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Genes within 1Mb (chr1:30771066:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -525722 sc-eQTL 6.52e-01 -0.0451 0.0999 0.816 B L1
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 8.73e-01 0.0128 0.08 0.816 B L1
ENSG00000134644 PUM1 -294925 sc-eQTL 6.85e-01 -0.0272 0.0671 0.816 B L1
ENSG00000162510 MATN1 47481 sc-eQTL 9.67e-01 0.00291 0.0706 0.816 B L1
ENSG00000162511 LAPTM5 13292 sc-eQTL 9.82e-01 -0.00126 0.0553 0.816 B L1
ENSG00000162517 PEF1 -873830 sc-eQTL 3.25e-01 -0.0821 0.0833 0.816 B L1
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 4.28e-02 -0.131 0.0642 0.816 B L1
ENSG00000287510 AL137857.1 39373 sc-eQTL 2.53e-02 -0.171 0.0758 0.816 B L1
ENSG00000060688 SNRNP40 -525722 sc-eQTL 4.26e-01 -0.0702 0.088 0.816 CD4T L1
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 7.01e-01 0.0264 0.0688 0.816 CD4T L1
ENSG00000134644 PUM1 -294925 sc-eQTL 5.13e-01 0.0401 0.0613 0.816 CD4T L1
ENSG00000162511 LAPTM5 13292 sc-eQTL 6.12e-01 -0.0345 0.0679 0.816 CD4T L1
ENSG00000162517 PEF1 -873830 sc-eQTL 2.96e-01 -0.0742 0.0709 0.816 CD4T L1
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 3.83e-01 -0.0531 0.0607 0.816 CD4T L1
ENSG00000287510 AL137857.1 39373 sc-eQTL 2.77e-01 0.0791 0.0726 0.816 CD4T L1
ENSG00000060688 SNRNP40 -525722 sc-eQTL 4.35e-01 -0.0898 0.115 0.816 CD8T L1
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 6.85e-01 0.031 0.0765 0.816 CD8T L1
ENSG00000134644 PUM1 -294925 sc-eQTL 7.64e-01 -0.0203 0.0674 0.816 CD8T L1
ENSG00000162511 LAPTM5 13292 sc-eQTL 2.09e-01 0.0821 0.0652 0.816 CD8T L1
ENSG00000162517 PEF1 -873830 sc-eQTL 3.96e-01 -0.0684 0.0805 0.816 CD8T L1
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 1.00e-01 -0.126 0.0762 0.816 CD8T L1
ENSG00000287510 AL137857.1 39373 sc-eQTL 4.40e-01 -0.0744 0.0962 0.816 CD8T L1
ENSG00000060688 SNRNP40 -525722 sc-eQTL 9.84e-01 0.00209 0.104 0.82 DC L1
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 1.55e-01 -0.175 0.122 0.82 DC L1
ENSG00000134644 PUM1 -294925 sc-eQTL 5.14e-01 -0.0629 0.0963 0.82 DC L1
ENSG00000162511 LAPTM5 13292 sc-eQTL 4.98e-01 0.0467 0.0688 0.82 DC L1
ENSG00000162517 PEF1 -873830 sc-eQTL 4.91e-01 0.0769 0.111 0.82 DC L1
ENSG00000168528 SERINC2 -638499 sc-eQTL 3.01e-01 0.117 0.113 0.82 DC L1
ENSG00000284543 LINC01226 -735160 sc-eQTL 7.57e-01 0.0233 0.0752 0.82 DC L1
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.77e-01 -0.0963 0.109 0.82 DC L1
ENSG00000060688 SNRNP40 -525722 sc-eQTL 5.03e-01 0.052 0.0775 0.816 Mono L1
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 6.37e-01 0.0454 0.0961 0.816 Mono L1
ENSG00000134644 PUM1 -294925 sc-eQTL 1.33e-01 -0.0924 0.0613 0.816 Mono L1
ENSG00000162511 LAPTM5 13292 sc-eQTL 7.45e-01 0.0184 0.0567 0.816 Mono L1
ENSG00000162512 SDC3 -137692 sc-eQTL 4.41e-01 -0.084 0.109 0.816 Mono L1
ENSG00000162517 PEF1 -873830 sc-eQTL 4.98e-01 -0.0518 0.0764 0.816 Mono L1
ENSG00000168528 SERINC2 -638499 sc-eQTL 9.41e-01 -0.00863 0.117 0.816 Mono L1
ENSG00000284543 LINC01226 -735160 sc-eQTL 7.71e-01 0.0301 0.103 0.816 Mono L1
ENSG00000287510 AL137857.1 39373 sc-eQTL 9.20e-01 0.00911 0.0901 0.816 Mono L1
ENSG00000060688 SNRNP40 -525722 sc-eQTL 3.06e-01 -0.113 0.11 0.815 NK L1
ENSG00000121753 ADGRB2 -993827 sc-eQTL 5.21e-01 0.0609 0.0946 0.815 NK L1
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 1.54e-01 -0.107 0.0749 0.815 NK L1
ENSG00000134644 PUM1 -294925 sc-eQTL 3.47e-01 -0.0743 0.0788 0.815 NK L1
ENSG00000162511 LAPTM5 13292 sc-eQTL 9.05e-05 0.35 0.0876 0.815 NK L1
ENSG00000162517 PEF1 -873830 sc-eQTL 7.30e-02 0.119 0.0658 0.815 NK L1
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 9.14e-01 0.011 0.102 0.815 NK L1
ENSG00000287510 AL137857.1 39373 sc-eQTL 4.62e-01 0.0694 0.0942 0.815 NK L1
ENSG00000060688 SNRNP40 -525722 sc-eQTL 7.02e-01 0.0322 0.0839 0.816 Other_T L1
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 5.08e-01 0.0594 0.0896 0.816 Other_T L1
ENSG00000134644 PUM1 -294925 sc-eQTL 4.95e-01 0.055 0.0806 0.816 Other_T L1
ENSG00000162511 LAPTM5 13292 sc-eQTL 4.93e-01 -0.0453 0.066 0.816 Other_T L1
ENSG00000162517 PEF1 -873830 sc-eQTL 1.18e-01 0.138 0.0878 0.816 Other_T L1
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 4.34e-03 -0.306 0.106 0.816 Other_T L1
ENSG00000287510 AL137857.1 39373 sc-eQTL 9.93e-01 -0.00103 0.113 0.816 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -525722 sc-eQTL 6.70e-01 0.0538 0.126 0.811 B_Activated L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 7.72e-01 -0.0369 0.127 0.811 B_Activated L2
ENSG00000134644 PUM1 -294925 sc-eQTL 1.82e-01 -0.158 0.118 0.811 B_Activated L2
ENSG00000162510 MATN1 47481 sc-eQTL 2.11e-01 -0.129 0.103 0.811 B_Activated L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 4.72e-02 -0.142 0.0713 0.811 B_Activated L2
ENSG00000162517 PEF1 -873830 sc-eQTL 3.85e-01 -0.107 0.122 0.811 B_Activated L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 1.50e-01 -0.167 0.116 0.811 B_Activated L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 1.88e-01 -0.135 0.102 0.811 B_Activated L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 9.50e-01 0.00759 0.121 0.818 B_Intermediate L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 6.34e-01 -0.0481 0.101 0.818 B_Intermediate L2
ENSG00000134644 PUM1 -294925 sc-eQTL 1.87e-02 -0.223 0.0941 0.818 B_Intermediate L2
ENSG00000162510 MATN1 47481 sc-eQTL 2.63e-01 -0.111 0.0989 0.818 B_Intermediate L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 3.06e-02 -0.131 0.0602 0.818 B_Intermediate L2
ENSG00000162517 PEF1 -873830 sc-eQTL 7.20e-01 -0.0406 0.113 0.818 B_Intermediate L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 6.70e-01 0.0365 0.0854 0.818 B_Intermediate L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.86e-01 -0.083 0.0954 0.818 B_Intermediate L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 5.23e-01 0.0753 0.118 0.815 B_Memory L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 3.23e-01 0.107 0.108 0.815 B_Memory L2
ENSG00000134644 PUM1 -294925 sc-eQTL 7.58e-01 -0.0291 0.0944 0.815 B_Memory L2
ENSG00000162510 MATN1 47481 sc-eQTL 4.60e-01 -0.0667 0.0902 0.815 B_Memory L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 2.83e-01 -0.086 0.0798 0.815 B_Memory L2
ENSG00000162517 PEF1 -873830 sc-eQTL 6.13e-02 -0.199 0.106 0.815 B_Memory L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 7.96e-01 -0.0237 0.0916 0.815 B_Memory L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 9.89e-01 0.00144 0.107 0.815 B_Memory L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 5.16e-01 0.0708 0.109 0.816 B_Naive1 L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 6.15e-01 0.0472 0.0939 0.816 B_Naive1 L2
ENSG00000134644 PUM1 -294925 sc-eQTL 5.43e-01 0.0505 0.0828 0.816 B_Naive1 L2
ENSG00000162510 MATN1 47481 sc-eQTL 3.91e-01 0.0721 0.0839 0.816 B_Naive1 L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 8.54e-01 0.0104 0.0562 0.816 B_Naive1 L2
ENSG00000162517 PEF1 -873830 sc-eQTL 8.63e-01 0.0171 0.099 0.816 B_Naive1 L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 1.16e-01 -0.116 0.0733 0.816 B_Naive1 L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.44e-02 -0.192 0.0901 0.816 B_Naive1 L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 1.71e-01 -0.157 0.114 0.815 B_Naive2 L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 4.10e-01 -0.0781 0.0946 0.815 B_Naive2 L2
ENSG00000134644 PUM1 -294925 sc-eQTL 6.47e-01 -0.0425 0.0927 0.815 B_Naive2 L2
ENSG00000162510 MATN1 47481 sc-eQTL 9.08e-01 -0.0103 0.0891 0.815 B_Naive2 L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 5.49e-01 -0.0363 0.0604 0.815 B_Naive2 L2
ENSG00000162517 PEF1 -873830 sc-eQTL 7.97e-01 -0.0283 0.11 0.815 B_Naive2 L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 5.23e-02 -0.17 0.0873 0.815 B_Naive2 L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.34e-01 -0.0918 0.0949 0.815 B_Naive2 L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 1.69e-01 -0.159 0.115 0.811 CD4_CTL L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 6.27e-01 0.0553 0.114 0.811 CD4_CTL L2
ENSG00000134644 PUM1 -294925 sc-eQTL 1.66e-02 -0.266 0.11 0.811 CD4_CTL L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 3.79e-01 0.0876 0.0993 0.811 CD4_CTL L2
ENSG00000162517 PEF1 -873830 sc-eQTL 3.93e-01 -0.0871 0.102 0.811 CD4_CTL L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 9.11e-01 0.0122 0.109 0.811 CD4_CTL L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.45e-01 0.0907 0.0958 0.811 CD4_CTL L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 4.22e-01 -0.0744 0.0925 0.816 CD4_Naive L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 4.19e-01 0.0664 0.082 0.816 CD4_Naive L2
ENSG00000134644 PUM1 -294925 sc-eQTL 9.00e-01 0.00828 0.0656 0.816 CD4_Naive L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 2.52e-01 -0.0804 0.07 0.816 CD4_Naive L2
ENSG00000162517 PEF1 -873830 sc-eQTL 9.31e-02 -0.129 0.0765 0.816 CD4_Naive L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 3.10e-01 -0.0724 0.0711 0.816 CD4_Naive L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 2.43e-01 0.0955 0.0816 0.816 CD4_Naive L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 7.65e-01 0.0348 0.116 0.816 CD4_TCM L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 8.67e-01 0.0157 0.0937 0.816 CD4_TCM L2
ENSG00000134644 PUM1 -294925 sc-eQTL 5.82e-02 0.157 0.0823 0.816 CD4_TCM L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 7.73e-01 0.0199 0.0688 0.816 CD4_TCM L2
ENSG00000162517 PEF1 -873830 sc-eQTL 5.24e-01 -0.0589 0.0922 0.816 CD4_TCM L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 6.42e-01 0.0406 0.0873 0.816 CD4_TCM L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.39e-01 -0.093 0.0971 0.816 CD4_TCM L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 3.06e-01 0.117 0.114 0.816 CD4_TEM L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 6.00e-01 -0.0573 0.109 0.816 CD4_TEM L2
ENSG00000134644 PUM1 -294925 sc-eQTL 7.82e-01 -0.0252 0.0908 0.816 CD4_TEM L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 8.80e-01 0.0138 0.0918 0.816 CD4_TEM L2
ENSG00000162517 PEF1 -873830 sc-eQTL 6.82e-01 0.0422 0.103 0.816 CD4_TEM L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 5.38e-01 -0.0662 0.107 0.816 CD4_TEM L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 9.21e-02 0.178 0.105 0.816 CD4_TEM L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 3.47e-01 -0.117 0.124 0.816 CD8_CTL L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 8.30e-01 0.0205 0.0953 0.816 CD8_CTL L2
ENSG00000134644 PUM1 -294925 sc-eQTL 6.19e-01 0.046 0.0925 0.816 CD8_CTL L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 3.26e-02 0.218 0.101 0.816 CD8_CTL L2
ENSG00000162517 PEF1 -873830 sc-eQTL 8.20e-01 -0.0203 0.0892 0.816 CD8_CTL L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 7.77e-01 -0.0305 0.108 0.816 CD8_CTL L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 6.78e-01 0.0421 0.101 0.816 CD8_CTL L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 4.21e-01 -0.092 0.114 0.816 CD8_Naive L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 8.43e-01 -0.0195 0.0984 0.816 CD8_Naive L2
ENSG00000134644 PUM1 -294925 sc-eQTL 2.49e-01 -0.0913 0.079 0.816 CD8_Naive L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 2.57e-01 -0.0861 0.0757 0.816 CD8_Naive L2
ENSG00000162517 PEF1 -873830 sc-eQTL 3.75e-01 -0.0936 0.105 0.816 CD8_Naive L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 1.91e-01 -0.124 0.0944 0.816 CD8_Naive L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.53e-01 -0.0959 0.103 0.816 CD8_Naive L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 8.87e-01 0.0182 0.128 0.815 CD8_TCM L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 2.59e-02 -0.259 0.115 0.815 CD8_TCM L2
ENSG00000134644 PUM1 -294925 sc-eQTL 1.56e-01 0.156 0.109 0.815 CD8_TCM L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 9.29e-01 0.0103 0.115 0.815 CD8_TCM L2
ENSG00000162517 PEF1 -873830 sc-eQTL 7.41e-01 -0.0389 0.118 0.815 CD8_TCM L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 7.57e-01 0.033 0.106 0.815 CD8_TCM L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.24e-01 0.106 0.107 0.815 CD8_TCM L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 6.59e-01 -0.0531 0.12 0.815 CD8_TEM L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 7.48e-01 0.0371 0.115 0.815 CD8_TEM L2
ENSG00000134644 PUM1 -294925 sc-eQTL 2.05e-01 0.149 0.117 0.815 CD8_TEM L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 5.45e-01 -0.0672 0.111 0.815 CD8_TEM L2
ENSG00000162517 PEF1 -873830 sc-eQTL 7.85e-01 0.0285 0.104 0.815 CD8_TEM L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 7.40e-02 -0.205 0.114 0.815 CD8_TEM L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 5.40e-03 -0.287 0.102 0.815 CD8_TEM L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 6.64e-01 0.0518 0.119 0.814 MAIT L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 3.99e-01 0.089 0.105 0.814 MAIT L2
ENSG00000134644 PUM1 -294925 sc-eQTL 6.15e-01 0.051 0.101 0.814 MAIT L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 4.62e-01 -0.0702 0.0953 0.814 MAIT L2
ENSG00000162517 PEF1 -873830 sc-eQTL 3.99e-01 0.0885 0.105 0.814 MAIT L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 4.81e-02 -0.209 0.105 0.814 MAIT L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 1.91e-01 0.143 0.109 0.814 MAIT L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 4.96e-01 0.0838 0.123 0.816 NK_CD56bright L2
ENSG00000121753 ADGRB2 -993827 sc-eQTL 9.54e-01 -0.00553 0.0962 0.816 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 1.04e-01 -0.168 0.103 0.816 NK_CD56bright L2
ENSG00000134644 PUM1 -294925 sc-eQTL 7.03e-01 0.0416 0.109 0.816 NK_CD56bright L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 1.79e-03 0.332 0.105 0.816 NK_CD56bright L2
ENSG00000162517 PEF1 -873830 sc-eQTL 3.75e-01 0.0927 0.104 0.816 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 5.23e-02 -0.209 0.107 0.816 NK_CD56bright L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 7.91e-01 -0.0283 0.106 0.816 NK_CD56bright L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 7.48e-01 0.0372 0.115 0.815 NK_CD56dim L2
ENSG00000121753 ADGRB2 -993827 sc-eQTL 5.64e-01 0.0586 0.102 0.815 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 3.02e-01 -0.0882 0.0852 0.815 NK_CD56dim L2
ENSG00000134644 PUM1 -294925 sc-eQTL 9.24e-01 -0.0084 0.0876 0.815 NK_CD56dim L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 3.20e-03 0.273 0.0915 0.815 NK_CD56dim L2
ENSG00000162517 PEF1 -873830 sc-eQTL 9.11e-01 0.00927 0.0831 0.815 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 8.92e-01 -0.0159 0.117 0.815 NK_CD56dim L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 5.46e-01 0.0583 0.0965 0.815 NK_CD56dim L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 8.93e-02 -0.21 0.123 0.815 NK_HLA L2
ENSG00000121753 ADGRB2 -993827 sc-eQTL 3.57e-01 0.0908 0.0982 0.815 NK_HLA L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 7.95e-01 0.0287 0.111 0.815 NK_HLA L2
ENSG00000134644 PUM1 -294925 sc-eQTL 2.51e-01 0.124 0.107 0.815 NK_HLA L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 4.98e-03 0.287 0.101 0.815 NK_HLA L2
ENSG00000162517 PEF1 -873830 sc-eQTL 8.48e-01 -0.0223 0.116 0.815 NK_HLA L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 4.39e-01 0.0848 0.109 0.815 NK_HLA L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 5.15e-01 -0.069 0.106 0.815 NK_HLA L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 2.46e-01 -0.131 0.112 0.815 NK_cytokine L2
ENSG00000121753 ADGRB2 -993827 sc-eQTL 9.08e-01 -0.0117 0.102 0.815 NK_cytokine L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 1.33e-01 -0.132 0.0874 0.815 NK_cytokine L2
ENSG00000134644 PUM1 -294925 sc-eQTL 1.31e-01 -0.143 0.0945 0.815 NK_cytokine L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 8.34e-03 0.274 0.103 0.815 NK_cytokine L2
ENSG00000162517 PEF1 -873830 sc-eQTL 1.46e-02 0.216 0.0879 0.815 NK_cytokine L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 9.00e-01 0.0139 0.111 0.815 NK_cytokine L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 9.39e-01 -0.00791 0.103 0.815 NK_cytokine L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 2.42e-01 -0.157 0.134 0.815 PB L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 9.77e-01 -0.0045 0.156 0.815 PB L2
ENSG00000134644 PUM1 -294925 sc-eQTL 2.52e-01 0.155 0.135 0.815 PB L2
ENSG00000162510 MATN1 47481 sc-eQTL 7.30e-01 -0.0438 0.126 0.815 PB L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 2.18e-01 0.111 0.0897 0.815 PB L2
ENSG00000162517 PEF1 -873830 sc-eQTL 4.19e-01 0.112 0.139 0.815 PB L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 5.97e-01 -0.0654 0.124 0.815 PB L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 7.66e-01 0.0393 0.132 0.815 PB L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 7.74e-01 -0.0252 0.0875 0.813 Pro_T L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 8.96e-01 0.0146 0.111 0.813 Pro_T L2
ENSG00000134644 PUM1 -294925 sc-eQTL 5.22e-01 0.0664 0.104 0.813 Pro_T L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 6.80e-01 0.0306 0.0743 0.813 Pro_T L2
ENSG00000162517 PEF1 -873830 sc-eQTL 3.50e-01 -0.102 0.109 0.813 Pro_T L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 8.70e-01 -0.017 0.104 0.813 Pro_T L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 5.10e-01 -0.063 0.0955 0.813 Pro_T L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 7.20e-02 -0.21 0.116 0.816 Treg L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 6.11e-01 0.0577 0.113 0.816 Treg L2
ENSG00000134644 PUM1 -294925 sc-eQTL 7.17e-01 0.0329 0.0906 0.816 Treg L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 1.67e-01 0.143 0.103 0.816 Treg L2
ENSG00000162517 PEF1 -873830 sc-eQTL 7.50e-01 0.0357 0.112 0.816 Treg L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 5.50e-01 0.0632 0.106 0.816 Treg L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 7.40e-01 0.0351 0.106 0.816 Treg L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 5.58e-01 -0.0723 0.123 0.824 cDC L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 1.54e-01 -0.19 0.133 0.824 cDC L2
ENSG00000134644 PUM1 -294925 sc-eQTL 3.56e-01 -0.106 0.114 0.824 cDC L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 4.91e-01 -0.0554 0.0802 0.824 cDC L2
ENSG00000162517 PEF1 -873830 sc-eQTL 6.50e-01 0.0528 0.116 0.824 cDC L2
ENSG00000168528 SERINC2 -638499 sc-eQTL 4.94e-01 0.0705 0.103 0.824 cDC L2
ENSG00000284543 LINC01226 -735160 sc-eQTL 3.52e-02 -0.212 0.1 0.824 cDC L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 8.49e-01 0.0208 0.109 0.824 cDC L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 6.26e-01 0.0453 0.093 0.816 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 8.33e-01 0.0219 0.104 0.816 cMono_IL1B L2
ENSG00000134644 PUM1 -294925 sc-eQTL 2.54e-01 -0.08 0.07 0.816 cMono_IL1B L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 5.39e-01 0.0379 0.0616 0.816 cMono_IL1B L2
ENSG00000162512 SDC3 -137692 sc-eQTL 1.82e-01 -0.155 0.116 0.816 cMono_IL1B L2
ENSG00000162517 PEF1 -873830 sc-eQTL 9.90e-01 0.00118 0.0949 0.816 cMono_IL1B L2
ENSG00000168528 SERINC2 -638499 sc-eQTL 8.48e-01 -0.0226 0.118 0.816 cMono_IL1B L2
ENSG00000284543 LINC01226 -735160 sc-eQTL 3.69e-01 0.0933 0.104 0.816 cMono_IL1B L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 8.34e-01 -0.0204 0.0969 0.816 cMono_IL1B L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 8.30e-01 0.021 0.0977 0.816 cMono_S100A L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 5.78e-01 0.0643 0.115 0.816 cMono_S100A L2
ENSG00000134644 PUM1 -294925 sc-eQTL 3.78e-02 -0.173 0.0826 0.816 cMono_S100A L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 4.00e-01 -0.054 0.0641 0.816 cMono_S100A L2
ENSG00000162512 SDC3 -137692 sc-eQTL 9.10e-01 -0.0125 0.111 0.816 cMono_S100A L2
ENSG00000162517 PEF1 -873830 sc-eQTL 2.54e-01 -0.114 0.0998 0.816 cMono_S100A L2
ENSG00000168528 SERINC2 -638499 sc-eQTL 7.35e-01 -0.0398 0.117 0.816 cMono_S100A L2
ENSG00000284543 LINC01226 -735160 sc-eQTL 5.69e-01 -0.0543 0.0953 0.816 cMono_S100A L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 6.73e-01 -0.0404 0.0957 0.816 cMono_S100A L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 5.05e-01 0.0915 0.137 0.812 gdT L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 1.75e-01 0.159 0.117 0.812 gdT L2
ENSG00000134644 PUM1 -294925 sc-eQTL 9.93e-01 -0.00107 0.121 0.812 gdT L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 4.80e-01 0.0932 0.132 0.812 gdT L2
ENSG00000162517 PEF1 -873830 sc-eQTL 1.85e-01 -0.16 0.12 0.812 gdT L2
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 9.72e-01 0.00425 0.122 0.812 gdT L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 8.37e-01 0.0244 0.118 0.812 gdT L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 8.73e-01 -0.0177 0.11 0.822 intMono L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 5.82e-01 -0.0652 0.118 0.822 intMono L2
ENSG00000134644 PUM1 -294925 sc-eQTL 7.89e-01 -0.0269 0.1 0.822 intMono L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 6.43e-01 0.0366 0.0788 0.822 intMono L2
ENSG00000162512 SDC3 -137692 sc-eQTL 8.54e-01 -0.0199 0.108 0.822 intMono L2
ENSG00000162517 PEF1 -873830 sc-eQTL 8.13e-01 0.0269 0.113 0.822 intMono L2
ENSG00000168528 SERINC2 -638499 sc-eQTL 8.33e-01 0.0238 0.113 0.822 intMono L2
ENSG00000284543 LINC01226 -735160 sc-eQTL 2.99e-01 -0.111 0.107 0.822 intMono L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 6.21e-01 0.0531 0.107 0.822 intMono L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 9.99e-01 7.61e-05 0.103 0.814 ncMono L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 9.93e-01 -0.000991 0.11 0.814 ncMono L2
ENSG00000134644 PUM1 -294925 sc-eQTL 7.93e-01 -0.0236 0.0901 0.814 ncMono L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 2.79e-02 0.179 0.0809 0.814 ncMono L2
ENSG00000162512 SDC3 -137692 sc-eQTL 9.04e-01 0.0111 0.0918 0.814 ncMono L2
ENSG00000162517 PEF1 -873830 sc-eQTL 3.01e-01 -0.109 0.105 0.814 ncMono L2
ENSG00000168528 SERINC2 -638499 sc-eQTL 8.70e-01 -0.0165 0.1 0.814 ncMono L2
ENSG00000284543 LINC01226 -735160 sc-eQTL 7.51e-01 -0.0319 0.1 0.814 ncMono L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 7.41e-01 0.0343 0.104 0.814 ncMono L2
ENSG00000060688 SNRNP40 -525722 sc-eQTL 6.05e-01 0.0613 0.118 0.816 pDC L2
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 6.91e-01 -0.0516 0.13 0.816 pDC L2
ENSG00000134644 PUM1 -294925 sc-eQTL 2.89e-01 -0.114 0.107 0.816 pDC L2
ENSG00000162511 LAPTM5 13292 sc-eQTL 1.13e-01 0.158 0.0992 0.816 pDC L2
ENSG00000162517 PEF1 -873830 sc-eQTL 8.79e-01 0.0197 0.13 0.816 pDC L2
ENSG00000168528 SERINC2 -638499 sc-eQTL 1.33e-01 0.182 0.12 0.816 pDC L2
ENSG00000284543 LINC01226 -735160 sc-eQTL 8.53e-01 -0.0175 0.0942 0.816 pDC L2
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.19e-01 -0.11 0.11 0.816 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -525722 sc-eQTL 8.94e-01 -0.0155 0.116 0.816 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 8.14e-01 0.0228 0.0966 0.816 B_Memory LOneK1K
ENSG00000134644 PUM1 -294925 sc-eQTL 1.81e-02 -0.201 0.0845 0.816 B_Memory LOneK1K
ENSG00000162510 MATN1 47481 sc-eQTL 3.72e-01 -0.0871 0.0974 0.816 B_Memory LOneK1K
ENSG00000162511 LAPTM5 13292 sc-eQTL 3.75e-02 -0.127 0.0607 0.816 B_Memory LOneK1K
ENSG00000162517 PEF1 -873830 sc-eQTL 2.62e-01 -0.114 0.101 0.816 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 6.72e-01 -0.0343 0.0811 0.816 B_Memory LOneK1K
ENSG00000287510 AL137857.1 39373 sc-eQTL 4.09e-01 -0.073 0.0882 0.816 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -525722 sc-eQTL 7.12e-01 -0.039 0.105 0.816 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 9.72e-01 0.00295 0.0834 0.816 B_Naive LOneK1K
ENSG00000134644 PUM1 -294925 sc-eQTL 5.27e-01 0.05 0.0789 0.816 B_Naive LOneK1K
ENSG00000162510 MATN1 47481 sc-eQTL 5.55e-01 0.0449 0.0759 0.816 B_Naive LOneK1K
ENSG00000162511 LAPTM5 13292 sc-eQTL 8.46e-01 -0.0104 0.0535 0.816 B_Naive LOneK1K
ENSG00000162517 PEF1 -873830 sc-eQTL 9.74e-01 0.00318 0.0977 0.816 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 2.67e-02 -0.152 0.0683 0.816 B_Naive LOneK1K
ENSG00000287510 AL137857.1 39373 sc-eQTL 3.55e-02 -0.172 0.0812 0.816 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -525722 sc-eQTL 7.14e-01 0.0326 0.0887 0.816 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 5.11e-01 0.0661 0.1 0.816 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -294925 sc-eQTL 8.54e-02 -0.11 0.0637 0.816 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 13292 sc-eQTL 7.77e-01 0.016 0.0563 0.816 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -137692 sc-eQTL 1.28e-01 -0.175 0.114 0.816 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -873830 sc-eQTL 5.27e-01 -0.0512 0.0807 0.816 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -638499 sc-eQTL 8.23e-01 -0.0264 0.118 0.816 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -735160 sc-eQTL 3.79e-01 0.0853 0.0968 0.816 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 39373 sc-eQTL 8.16e-01 -0.0211 0.0908 0.816 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -525722 sc-eQTL 6.13e-01 0.049 0.0966 0.815 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 7.96e-01 -0.0274 0.106 0.815 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -294925 sc-eQTL 9.37e-01 -0.00687 0.0867 0.815 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 13292 sc-eQTL 1.83e-01 0.0922 0.0691 0.815 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -137692 sc-eQTL 5.63e-01 0.0586 0.101 0.815 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -873830 sc-eQTL 7.99e-01 -0.0235 0.092 0.815 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -638499 sc-eQTL 8.05e-01 0.0259 0.105 0.815 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -735160 sc-eQTL 8.12e-01 -0.0237 0.0997 0.815 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 39373 sc-eQTL 5.06e-01 0.0664 0.0997 0.815 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -525722 sc-eQTL 2.62e-01 -0.124 0.11 0.815 NK_CD56dim LOneK1K
ENSG00000121753 ADGRB2 -993827 sc-eQTL 5.37e-01 0.0581 0.094 0.815 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -525916 sc-eQTL 1.94e-01 -0.0978 0.0751 0.815 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -294925 sc-eQTL 5.21e-01 -0.0531 0.0826 0.815 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 13292 sc-eQTL 2.00e-04 0.338 0.0894 0.815 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -873830 sc-eQTL 1.11e-01 0.112 0.0697 0.815 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 52562 sc-eQTL 5.46e-01 0.0644 0.106 0.815 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 39373 sc-eQTL 5.86e-01 0.0502 0.0919 0.815 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 13292 eQTL 2.38e-19 0.106 0.0115 0.0 0.0 0.207
ENSG00000162512 SDC3 -137692 eQTL 2.61e-05 -0.124 0.0293 0.0 0.0 0.207
ENSG00000186056 MATN1-AS1 52562 eQTL 8.25e-04 -0.0505 0.0151 0.00118 0.0 0.207

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 \N -993827 2.66e-07 1.11e-07 3.28e-08 1.68e-07 1.03e-07 9.13e-08 1.36e-07 5.29e-08 1.32e-07 3.99e-08 1.59e-07 7.49e-08 1.21e-07 6.1e-08 4.77e-08 7.76e-08 5.2e-08 1.06e-07 5.12e-08 2.85e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.33e-07 1.03e-07 1.11e-07 8.49e-08 1.05e-07 1.08e-07 9.5e-08 3.82e-08 2.75e-08 8.26e-08 9.88e-08 4.23e-08 5.64e-08 8.91e-08 8.14e-08 3.69e-08 4.69e-08 1.42e-07 4.34e-08 0.0 1.09e-07 1.78e-08 1.37e-07 4.7e-09 4.61e-08
ENSG00000162511 LAPTM5 13292 0.00014 1.86e-05 3.99e-06 9.4e-06 2.53e-06 1.61e-05 2.04e-05 1.85e-06 1.64e-05 6.67e-06 1.68e-05 6.8e-06 2.86e-05 6.34e-06 4.35e-06 9.17e-06 7.72e-06 1.77e-05 3.79e-06 3.12e-06 7.03e-06 1.84e-05 1.42e-05 4.11e-06 2.07e-05 4.5e-06 7.34e-06 4.8e-06 1.62e-05 1.28e-05 1.16e-05 9.64e-07 1.32e-06 3.85e-06 5.12e-06 2.36e-06 1.85e-06 1.83e-06 2.91e-06 1.26e-06 1.01e-06 1.89e-05 2.71e-06 1.6e-07 9.19e-07 1.63e-06 2.21e-06 6.92e-07 4.64e-07
ENSG00000162512 SDC3 -137692 1.46e-05 2.61e-06 5.15e-07 2.02e-06 3.73e-07 1.54e-06 1.8e-06 3.56e-07 1.89e-06 9.75e-07 1.89e-06 1.32e-06 3.39e-06 1.42e-06 8.99e-07 1.45e-06 9.17e-07 2.1e-06 9.64e-07 6.02e-07 8.63e-07 3.23e-06 1.6e-06 6.61e-07 3.3e-06 9.37e-07 1.36e-06 8.98e-07 1.92e-06 1.26e-06 1.98e-06 3.44e-07 3.95e-07 1.26e-06 1.02e-06 3.91e-07 6.72e-07 4.49e-07 1.11e-06 2.42e-07 3.05e-07 2.82e-06 5.92e-07 1.93e-08 3e-07 3.46e-07 6.24e-07 2.18e-07 2.1e-07