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Genes within 1Mb (chr1:30771731:CT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -525057 sc-eQTL 6.13e-01 -0.0443 0.0874 0.312 B L1
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 7.77e-01 -0.0199 0.07 0.312 B L1
ENSG00000134644 PUM1 -294260 sc-eQTL 6.27e-01 0.0286 0.0587 0.312 B L1
ENSG00000162510 MATN1 48146 sc-eQTL 7.63e-01 0.0186 0.0617 0.312 B L1
ENSG00000162511 LAPTM5 13957 sc-eQTL 2.80e-03 0.143 0.0473 0.312 B L1
ENSG00000162517 PEF1 -873165 sc-eQTL 9.22e-01 0.00712 0.073 0.312 B L1
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 1.85e-01 0.0751 0.0564 0.312 B L1
ENSG00000287510 AL137857.1 40038 sc-eQTL 8.36e-01 0.0139 0.0671 0.312 B L1
ENSG00000060688 SNRNP40 -525057 sc-eQTL 8.33e-01 -0.0158 0.0753 0.312 CD4T L1
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 9.73e-01 0.00198 0.0588 0.312 CD4T L1
ENSG00000134644 PUM1 -294260 sc-eQTL 6.68e-01 0.0225 0.0523 0.312 CD4T L1
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.73e-01 -0.079 0.0578 0.312 CD4T L1
ENSG00000162517 PEF1 -873165 sc-eQTL 2.95e-01 -0.0635 0.0605 0.312 CD4T L1
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 9.94e-01 0.000376 0.0519 0.312 CD4T L1
ENSG00000287510 AL137857.1 40038 sc-eQTL 8.29e-01 0.0134 0.0622 0.312 CD4T L1
ENSG00000060688 SNRNP40 -525057 sc-eQTL 7.49e-01 -0.0318 0.0992 0.312 CD8T L1
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 5.27e-01 -0.0419 0.066 0.312 CD8T L1
ENSG00000134644 PUM1 -294260 sc-eQTL 8.10e-01 -0.014 0.0581 0.312 CD8T L1
ENSG00000162511 LAPTM5 13957 sc-eQTL 8.39e-01 -0.0115 0.0565 0.312 CD8T L1
ENSG00000162517 PEF1 -873165 sc-eQTL 9.57e-01 0.00371 0.0696 0.312 CD8T L1
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 8.36e-01 -0.0137 0.0662 0.312 CD8T L1
ENSG00000287510 AL137857.1 40038 sc-eQTL 8.31e-01 -0.0178 0.0832 0.312 CD8T L1
ENSG00000060688 SNRNP40 -525057 sc-eQTL 5.45e-01 0.0549 0.0904 0.313 DC L1
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 1.39e-01 -0.158 0.107 0.313 DC L1
ENSG00000134644 PUM1 -294260 sc-eQTL 3.49e-01 -0.0785 0.0838 0.313 DC L1
ENSG00000162511 LAPTM5 13957 sc-eQTL 6.51e-01 -0.0271 0.0599 0.313 DC L1
ENSG00000162517 PEF1 -873165 sc-eQTL 3.43e-01 0.0921 0.097 0.313 DC L1
ENSG00000168528 SERINC2 -637834 sc-eQTL 7.76e-01 0.0281 0.0988 0.313 DC L1
ENSG00000284543 LINC01226 -734495 sc-eQTL 5.89e-01 0.0354 0.0654 0.313 DC L1
ENSG00000287510 AL137857.1 40038 sc-eQTL 7.79e-02 0.167 0.094 0.313 DC L1
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.83e-02 -0.135 0.0682 0.312 Mono L1
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 4.94e-01 -0.0584 0.0852 0.312 Mono L1
ENSG00000134644 PUM1 -294260 sc-eQTL 5.10e-01 0.036 0.0546 0.312 Mono L1
ENSG00000162511 LAPTM5 13957 sc-eQTL 3.36e-02 0.106 0.0498 0.312 Mono L1
ENSG00000162512 SDC3 -137027 sc-eQTL 1.62e-01 0.135 0.0962 0.312 Mono L1
ENSG00000162517 PEF1 -873165 sc-eQTL 9.69e-01 -0.00261 0.0678 0.312 Mono L1
ENSG00000168528 SERINC2 -637834 sc-eQTL 4.24e-01 -0.0829 0.104 0.312 Mono L1
ENSG00000284543 LINC01226 -734495 sc-eQTL 1.48e-01 -0.132 0.0909 0.312 Mono L1
ENSG00000287510 AL137857.1 40038 sc-eQTL 8.87e-01 0.0114 0.0799 0.312 Mono L1
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.89e-01 -0.0652 0.0941 0.313 NK L1
ENSG00000121753 ADGRB2 -993162 sc-eQTL 7.16e-01 0.0295 0.0811 0.313 NK L1
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 7.28e-01 -0.0225 0.0645 0.313 NK L1
ENSG00000134644 PUM1 -294260 sc-eQTL 9.62e-01 -0.00319 0.0676 0.313 NK L1
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.49e-01 0.112 0.0774 0.313 NK L1
ENSG00000162517 PEF1 -873165 sc-eQTL 5.98e-01 0.03 0.0568 0.313 NK L1
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 4.70e-01 -0.0632 0.0874 0.313 NK L1
ENSG00000287510 AL137857.1 40038 sc-eQTL 3.33e-01 0.0782 0.0806 0.313 NK L1
ENSG00000060688 SNRNP40 -525057 sc-eQTL 1.03e-01 0.117 0.0718 0.312 Other_T L1
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 3.62e-01 0.0704 0.0771 0.312 Other_T L1
ENSG00000134644 PUM1 -294260 sc-eQTL 3.81e-01 0.0608 0.0693 0.312 Other_T L1
ENSG00000162511 LAPTM5 13957 sc-eQTL 6.24e-01 -0.0279 0.0569 0.312 Other_T L1
ENSG00000162517 PEF1 -873165 sc-eQTL 7.01e-01 -0.0292 0.076 0.312 Other_T L1
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 1.55e-02 -0.224 0.0919 0.312 Other_T L1
ENSG00000287510 AL137857.1 40038 sc-eQTL 5.94e-01 -0.0518 0.097 0.312 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -525057 sc-eQTL 5.01e-01 -0.0757 0.112 0.314 B_Activated L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 4.03e-01 -0.0947 0.113 0.314 B_Activated L2
ENSG00000134644 PUM1 -294260 sc-eQTL 7.32e-01 0.0361 0.105 0.314 B_Activated L2
ENSG00000162510 MATN1 48146 sc-eQTL 7.94e-01 0.024 0.092 0.314 B_Activated L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 4.99e-01 0.0434 0.0641 0.314 B_Activated L2
ENSG00000162517 PEF1 -873165 sc-eQTL 3.51e-01 -0.102 0.109 0.314 B_Activated L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 9.66e-02 -0.172 0.103 0.314 B_Activated L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 6.16e-01 -0.046 0.0916 0.314 B_Activated L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 1.03e-01 -0.173 0.106 0.311 B_Intermediate L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 1.86e-01 -0.117 0.0883 0.311 B_Intermediate L2
ENSG00000134644 PUM1 -294260 sc-eQTL 3.89e-01 -0.0721 0.0835 0.311 B_Intermediate L2
ENSG00000162510 MATN1 48146 sc-eQTL 5.81e-01 -0.0481 0.087 0.311 B_Intermediate L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 8.23e-01 0.012 0.0534 0.311 B_Intermediate L2
ENSG00000162517 PEF1 -873165 sc-eQTL 3.33e-01 0.0961 0.099 0.311 B_Intermediate L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 6.86e-01 0.0304 0.075 0.311 B_Intermediate L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 6.52e-01 0.0379 0.0839 0.311 B_Intermediate L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 8.16e-01 -0.0242 0.104 0.312 B_Memory L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 3.18e-01 0.0957 0.0957 0.312 B_Memory L2
ENSG00000134644 PUM1 -294260 sc-eQTL 6.83e-01 -0.0341 0.0834 0.312 B_Memory L2
ENSG00000162510 MATN1 48146 sc-eQTL 7.69e-01 -0.0234 0.0798 0.312 B_Memory L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 2.88e-02 0.154 0.07 0.312 B_Memory L2
ENSG00000162517 PEF1 -873165 sc-eQTL 4.26e-01 -0.0752 0.0944 0.312 B_Memory L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 1.64e-01 0.113 0.0806 0.312 B_Memory L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 5.25e-01 0.0603 0.0948 0.312 B_Memory L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.70e-01 -0.0684 0.0946 0.312 B_Naive1 L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 7.78e-01 -0.0231 0.0817 0.312 B_Naive1 L2
ENSG00000134644 PUM1 -294260 sc-eQTL 3.69e-01 0.0649 0.072 0.312 B_Naive1 L2
ENSG00000162510 MATN1 48146 sc-eQTL 9.04e-01 -0.00881 0.0732 0.312 B_Naive1 L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.38e-02 0.12 0.0482 0.312 B_Naive1 L2
ENSG00000162517 PEF1 -873165 sc-eQTL 1.80e-01 -0.115 0.0858 0.312 B_Naive1 L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 4.32e-01 0.0505 0.0641 0.312 B_Naive1 L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 6.69e-01 0.0339 0.0793 0.312 B_Naive1 L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 6.47e-01 0.0466 0.102 0.313 B_Naive2 L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 5.18e-01 0.0543 0.0839 0.313 B_Naive2 L2
ENSG00000134644 PUM1 -294260 sc-eQTL 9.52e-01 0.00491 0.0822 0.313 B_Naive2 L2
ENSG00000162510 MATN1 48146 sc-eQTL 1.30e-01 0.119 0.0785 0.313 B_Naive2 L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.29e-01 0.0813 0.0533 0.313 B_Naive2 L2
ENSG00000162517 PEF1 -873165 sc-eQTL 4.73e-02 0.193 0.0966 0.313 B_Naive2 L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 7.47e-01 0.0252 0.078 0.313 B_Naive2 L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 4.13e-01 0.069 0.0842 0.313 B_Naive2 L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.20e-02 -0.207 0.101 0.309 CD4_CTL L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 2.27e-01 -0.121 0.1 0.309 CD4_CTL L2
ENSG00000134644 PUM1 -294260 sc-eQTL 4.64e-01 -0.0722 0.0984 0.309 CD4_CTL L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 7.64e-01 -0.0264 0.0879 0.309 CD4_CTL L2
ENSG00000162517 PEF1 -873165 sc-eQTL 9.65e-01 0.00394 0.0901 0.309 CD4_CTL L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 8.98e-01 0.0124 0.0961 0.309 CD4_CTL L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 5.23e-01 -0.0543 0.0847 0.309 CD4_CTL L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.43e-01 0.0603 0.0785 0.312 CD4_Naive L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 9.36e-01 0.00559 0.0697 0.312 CD4_Naive L2
ENSG00000134644 PUM1 -294260 sc-eQTL 7.17e-01 0.0202 0.0556 0.312 CD4_Naive L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 9.81e-02 -0.0984 0.0592 0.312 CD4_Naive L2
ENSG00000162517 PEF1 -873165 sc-eQTL 2.55e-01 -0.0744 0.0652 0.312 CD4_Naive L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 4.40e-01 -0.0468 0.0604 0.312 CD4_Naive L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 7.27e-01 0.0243 0.0694 0.312 CD4_Naive L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 6.79e-01 -0.0408 0.0984 0.312 CD4_TCM L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 9.44e-01 -0.00561 0.0793 0.312 CD4_TCM L2
ENSG00000134644 PUM1 -294260 sc-eQTL 8.74e-01 0.0111 0.0702 0.312 CD4_TCM L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 4.70e-01 -0.0421 0.0582 0.312 CD4_TCM L2
ENSG00000162517 PEF1 -873165 sc-eQTL 5.63e-02 -0.149 0.0774 0.312 CD4_TCM L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 1.55e-01 0.105 0.0736 0.312 CD4_TCM L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 7.68e-01 0.0243 0.0823 0.312 CD4_TCM L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 8.35e-01 -0.0206 0.0985 0.312 CD4_TEM L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 8.88e-01 0.0133 0.0939 0.312 CD4_TEM L2
ENSG00000134644 PUM1 -294260 sc-eQTL 2.45e-02 -0.175 0.0773 0.312 CD4_TEM L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 5.73e-02 0.15 0.0784 0.312 CD4_TEM L2
ENSG00000162517 PEF1 -873165 sc-eQTL 4.35e-01 0.0692 0.0885 0.312 CD4_TEM L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 4.70e-01 0.067 0.0925 0.312 CD4_TEM L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 4.62e-01 0.0672 0.0911 0.312 CD4_TEM L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 8.74e-01 -0.0171 0.107 0.312 CD8_CTL L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 2.01e-01 -0.105 0.082 0.312 CD8_CTL L2
ENSG00000134644 PUM1 -294260 sc-eQTL 8.12e-01 0.019 0.0799 0.312 CD8_CTL L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 8.27e-01 -0.0194 0.0885 0.312 CD8_CTL L2
ENSG00000162517 PEF1 -873165 sc-eQTL 9.34e-01 0.00639 0.0771 0.312 CD8_CTL L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 5.60e-01 0.0543 0.0929 0.312 CD8_CTL L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 5.60e-01 -0.0511 0.0874 0.312 CD8_CTL L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 7.90e-01 -0.0262 0.0983 0.312 CD8_Naive L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 9.88e-01 -0.00125 0.0848 0.312 CD8_Naive L2
ENSG00000134644 PUM1 -294260 sc-eQTL 4.70e-01 -0.0493 0.0681 0.312 CD8_Naive L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 9.70e-02 -0.108 0.0649 0.312 CD8_Naive L2
ENSG00000162517 PEF1 -873165 sc-eQTL 9.86e-01 0.00154 0.0909 0.312 CD8_Naive L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 4.27e-01 -0.0649 0.0815 0.312 CD8_Naive L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 5.73e-01 -0.0501 0.0888 0.312 CD8_Naive L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 5.23e-02 -0.218 0.111 0.308 CD8_TCM L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 5.64e-01 -0.0596 0.103 0.308 CD8_TCM L2
ENSG00000134644 PUM1 -294260 sc-eQTL 1.40e-01 0.143 0.0965 0.308 CD8_TCM L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 6.01e-01 -0.0531 0.101 0.308 CD8_TCM L2
ENSG00000162517 PEF1 -873165 sc-eQTL 2.10e-01 0.13 0.103 0.308 CD8_TCM L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 9.16e-01 -0.00987 0.094 0.308 CD8_TCM L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 8.75e-02 0.162 0.0943 0.308 CD8_TCM L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 6.26e-01 0.05 0.103 0.315 CD8_TEM L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 8.42e-02 -0.169 0.0976 0.315 CD8_TEM L2
ENSG00000134644 PUM1 -294260 sc-eQTL 2.81e-01 0.108 0.1 0.315 CD8_TEM L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.04e-01 -0.153 0.0939 0.315 CD8_TEM L2
ENSG00000162517 PEF1 -873165 sc-eQTL 6.36e-01 0.0421 0.089 0.315 CD8_TEM L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 5.74e-01 -0.0552 0.098 0.315 CD8_TEM L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 3.46e-01 0.0836 0.0886 0.315 CD8_TEM L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.90e-01 0.0744 0.107 0.31 MAIT L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 9.48e-01 -0.00626 0.0953 0.31 MAIT L2
ENSG00000134644 PUM1 -294260 sc-eQTL 2.72e-01 0.1 0.0911 0.31 MAIT L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 5.31e-01 -0.0541 0.0861 0.31 MAIT L2
ENSG00000162517 PEF1 -873165 sc-eQTL 5.00e-02 -0.185 0.0938 0.31 MAIT L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 1.14e-01 -0.152 0.0954 0.31 MAIT L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 2.92e-01 0.104 0.0987 0.31 MAIT L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 7.70e-01 -0.031 0.106 0.313 NK_CD56bright L2
ENSG00000121753 ADGRB2 -993162 sc-eQTL 3.71e-01 -0.0742 0.0827 0.313 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 8.00e-01 0.0227 0.0895 0.313 NK_CD56bright L2
ENSG00000134644 PUM1 -294260 sc-eQTL 4.85e-01 -0.0656 0.0938 0.313 NK_CD56bright L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 5.75e-01 0.052 0.0926 0.313 NK_CD56bright L2
ENSG00000162517 PEF1 -873165 sc-eQTL 8.37e-01 0.0186 0.09 0.313 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 8.84e-01 -0.0136 0.0931 0.313 NK_CD56bright L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 7.19e-01 0.0331 0.0917 0.313 NK_CD56bright L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 6.92e-01 -0.0398 0.1 0.312 NK_CD56dim L2
ENSG00000121753 ADGRB2 -993162 sc-eQTL 2.88e-01 0.0938 0.0881 0.312 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 6.04e-01 -0.0386 0.0742 0.312 NK_CD56dim L2
ENSG00000134644 PUM1 -294260 sc-eQTL 3.90e-01 -0.0655 0.076 0.312 NK_CD56dim L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.79e-01 0.109 0.0809 0.312 NK_CD56dim L2
ENSG00000162517 PEF1 -873165 sc-eQTL 5.24e-01 -0.046 0.0722 0.312 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 3.96e-01 -0.0865 0.102 0.312 NK_CD56dim L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 4.51e-01 0.0633 0.0838 0.312 NK_CD56dim L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 2.11e-01 -0.132 0.106 0.317 NK_HLA L2
ENSG00000121753 ADGRB2 -993162 sc-eQTL 6.23e-01 0.0414 0.0841 0.317 NK_HLA L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 9.64e-01 -0.00425 0.0946 0.317 NK_HLA L2
ENSG00000134644 PUM1 -294260 sc-eQTL 5.25e-02 0.178 0.0913 0.317 NK_HLA L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 5.86e-01 0.0479 0.0879 0.317 NK_HLA L2
ENSG00000162517 PEF1 -873165 sc-eQTL 8.02e-01 -0.0249 0.0991 0.317 NK_HLA L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 5.48e-01 0.0562 0.0935 0.317 NK_HLA L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 1.45e-01 -0.132 0.09 0.317 NK_HLA L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 8.71e-01 -0.016 0.0983 0.312 NK_cytokine L2
ENSG00000121753 ADGRB2 -993162 sc-eQTL 4.08e-01 -0.0735 0.0886 0.312 NK_cytokine L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 6.45e-01 0.0354 0.0766 0.312 NK_cytokine L2
ENSG00000134644 PUM1 -294260 sc-eQTL 9.57e-01 -0.00449 0.0829 0.312 NK_cytokine L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 2.31e-01 0.109 0.091 0.312 NK_cytokine L2
ENSG00000162517 PEF1 -873165 sc-eQTL 8.02e-01 0.0196 0.0778 0.312 NK_cytokine L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 2.89e-01 -0.103 0.0965 0.312 NK_cytokine L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 9.92e-01 0.000862 0.09 0.312 NK_cytokine L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 7.18e-01 -0.0404 0.112 0.307 PB L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 7.44e-01 0.0424 0.129 0.307 PB L2
ENSG00000134644 PUM1 -294260 sc-eQTL 9.39e-01 0.0086 0.113 0.307 PB L2
ENSG00000162510 MATN1 48146 sc-eQTL 9.68e-01 -0.00418 0.105 0.307 PB L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 7.87e-01 0.0203 0.0749 0.307 PB L2
ENSG00000162517 PEF1 -873165 sc-eQTL 5.52e-01 -0.0687 0.115 0.307 PB L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 5.84e-01 -0.0563 0.102 0.307 PB L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 3.33e-01 0.106 0.109 0.307 PB L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 9.82e-01 0.00174 0.0789 0.313 Pro_T L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 1.02e-02 0.255 0.0985 0.313 Pro_T L2
ENSG00000134644 PUM1 -294260 sc-eQTL 8.10e-01 -0.0225 0.0934 0.313 Pro_T L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 5.64e-01 -0.0387 0.0669 0.313 Pro_T L2
ENSG00000162517 PEF1 -873165 sc-eQTL 5.61e-01 -0.0572 0.0982 0.313 Pro_T L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 4.24e-01 -0.0748 0.0935 0.313 Pro_T L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 6.07e-01 0.0443 0.086 0.313 Pro_T L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 1.37e-01 -0.152 0.102 0.312 Treg L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 9.65e-01 0.0043 0.099 0.312 Treg L2
ENSG00000134644 PUM1 -294260 sc-eQTL 3.77e-01 0.0701 0.0791 0.312 Treg L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 7.45e-01 -0.0296 0.0907 0.312 Treg L2
ENSG00000162517 PEF1 -873165 sc-eQTL 6.22e-01 -0.0483 0.098 0.312 Treg L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 4.73e-01 0.0664 0.0924 0.312 Treg L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 8.79e-01 0.0141 0.0924 0.312 Treg L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 1.90e-01 0.141 0.107 0.31 cDC L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 5.92e-01 -0.0624 0.116 0.31 cDC L2
ENSG00000134644 PUM1 -294260 sc-eQTL 8.10e-01 0.0241 0.1 0.31 cDC L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 8.36e-01 0.0145 0.0701 0.31 cDC L2
ENSG00000162517 PEF1 -873165 sc-eQTL 8.28e-01 0.0221 0.101 0.31 cDC L2
ENSG00000168528 SERINC2 -637834 sc-eQTL 3.56e-01 -0.083 0.0898 0.31 cDC L2
ENSG00000284543 LINC01226 -734495 sc-eQTL 6.40e-01 -0.0414 0.0884 0.31 cDC L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 1.73e-02 0.225 0.0937 0.31 cDC L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 3.19e-01 -0.0823 0.0824 0.312 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 3.53e-01 -0.0856 0.0919 0.312 cMono_IL1B L2
ENSG00000134644 PUM1 -294260 sc-eQTL 3.24e-01 0.0615 0.0622 0.312 cMono_IL1B L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 2.78e-01 0.0593 0.0546 0.312 cMono_IL1B L2
ENSG00000162512 SDC3 -137027 sc-eQTL 1.83e-01 0.137 0.103 0.312 cMono_IL1B L2
ENSG00000162517 PEF1 -873165 sc-eQTL 2.53e-01 0.0962 0.0839 0.312 cMono_IL1B L2
ENSG00000168528 SERINC2 -637834 sc-eQTL 2.65e-01 -0.116 0.104 0.312 cMono_IL1B L2
ENSG00000284543 LINC01226 -734495 sc-eQTL 3.53e-01 -0.0856 0.092 0.312 cMono_IL1B L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 4.29e-01 -0.068 0.0859 0.312 cMono_IL1B L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 6.08e-02 -0.161 0.0856 0.312 cMono_S100A L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 5.62e-01 0.0593 0.102 0.312 cMono_S100A L2
ENSG00000134644 PUM1 -294260 sc-eQTL 7.28e-01 -0.0257 0.0737 0.312 cMono_S100A L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 6.34e-02 0.105 0.0562 0.312 cMono_S100A L2
ENSG00000162512 SDC3 -137027 sc-eQTL 5.55e-01 0.0578 0.0978 0.312 cMono_S100A L2
ENSG00000162517 PEF1 -873165 sc-eQTL 4.76e-01 -0.0631 0.0883 0.312 cMono_S100A L2
ENSG00000168528 SERINC2 -637834 sc-eQTL 4.20e-01 -0.0836 0.104 0.312 cMono_S100A L2
ENSG00000284543 LINC01226 -734495 sc-eQTL 2.28e-01 -0.101 0.0839 0.312 cMono_S100A L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 9.73e-01 0.00288 0.0846 0.312 cMono_S100A L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 5.79e-01 -0.0755 0.136 0.303 gdT L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 7.61e-01 0.0355 0.117 0.303 gdT L2
ENSG00000134644 PUM1 -294260 sc-eQTL 7.74e-01 0.0347 0.12 0.303 gdT L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.53e-01 -0.187 0.13 0.303 gdT L2
ENSG00000162517 PEF1 -873165 sc-eQTL 5.46e-01 0.0723 0.119 0.303 gdT L2
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 7.30e-01 -0.0416 0.121 0.303 gdT L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 2.56e-02 -0.259 0.115 0.303 gdT L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 1.08e-01 -0.154 0.0955 0.316 intMono L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 7.17e-01 -0.0374 0.103 0.316 intMono L2
ENSG00000134644 PUM1 -294260 sc-eQTL 5.41e-01 0.0536 0.0875 0.316 intMono L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 8.93e-02 0.117 0.0683 0.316 intMono L2
ENSG00000162512 SDC3 -137027 sc-eQTL 3.54e-01 0.0874 0.0939 0.316 intMono L2
ENSG00000162517 PEF1 -873165 sc-eQTL 2.76e-01 0.108 0.0986 0.316 intMono L2
ENSG00000168528 SERINC2 -637834 sc-eQTL 5.31e-01 -0.0617 0.0984 0.316 intMono L2
ENSG00000284543 LINC01226 -734495 sc-eQTL 1.45e-01 -0.136 0.0929 0.316 intMono L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 4.10e-01 0.077 0.0932 0.316 intMono L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 9.08e-02 -0.155 0.0914 0.314 ncMono L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 3.23e-01 -0.097 0.0979 0.314 ncMono L2
ENSG00000134644 PUM1 -294260 sc-eQTL 5.91e-01 0.0431 0.0801 0.314 ncMono L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 2.85e-01 0.0779 0.0726 0.314 ncMono L2
ENSG00000162512 SDC3 -137027 sc-eQTL 5.05e-01 0.0545 0.0816 0.314 ncMono L2
ENSG00000162517 PEF1 -873165 sc-eQTL 2.54e-01 -0.107 0.0933 0.314 ncMono L2
ENSG00000168528 SERINC2 -637834 sc-eQTL 6.44e-01 -0.0412 0.0891 0.314 ncMono L2
ENSG00000284543 LINC01226 -734495 sc-eQTL 9.82e-01 0.00206 0.089 0.314 ncMono L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 1.30e-02 0.228 0.0909 0.314 ncMono L2
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.57e-01 -0.0781 0.105 0.305 pDC L2
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 3.98e-02 -0.236 0.114 0.305 pDC L2
ENSG00000134644 PUM1 -294260 sc-eQTL 2.35e-01 -0.114 0.0952 0.305 pDC L2
ENSG00000162511 LAPTM5 13957 sc-eQTL 8.38e-01 -0.0182 0.0889 0.305 pDC L2
ENSG00000162517 PEF1 -873165 sc-eQTL 7.86e-01 0.0313 0.115 0.305 pDC L2
ENSG00000168528 SERINC2 -637834 sc-eQTL 8.19e-01 0.0247 0.108 0.305 pDC L2
ENSG00000284543 LINC01226 -734495 sc-eQTL 9.97e-01 -0.000272 0.0837 0.305 pDC L2
ENSG00000287510 AL137857.1 40038 sc-eQTL 7.31e-01 -0.0338 0.0984 0.305 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.93e-02 -0.198 0.1 0.312 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 8.62e-01 -0.0147 0.0843 0.312 B_Memory LOneK1K
ENSG00000134644 PUM1 -294260 sc-eQTL 1.84e-01 -0.0992 0.0744 0.312 B_Memory LOneK1K
ENSG00000162510 MATN1 48146 sc-eQTL 9.86e-01 0.00151 0.0852 0.312 B_Memory LOneK1K
ENSG00000162511 LAPTM5 13957 sc-eQTL 4.45e-01 0.0409 0.0535 0.312 B_Memory LOneK1K
ENSG00000162517 PEF1 -873165 sc-eQTL 6.55e-01 0.0396 0.0886 0.312 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 5.79e-01 0.0393 0.0707 0.312 B_Memory LOneK1K
ENSG00000287510 AL137857.1 40038 sc-eQTL 6.14e-01 -0.0389 0.0771 0.312 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -525057 sc-eQTL 8.35e-01 -0.0194 0.0927 0.312 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 7.91e-01 0.0194 0.0733 0.312 B_Naive LOneK1K
ENSG00000134644 PUM1 -294260 sc-eQTL 6.04e-01 0.036 0.0693 0.312 B_Naive LOneK1K
ENSG00000162510 MATN1 48146 sc-eQTL 6.00e-01 0.035 0.0667 0.312 B_Naive LOneK1K
ENSG00000162511 LAPTM5 13957 sc-eQTL 3.36e-02 0.0995 0.0465 0.312 B_Naive LOneK1K
ENSG00000162517 PEF1 -873165 sc-eQTL 9.82e-01 0.00192 0.0858 0.312 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 2.26e-01 0.0735 0.0605 0.312 B_Naive LOneK1K
ENSG00000287510 AL137857.1 40038 sc-eQTL 6.13e-01 0.0365 0.0721 0.312 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -525057 sc-eQTL 7.43e-02 -0.14 0.0782 0.312 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 6.65e-01 -0.0387 0.0892 0.312 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -294260 sc-eQTL 4.75e-01 0.0407 0.0568 0.312 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 13957 sc-eQTL 3.64e-02 0.104 0.0495 0.312 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -137027 sc-eQTL 1.98e-01 0.131 0.102 0.312 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -873165 sc-eQTL 7.83e-01 0.0198 0.0717 0.312 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -637834 sc-eQTL 3.16e-01 -0.105 0.105 0.312 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -734495 sc-eQTL 1.95e-01 -0.111 0.0857 0.312 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 40038 sc-eQTL 6.71e-01 -0.0342 0.0805 0.312 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.97e-02 -0.172 0.0872 0.31 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 7.47e-01 -0.0311 0.0963 0.31 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -294260 sc-eQTL 5.15e-01 0.0513 0.0788 0.31 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.03e-01 0.103 0.0627 0.31 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -137027 sc-eQTL 2.47e-01 0.107 0.0919 0.31 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -873165 sc-eQTL 4.97e-01 0.0569 0.0837 0.31 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -637834 sc-eQTL 8.66e-01 -0.0162 0.0956 0.31 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -734495 sc-eQTL 6.35e-02 -0.168 0.09 0.31 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 40038 sc-eQTL 1.12e-01 0.144 0.0903 0.31 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -525057 sc-eQTL 4.22e-01 -0.0763 0.0948 0.312 NK_CD56dim LOneK1K
ENSG00000121753 ADGRB2 -993162 sc-eQTL 7.64e-01 0.0243 0.0808 0.312 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -525251 sc-eQTL 6.04e-01 -0.0336 0.0648 0.312 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -294260 sc-eQTL 6.67e-01 0.0306 0.071 0.312 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 13957 sc-eQTL 1.32e-01 0.119 0.079 0.312 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -873165 sc-eQTL 7.64e-01 0.0181 0.0603 0.312 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 53227 sc-eQTL 5.72e-01 -0.0518 0.0915 0.312 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 40038 sc-eQTL 3.17e-01 0.079 0.0789 0.312 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121766 ZCCHC17 -525251 eQTL 2.53e-02 0.0451 0.0201 0.0 0.0 0.288
ENSG00000168528 SERINC2 -637834 eQTL 0.0056 -0.121 0.0437 0.0 0.0 0.288
ENSG00000186056 MATN1-AS1 53227 eQTL 1.03e-02 0.0367 0.0143 0.00179 0.0 0.288

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000186056 MATN1-AS1 53227 0.00018 3.42e-05 2.96e-06 1.13e-05 2.38e-06 1.95e-05 3.36e-05 2.16e-06 1.06e-05 5.42e-06 2.23e-05 6.27e-06 2.5e-05 4.54e-06 3.66e-06 9.06e-06 9.53e-06 1.59e-05 6.45e-06 2.89e-06 7.96e-06 1.27e-05 2.22e-05 5.67e-06 2.29e-05 4.53e-06 7.99e-06 3.99e-06 2.59e-05 9.08e-06 8.88e-06 5.42e-07 1.22e-06 2.92e-06 6.01e-06 2.1e-06 9.75e-07 4.68e-07 1.84e-06 1.02e-06 1.96e-07 8.86e-05 8.52e-06 1.68e-07 2.21e-06 1.68e-06 1.8e-06 6.3e-07 4.78e-07