENSG00000168528 SERINC2 -635602 sc-eQTL 5.73e-01 0.0452 0.0801 0.593 ncMono L2
ENSG00000284543 LINC01226 -732263 sc-eQTL 6.66e-01 -0.0347 0.0801 0.593 ncMono L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 2.80e-01 0.0897 0.0828 0.593 ncMono L2
ENSG00000060688 SNRNP40 -522825 sc-eQTL 9.43e-02 -0.159 0.0945 0.61 pDC L2
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.03e-01 -0.0128 0.105 0.61 pDC L2
ENSG00000134644 PUM1 -292028 sc-eQTL 9.92e-01 -0.000825 0.0868 0.61 pDC L2
ENSG00000162511 LAPTM5 16189 sc-eQTL 2.13e-01 0.1 0.0803 0.61 pDC L2
ENSG00000162517 PEF1 -870933 sc-eQTL 7.46e-01 0.0339 0.105 0.61 pDC L2
ENSG00000168528 SERINC2 -635602 sc-eQTL 6.35e-01 0.0465 0.0978 0.61 pDC L2
ENSG00000284543 LINC01226 -732263 sc-eQTL 4.17e-01 -0.0617 0.0758 0.61 pDC L2
ENSG00000287510 AL137857.1 42270 sc-eQTL 6.57e-01 -0.0397 0.0893 0.61 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -522825 sc-eQTL 7.09e-01 -0.0343 0.0919 0.596 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 8.66e-01 0.0129 0.0765 0.596 B_Memory LOneK1K
ENSG00000134644 PUM1 -292028 sc-eQTL 2.87e-02 -0.148 0.067 0.596 B_Memory LOneK1K
ENSG00000162510 MATN1 50378 sc-eQTL 1.68e-01 -0.106 0.077 0.596 B_Memory LOneK1K
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.64e-02 -0.116 0.0479 0.596 B_Memory LOneK1K
ENSG00000162517 PEF1 -870933 sc-eQTL 8.10e-01 0.0194 0.0805 0.596 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 7.34e-01 -0.0218 0.0642 0.596 B_Memory LOneK1K
ENSG00000287510 AL137857.1 42270 sc-eQTL 7.71e-02 -0.123 0.0695 0.596 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -522825 sc-eQTL 6.37e-01 0.0393 0.0831 0.596 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 8.19e-01 -0.0151 0.0657 0.596 B_Naive LOneK1K
ENSG00000134644 PUM1 -292028 sc-eQTL 2.62e-01 0.0698 0.062 0.596 B_Naive LOneK1K
ENSG00000162510 MATN1 50378 sc-eQTL 2.90e-02 -0.13 0.0592 0.596 B_Naive LOneK1K
ENSG00000162511 LAPTM5 16189 sc-eQTL 8.73e-01 0.00677 0.0421 0.596 B_Naive LOneK1K
ENSG00000162517 PEF1 -870933 sc-eQTL 9.27e-01 0.00701 0.077 0.596 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 1.90e-03 -0.167 0.0532 0.596 B_Naive LOneK1K
ENSG00000287510 AL137857.1 42270 sc-eQTL 6.88e-01 0.026 0.0646 0.596 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -522825 sc-eQTL 5.78e-01 -0.0394 0.0707 0.596 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.90e-01 -0.00103 0.0802 0.596 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -292028 sc-eQTL 5.66e-01 -0.0293 0.0511 0.596 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.61e-01 0.0629 0.0447 0.596 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -134795 sc-eQTL 8.71e-01 0.0149 0.0917 0.596 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -870933 sc-eQTL 6.67e-01 -0.0277 0.0644 0.596 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -635602 sc-eQTL 4.75e-01 -0.0674 0.0942 0.596 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -732263 sc-eQTL 4.54e-01 0.058 0.0772 0.596 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 42270 sc-eQTL 3.08e-01 0.0738 0.0722 0.596 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -522825 sc-eQTL 8.64e-01 -0.0133 0.0778 0.593 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 9.53e-01 0.00505 0.0851 0.593 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -292028 sc-eQTL 9.04e-01 -0.00841 0.0698 0.593 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 16189 sc-eQTL 1.60e-01 0.0783 0.0555 0.593 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -134795 sc-eQTL 8.76e-01 -0.0127 0.0815 0.593 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -870933 sc-eQTL 9.71e-01 -0.0027 0.0741 0.593 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -635602 sc-eQTL 9.50e-01 -0.00533 0.0845 0.593 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -732263 sc-eQTL 6.45e-01 -0.0369 0.0802 0.593 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 42270 sc-eQTL 2.39e-01 0.0944 0.0801 0.593 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -522825 sc-eQTL 2.40e-01 -0.102 0.0869 0.593 NK_CD56dim LOneK1K
ENSG00000121753 ADGRB2 -990930 sc-eQTL 4.99e-01 0.0502 0.0742 0.593 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -523019 sc-eQTL 3.97e-01 -0.0504 0.0594 0.593 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -292028 sc-eQTL 8.52e-01 -0.0122 0.0652 0.593 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 16189 sc-eQTL 4.44e-06 0.327 0.0693 0.593 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -870933 sc-eQTL 6.54e-02 0.102 0.0549 0.593 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 55459 sc-eQTL 2.50e-01 -0.0967 0.0838 0.593 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 42270 sc-eQTL 2.87e-02 0.158 0.0717 0.593 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 16189 eQTL 7.44e-28 0.106 0.00934 0.0 0.0 0.432
ENSG00000168528 SERINC2 -635602 eQTL 0.000302 -0.138 0.0382 0.0 0.0 0.432

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 16189 2.06e-05 1.93e-05 2.52e-06 9.13e-06 2.47e-06 8.57e-06 2.09e-05 2.14e-06 1.45e-05 7.23e-06 2.04e-05 7.34e-06 2.93e-05 6.86e-06 4.5e-06 9.17e-06 8.8e-06 1.27e-05 4.16e-06 3.3e-06 7.77e-06 1.44e-05 1.58e-05 4.37e-06 2.58e-05 4.5e-06 7.6e-06 5.97e-06 1.6e-05 1.52e-05 1.14e-05 1.06e-06 1.29e-06 3.85e-06 6.48e-06 3.41e-06 1.77e-06 2.15e-06 2.01e-06 1.41e-06 9.78e-07 2.44e-05 2.64e-06 1.51e-07 9.99e-07 2.35e-06 2.51e-06 8.04e-07 4.66e-07