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Genes within 1Mb (chr1:30758486:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -538302 sc-eQTL 5.31e-01 0.0502 0.0799 0.592 B L1
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 3.35e-01 -0.0617 0.0639 0.592 B L1
ENSG00000134644 PUM1 -307505 sc-eQTL 5.31e-01 0.0337 0.0537 0.592 B L1
ENSG00000162510 MATN1 34901 sc-eQTL 1.98e-03 -0.173 0.0552 0.592 B L1
ENSG00000162511 LAPTM5 712 sc-eQTL 7.48e-01 0.0143 0.0442 0.592 B L1
ENSG00000162517 PEF1 -886410 sc-eQTL 9.49e-01 -0.00425 0.0668 0.592 B L1
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 5.80e-02 -0.098 0.0514 0.592 B L1
ENSG00000287510 AL137857.1 26793 sc-eQTL 9.25e-01 0.0058 0.0614 0.592 B L1
ENSG00000060688 SNRNP40 -538302 sc-eQTL 7.98e-01 0.0174 0.0679 0.592 CD4T L1
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 6.81e-01 0.0219 0.053 0.592 CD4T L1
ENSG00000134644 PUM1 -307505 sc-eQTL 1.67e-01 0.0652 0.047 0.592 CD4T L1
ENSG00000162511 LAPTM5 712 sc-eQTL 1.96e-03 -0.16 0.0511 0.592 CD4T L1
ENSG00000162517 PEF1 -886410 sc-eQTL 9.11e-01 -0.00611 0.0547 0.592 CD4T L1
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 5.41e-01 0.0287 0.0468 0.592 CD4T L1
ENSG00000287510 AL137857.1 26793 sc-eQTL 1.89e-01 0.0735 0.0558 0.592 CD4T L1
ENSG00000060688 SNRNP40 -538302 sc-eQTL 9.38e-01 -0.00706 0.0906 0.592 CD8T L1
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 2.20e-01 -0.0738 0.0601 0.592 CD8T L1
ENSG00000134644 PUM1 -307505 sc-eQTL 1.94e-01 0.0689 0.0529 0.592 CD8T L1
ENSG00000162511 LAPTM5 712 sc-eQTL 9.40e-01 0.00385 0.0515 0.592 CD8T L1
ENSG00000162517 PEF1 -886410 sc-eQTL 2.08e-01 0.0799 0.0632 0.592 CD8T L1
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 7.08e-01 -0.0226 0.0604 0.592 CD8T L1
ENSG00000287510 AL137857.1 26793 sc-eQTL 9.78e-01 0.00213 0.0759 0.592 CD8T L1
ENSG00000060688 SNRNP40 -538302 sc-eQTL 9.01e-01 -0.0101 0.081 0.592 DC L1
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 1.28e-01 -0.146 0.0954 0.592 DC L1
ENSG00000134644 PUM1 -307505 sc-eQTL 8.89e-01 0.0105 0.0751 0.592 DC L1
ENSG00000162511 LAPTM5 712 sc-eQTL 1.97e-01 0.0692 0.0534 0.592 DC L1
ENSG00000162517 PEF1 -886410 sc-eQTL 2.33e-01 0.104 0.0867 0.592 DC L1
ENSG00000168528 SERINC2 -651079 sc-eQTL 9.57e-01 0.00479 0.0885 0.592 DC L1
ENSG00000284543 LINC01226 -747740 sc-eQTL 5.52e-01 0.0349 0.0586 0.592 DC L1
ENSG00000287510 AL137857.1 26793 sc-eQTL 8.56e-01 0.0154 0.0849 0.592 DC L1
ENSG00000060688 SNRNP40 -538302 sc-eQTL 6.38e-01 -0.0293 0.0622 0.592 Mono L1
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 8.04e-01 -0.0192 0.0772 0.592 Mono L1
ENSG00000134644 PUM1 -307505 sc-eQTL 6.17e-01 -0.0248 0.0494 0.592 Mono L1
ENSG00000162511 LAPTM5 712 sc-eQTL 7.05e-02 0.0821 0.0452 0.592 Mono L1
ENSG00000162512 SDC3 -150272 sc-eQTL 3.92e-01 -0.0749 0.0873 0.592 Mono L1
ENSG00000162517 PEF1 -886410 sc-eQTL 6.70e-01 -0.0262 0.0613 0.592 Mono L1
ENSG00000168528 SERINC2 -651079 sc-eQTL 7.50e-01 -0.03 0.0938 0.592 Mono L1
ENSG00000284543 LINC01226 -747740 sc-eQTL 6.86e-01 0.0335 0.0826 0.592 Mono L1
ENSG00000287510 AL137857.1 26793 sc-eQTL 1.13e-01 0.114 0.0718 0.592 Mono L1
ENSG00000060688 SNRNP40 -538302 sc-eQTL 3.92e-01 -0.0751 0.0875 0.59 NK L1
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 5.23e-01 -0.0384 0.0599 0.59 NK L1
ENSG00000134644 PUM1 -307505 sc-eQTL 8.36e-01 0.013 0.0629 0.59 NK L1
ENSG00000162511 LAPTM5 712 sc-eQTL 5.41e-08 0.381 0.0675 0.59 NK L1
ENSG00000162517 PEF1 -886410 sc-eQTL 2.64e-01 0.0591 0.0527 0.59 NK L1
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 1.29e-01 -0.123 0.0809 0.59 NK L1
ENSG00000287510 AL137857.1 26793 sc-eQTL 3.74e-03 0.216 0.0736 0.59 NK L1
ENSG00000060688 SNRNP40 -538302 sc-eQTL 1.50e-01 0.0947 0.0655 0.592 Other_T L1
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 9.81e-01 0.00172 0.0704 0.592 Other_T L1
ENSG00000134644 PUM1 -307505 sc-eQTL 5.21e-01 0.0407 0.0632 0.592 Other_T L1
ENSG00000162511 LAPTM5 712 sc-eQTL 5.51e-01 -0.0309 0.0518 0.592 Other_T L1
ENSG00000162517 PEF1 -886410 sc-eQTL 1.14e-01 0.109 0.0689 0.592 Other_T L1
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 2.76e-02 -0.186 0.084 0.592 Other_T L1
ENSG00000287510 AL137857.1 26793 sc-eQTL 2.87e-01 -0.0941 0.0882 0.592 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -538302 sc-eQTL 7.46e-01 -0.0327 0.1 0.582 B_Activated L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 2.47e-01 -0.117 0.101 0.582 B_Activated L2
ENSG00000134644 PUM1 -307505 sc-eQTL 1.32e-01 -0.142 0.0936 0.582 B_Activated L2
ENSG00000162510 MATN1 34901 sc-eQTL 4.05e-01 -0.0685 0.0821 0.582 B_Activated L2
ENSG00000162511 LAPTM5 712 sc-eQTL 2.32e-01 -0.0686 0.0572 0.582 B_Activated L2
ENSG00000162517 PEF1 -886410 sc-eQTL 8.23e-01 -0.0218 0.0977 0.582 B_Activated L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 8.18e-02 -0.161 0.0919 0.582 B_Activated L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 6.81e-01 -0.0338 0.082 0.582 B_Activated L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 5.16e-01 -0.0629 0.0967 0.592 B_Intermediate L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 8.92e-01 -0.011 0.0807 0.592 B_Intermediate L2
ENSG00000134644 PUM1 -307505 sc-eQTL 6.52e-01 -0.0344 0.0761 0.592 B_Intermediate L2
ENSG00000162510 MATN1 34901 sc-eQTL 1.23e-01 -0.122 0.0788 0.592 B_Intermediate L2
ENSG00000162511 LAPTM5 712 sc-eQTL 4.99e-01 -0.0329 0.0486 0.592 B_Intermediate L2
ENSG00000162517 PEF1 -886410 sc-eQTL 6.15e-01 0.0454 0.0902 0.592 B_Intermediate L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 1.53e-01 0.0974 0.0679 0.592 B_Intermediate L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 5.36e-01 -0.0473 0.0763 0.592 B_Intermediate L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 3.56e-01 0.0867 0.0937 0.595 B_Memory L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 5.89e-01 -0.0468 0.0865 0.595 B_Memory L2
ENSG00000134644 PUM1 -307505 sc-eQTL 1.32e-01 -0.113 0.0749 0.595 B_Memory L2
ENSG00000162510 MATN1 34901 sc-eQTL 8.42e-01 -0.0143 0.072 0.595 B_Memory L2
ENSG00000162511 LAPTM5 712 sc-eQTL 2.31e-01 -0.0764 0.0636 0.595 B_Memory L2
ENSG00000162517 PEF1 -886410 sc-eQTL 8.31e-01 -0.0182 0.0853 0.595 B_Memory L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 9.54e-01 -0.00427 0.0731 0.595 B_Memory L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 4.12e-01 -0.0702 0.0855 0.595 B_Memory L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 6.84e-02 0.156 0.0854 0.592 B_Naive1 L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 6.37e-01 -0.0351 0.0743 0.592 B_Naive1 L2
ENSG00000134644 PUM1 -307505 sc-eQTL 2.00e-01 0.084 0.0653 0.592 B_Naive1 L2
ENSG00000162510 MATN1 34901 sc-eQTL 2.70e-02 -0.146 0.0658 0.592 B_Naive1 L2
ENSG00000162511 LAPTM5 712 sc-eQTL 6.79e-01 0.0184 0.0444 0.592 B_Naive1 L2
ENSG00000162517 PEF1 -886410 sc-eQTL 8.99e-01 0.01 0.0783 0.592 B_Naive1 L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 5.15e-02 -0.113 0.0578 0.592 B_Naive1 L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 6.37e-01 0.0341 0.0721 0.592 B_Naive1 L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 5.54e-01 -0.0545 0.0919 0.594 B_Naive2 L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 8.14e-01 -0.0179 0.076 0.594 B_Naive2 L2
ENSG00000134644 PUM1 -307505 sc-eQTL 9.76e-01 -0.00219 0.0743 0.594 B_Naive2 L2
ENSG00000162510 MATN1 34901 sc-eQTL 8.09e-01 -0.0173 0.0714 0.594 B_Naive2 L2
ENSG00000162511 LAPTM5 712 sc-eQTL 6.19e-01 -0.0241 0.0484 0.594 B_Naive2 L2
ENSG00000162517 PEF1 -886410 sc-eQTL 6.81e-01 0.0363 0.0881 0.594 B_Naive2 L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 3.28e-02 -0.15 0.0698 0.594 B_Naive2 L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 4.37e-01 0.0593 0.0761 0.594 B_Naive2 L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 7.76e-02 -0.161 0.0909 0.589 CD4_CTL L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 9.62e-01 -0.0043 0.0901 0.589 CD4_CTL L2
ENSG00000134644 PUM1 -307505 sc-eQTL 8.67e-01 0.0148 0.0883 0.589 CD4_CTL L2
ENSG00000162511 LAPTM5 712 sc-eQTL 5.70e-01 0.0447 0.0787 0.589 CD4_CTL L2
ENSG00000162517 PEF1 -886410 sc-eQTL 8.53e-01 -0.015 0.0807 0.589 CD4_CTL L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 5.32e-01 -0.0539 0.086 0.589 CD4_CTL L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 3.79e-01 0.0669 0.0759 0.589 CD4_CTL L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 7.71e-01 -0.0207 0.0713 0.592 CD4_Naive L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 6.30e-01 0.0304 0.0632 0.592 CD4_Naive L2
ENSG00000134644 PUM1 -307505 sc-eQTL 2.14e-01 0.0626 0.0503 0.592 CD4_Naive L2
ENSG00000162511 LAPTM5 712 sc-eQTL 4.14e-04 -0.188 0.0525 0.592 CD4_Naive L2
ENSG00000162517 PEF1 -886410 sc-eQTL 3.44e-01 -0.0561 0.0592 0.592 CD4_Naive L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 9.86e-01 0.000962 0.0549 0.592 CD4_Naive L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 2.69e-01 0.0697 0.0628 0.592 CD4_Naive L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 2.11e-01 0.112 0.0895 0.592 CD4_TCM L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 8.16e-01 0.0169 0.0724 0.592 CD4_TCM L2
ENSG00000134644 PUM1 -307505 sc-eQTL 6.19e-01 0.0319 0.0641 0.592 CD4_TCM L2
ENSG00000162511 LAPTM5 712 sc-eQTL 5.63e-02 -0.101 0.0527 0.592 CD4_TCM L2
ENSG00000162517 PEF1 -886410 sc-eQTL 7.13e-01 0.0262 0.0712 0.592 CD4_TCM L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 2.76e-01 0.0734 0.0673 0.592 CD4_TCM L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 4.18e-01 0.0609 0.075 0.592 CD4_TCM L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 2.98e-01 0.0931 0.0892 0.592 CD4_TEM L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 4.10e-01 -0.0703 0.0851 0.592 CD4_TEM L2
ENSG00000134644 PUM1 -307505 sc-eQTL 7.58e-01 0.0219 0.071 0.592 CD4_TEM L2
ENSG00000162511 LAPTM5 712 sc-eQTL 3.35e-01 -0.0693 0.0716 0.592 CD4_TEM L2
ENSG00000162517 PEF1 -886410 sc-eQTL 2.52e-01 0.0921 0.0802 0.592 CD4_TEM L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 6.77e-01 0.035 0.084 0.592 CD4_TEM L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 1.77e-01 0.112 0.0824 0.592 CD4_TEM L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 8.49e-01 0.0189 0.0989 0.592 CD8_CTL L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 3.75e-01 -0.0673 0.0757 0.592 CD8_CTL L2
ENSG00000134644 PUM1 -307505 sc-eQTL 8.15e-01 0.0172 0.0737 0.592 CD8_CTL L2
ENSG00000162511 LAPTM5 712 sc-eQTL 3.71e-02 0.169 0.0808 0.592 CD8_CTL L2
ENSG00000162517 PEF1 -886410 sc-eQTL 2.43e-01 0.083 0.0708 0.592 CD8_CTL L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 6.43e-01 -0.0398 0.0857 0.592 CD8_CTL L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 1.45e-01 0.117 0.0803 0.592 CD8_CTL L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 2.99e-01 -0.0917 0.088 0.592 CD8_Naive L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 1.38e-01 -0.113 0.0757 0.592 CD8_Naive L2
ENSG00000134644 PUM1 -307505 sc-eQTL 8.64e-01 0.0105 0.0612 0.592 CD8_Naive L2
ENSG00000162511 LAPTM5 712 sc-eQTL 1.13e-02 -0.148 0.0578 0.592 CD8_Naive L2
ENSG00000162517 PEF1 -886410 sc-eQTL 6.73e-01 -0.0345 0.0815 0.592 CD8_Naive L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 3.50e-01 -0.0685 0.0731 0.592 CD8_Naive L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 9.64e-01 0.00357 0.0797 0.592 CD8_Naive L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 9.65e-02 -0.166 0.0994 0.6 CD8_TCM L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 3.43e-01 -0.0871 0.0916 0.6 CD8_TCM L2
ENSG00000134644 PUM1 -307505 sc-eQTL 2.85e-01 0.0923 0.086 0.6 CD8_TCM L2
ENSG00000162511 LAPTM5 712 sc-eQTL 5.82e-01 -0.0497 0.0903 0.6 CD8_TCM L2
ENSG00000162517 PEF1 -886410 sc-eQTL 7.39e-01 0.0308 0.0923 0.6 CD8_TCM L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 5.51e-01 0.0498 0.0835 0.6 CD8_TCM L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 3.56e-01 0.0781 0.0843 0.6 CD8_TCM L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 6.65e-01 0.0407 0.0938 0.594 CD8_TEM L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 7.76e-01 0.0257 0.09 0.594 CD8_TEM L2
ENSG00000134644 PUM1 -307505 sc-eQTL 2.54e-01 0.105 0.0917 0.594 CD8_TEM L2
ENSG00000162511 LAPTM5 712 sc-eQTL 5.41e-01 -0.0529 0.0864 0.594 CD8_TEM L2
ENSG00000162517 PEF1 -886410 sc-eQTL 2.45e-01 0.0946 0.0812 0.594 CD8_TEM L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 8.60e-01 -0.0158 0.0898 0.594 CD8_TEM L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 7.46e-01 0.0264 0.0812 0.594 CD8_TEM L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 7.63e-01 0.0286 0.0949 0.591 MAIT L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 8.03e-01 0.021 0.0841 0.591 MAIT L2
ENSG00000134644 PUM1 -307505 sc-eQTL 1.84e-01 0.107 0.0803 0.591 MAIT L2
ENSG00000162511 LAPTM5 712 sc-eQTL 1.81e-01 -0.102 0.0757 0.591 MAIT L2
ENSG00000162517 PEF1 -886410 sc-eQTL 5.99e-01 0.0439 0.0835 0.591 MAIT L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 9.39e-02 -0.142 0.0841 0.591 MAIT L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 8.93e-01 0.0117 0.0873 0.591 MAIT L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 6.43e-01 -0.0445 0.0959 0.591 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 8.96e-02 -0.137 0.0805 0.591 NK_CD56bright L2
ENSG00000134644 PUM1 -307505 sc-eQTL 8.05e-01 0.0211 0.0851 0.591 NK_CD56bright L2
ENSG00000162511 LAPTM5 712 sc-eQTL 2.37e-06 0.386 0.0794 0.591 NK_CD56bright L2
ENSG00000162517 PEF1 -886410 sc-eQTL 6.81e-01 -0.0336 0.0815 0.591 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 5.91e-01 -0.0454 0.0843 0.591 NK_CD56bright L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 3.11e-01 0.0842 0.0829 0.591 NK_CD56bright L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 7.01e-01 -0.0353 0.0918 0.588 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 5.77e-01 0.0379 0.0679 0.588 NK_CD56dim L2
ENSG00000134644 PUM1 -307505 sc-eQTL 9.89e-01 0.000923 0.0697 0.588 NK_CD56dim L2
ENSG00000162511 LAPTM5 712 sc-eQTL 7.63e-06 0.325 0.0708 0.588 NK_CD56dim L2
ENSG00000162517 PEF1 -886410 sc-eQTL 8.76e-01 -0.0103 0.0661 0.588 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 9.36e-02 -0.156 0.0925 0.588 NK_CD56dim L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 2.04e-02 0.177 0.0758 0.588 NK_CD56dim L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 1.90e-01 -0.129 0.0984 0.587 NK_HLA L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 6.74e-01 -0.0372 0.0882 0.587 NK_HLA L2
ENSG00000134644 PUM1 -307505 sc-eQTL 6.24e-02 0.16 0.0852 0.587 NK_HLA L2
ENSG00000162511 LAPTM5 712 sc-eQTL 1.47e-04 0.306 0.0791 0.587 NK_HLA L2
ENSG00000162517 PEF1 -886410 sc-eQTL 6.52e-01 -0.0418 0.0924 0.587 NK_HLA L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 3.73e-01 0.0779 0.0871 0.587 NK_HLA L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 9.21e-01 -0.00839 0.0844 0.587 NK_HLA L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 6.48e-01 -0.041 0.0896 0.588 NK_cytokine L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 5.85e-01 -0.0382 0.0699 0.588 NK_cytokine L2
ENSG00000134644 PUM1 -307505 sc-eQTL 4.83e-01 -0.0531 0.0756 0.588 NK_cytokine L2
ENSG00000162511 LAPTM5 712 sc-eQTL 7.76e-09 0.463 0.0769 0.588 NK_cytokine L2
ENSG00000162517 PEF1 -886410 sc-eQTL 1.46e-01 0.103 0.0706 0.588 NK_cytokine L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 8.55e-01 -0.0162 0.0883 0.588 NK_cytokine L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 4.91e-01 0.0566 0.0821 0.588 NK_cytokine L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 3.62e-01 -0.0943 0.103 0.559 PB L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 4.29e-01 -0.095 0.12 0.559 PB L2
ENSG00000134644 PUM1 -307505 sc-eQTL 1.81e-01 0.139 0.103 0.559 PB L2
ENSG00000162510 MATN1 34901 sc-eQTL 9.45e-01 -0.00668 0.0972 0.559 PB L2
ENSG00000162511 LAPTM5 712 sc-eQTL 1.72e-01 0.0947 0.0688 0.559 PB L2
ENSG00000162517 PEF1 -886410 sc-eQTL 9.63e-01 0.00493 0.107 0.559 PB L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 4.11e-01 -0.0783 0.0947 0.559 PB L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 4.93e-01 0.0695 0.101 0.559 PB L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 3.76e-01 0.0621 0.0699 0.596 Pro_T L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 5.22e-01 0.057 0.0889 0.596 Pro_T L2
ENSG00000134644 PUM1 -307505 sc-eQTL 6.82e-01 0.034 0.083 0.596 Pro_T L2
ENSG00000162511 LAPTM5 712 sc-eQTL 5.69e-01 0.0339 0.0595 0.596 Pro_T L2
ENSG00000162517 PEF1 -886410 sc-eQTL 9.03e-01 0.0106 0.0874 0.596 Pro_T L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 9.10e-01 -0.0094 0.0832 0.596 Pro_T L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 5.59e-01 0.0447 0.0765 0.596 Pro_T L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 4.27e-01 -0.0733 0.092 0.592 Treg L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 6.93e-01 -0.0352 0.0891 0.592 Treg L2
ENSG00000134644 PUM1 -307505 sc-eQTL 7.58e-01 0.022 0.0713 0.592 Treg L2
ENSG00000162511 LAPTM5 712 sc-eQTL 7.59e-01 -0.0251 0.0816 0.592 Treg L2
ENSG00000162517 PEF1 -886410 sc-eQTL 8.37e-01 -0.0181 0.0882 0.592 Treg L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 2.45e-01 0.0968 0.0829 0.592 Treg L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 4.13e-01 0.0681 0.083 0.592 Treg L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 5.28e-01 0.0602 0.0951 0.595 cDC L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 1.74e-01 -0.14 0.103 0.595 cDC L2
ENSG00000134644 PUM1 -307505 sc-eQTL 5.46e-01 0.0535 0.0884 0.595 cDC L2
ENSG00000162511 LAPTM5 712 sc-eQTL 2.63e-01 0.0694 0.0618 0.595 cDC L2
ENSG00000162517 PEF1 -886410 sc-eQTL 5.50e-01 0.0537 0.0898 0.595 cDC L2
ENSG00000168528 SERINC2 -651079 sc-eQTL 8.18e-01 -0.0183 0.0796 0.595 cDC L2
ENSG00000284543 LINC01226 -747740 sc-eQTL 5.88e-01 0.0424 0.0782 0.595 cDC L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 9.50e-01 0.00528 0.0843 0.595 cDC L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 8.76e-01 0.0117 0.0747 0.592 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 9.20e-01 -0.00838 0.0833 0.592 cMono_IL1B L2
ENSG00000134644 PUM1 -307505 sc-eQTL 5.52e-01 -0.0336 0.0564 0.592 cMono_IL1B L2
ENSG00000162511 LAPTM5 712 sc-eQTL 1.62e-01 0.0692 0.0493 0.592 cMono_IL1B L2
ENSG00000162512 SDC3 -150272 sc-eQTL 8.21e-01 0.0211 0.0932 0.592 cMono_IL1B L2
ENSG00000162517 PEF1 -886410 sc-eQTL 3.28e-01 0.0745 0.076 0.592 cMono_IL1B L2
ENSG00000168528 SERINC2 -651079 sc-eQTL 5.40e-01 -0.0579 0.0943 0.592 cMono_IL1B L2
ENSG00000284543 LINC01226 -747740 sc-eQTL 2.40e-01 0.098 0.0832 0.592 cMono_IL1B L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 1.47e-01 0.113 0.0774 0.592 cMono_IL1B L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 3.09e-01 -0.0801 0.0785 0.592 cMono_S100A L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 9.85e-01 -0.00173 0.093 0.592 cMono_S100A L2
ENSG00000134644 PUM1 -307505 sc-eQTL 7.45e-01 -0.0219 0.0672 0.592 cMono_S100A L2
ENSG00000162511 LAPTM5 712 sc-eQTL 6.37e-01 0.0244 0.0516 0.592 cMono_S100A L2
ENSG00000162512 SDC3 -150272 sc-eQTL 4.81e-01 -0.063 0.0891 0.592 cMono_S100A L2
ENSG00000162517 PEF1 -886410 sc-eQTL 1.26e-01 -0.123 0.0801 0.592 cMono_S100A L2
ENSG00000168528 SERINC2 -651079 sc-eQTL 2.77e-01 -0.103 0.0942 0.592 cMono_S100A L2
ENSG00000284543 LINC01226 -747740 sc-eQTL 7.42e-01 -0.0253 0.0767 0.592 cMono_S100A L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 3.41e-01 0.0734 0.0769 0.592 cMono_S100A L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 9.16e-01 0.0126 0.119 0.6 gdT L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 1.15e-01 0.161 0.102 0.6 gdT L2
ENSG00000134644 PUM1 -307505 sc-eQTL 1.87e-01 -0.139 0.105 0.6 gdT L2
ENSG00000162511 LAPTM5 712 sc-eQTL 5.35e-01 0.0714 0.115 0.6 gdT L2
ENSG00000162517 PEF1 -886410 sc-eQTL 5.55e-01 0.0621 0.105 0.6 gdT L2
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 4.40e-01 -0.0819 0.106 0.6 gdT L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 6.80e-01 -0.0425 0.103 0.6 gdT L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 3.96e-01 -0.0752 0.0885 0.6 intMono L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 5.85e-01 0.0521 0.0952 0.6 intMono L2
ENSG00000134644 PUM1 -307505 sc-eQTL 2.10e-01 0.101 0.0805 0.6 intMono L2
ENSG00000162511 LAPTM5 712 sc-eQTL 2.80e-02 0.139 0.0627 0.6 intMono L2
ENSG00000162512 SDC3 -150272 sc-eQTL 2.42e-01 -0.102 0.0866 0.6 intMono L2
ENSG00000162517 PEF1 -886410 sc-eQTL 4.27e-01 0.0726 0.0911 0.6 intMono L2
ENSG00000168528 SERINC2 -651079 sc-eQTL 6.29e-01 -0.0439 0.0909 0.6 intMono L2
ENSG00000284543 LINC01226 -747740 sc-eQTL 7.82e-01 -0.0239 0.0861 0.6 intMono L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 5.36e-01 0.0533 0.0861 0.6 intMono L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 8.50e-01 0.0156 0.0827 0.59 ncMono L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 5.46e-01 -0.0532 0.0881 0.59 ncMono L2
ENSG00000134644 PUM1 -307505 sc-eQTL 1.57e-01 -0.102 0.0717 0.59 ncMono L2
ENSG00000162511 LAPTM5 712 sc-eQTL 2.35e-01 0.0776 0.0652 0.59 ncMono L2
ENSG00000162512 SDC3 -150272 sc-eQTL 6.02e-01 -0.0383 0.0733 0.59 ncMono L2
ENSG00000162517 PEF1 -886410 sc-eQTL 1.79e-01 -0.113 0.0838 0.59 ncMono L2
ENSG00000168528 SERINC2 -651079 sc-eQTL 4.27e-01 0.0637 0.08 0.59 ncMono L2
ENSG00000284543 LINC01226 -747740 sc-eQTL 6.22e-01 -0.0395 0.08 0.59 ncMono L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 3.93e-01 0.0709 0.0828 0.59 ncMono L2
ENSG00000060688 SNRNP40 -538302 sc-eQTL 1.76e-01 -0.13 0.0956 0.607 pDC L2
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 7.10e-01 -0.0394 0.106 0.607 pDC L2
ENSG00000134644 PUM1 -307505 sc-eQTL 4.82e-01 -0.0616 0.0874 0.607 pDC L2
ENSG00000162511 LAPTM5 712 sc-eQTL 3.24e-01 0.0802 0.0811 0.607 pDC L2
ENSG00000162517 PEF1 -886410 sc-eQTL 8.16e-01 0.0246 0.106 0.607 pDC L2
ENSG00000168528 SERINC2 -651079 sc-eQTL 8.84e-01 0.0144 0.0987 0.607 pDC L2
ENSG00000284543 LINC01226 -747740 sc-eQTL 4.63e-01 -0.0563 0.0765 0.607 pDC L2
ENSG00000287510 AL137857.1 26793 sc-eQTL 7.80e-01 -0.0253 0.0901 0.607 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -538302 sc-eQTL 7.62e-01 -0.028 0.0924 0.592 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 8.93e-01 -0.0104 0.077 0.592 B_Memory LOneK1K
ENSG00000134644 PUM1 -307505 sc-eQTL 5.05e-02 -0.133 0.0676 0.592 B_Memory LOneK1K
ENSG00000162510 MATN1 34901 sc-eQTL 8.64e-02 -0.133 0.0772 0.592 B_Memory LOneK1K
ENSG00000162511 LAPTM5 712 sc-eQTL 6.35e-02 -0.0904 0.0485 0.592 B_Memory LOneK1K
ENSG00000162517 PEF1 -886410 sc-eQTL 7.22e-01 0.0288 0.0809 0.592 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 9.26e-01 -0.00597 0.0646 0.592 B_Memory LOneK1K
ENSG00000287510 AL137857.1 26793 sc-eQTL 9.98e-02 -0.116 0.07 0.592 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -538302 sc-eQTL 3.63e-01 0.0761 0.0835 0.592 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 7.07e-01 -0.0249 0.0661 0.592 B_Naive LOneK1K
ENSG00000134644 PUM1 -307505 sc-eQTL 2.43e-01 0.073 0.0624 0.592 B_Naive LOneK1K
ENSG00000162510 MATN1 34901 sc-eQTL 2.12e-02 -0.138 0.0595 0.592 B_Naive LOneK1K
ENSG00000162511 LAPTM5 712 sc-eQTL 8.54e-01 0.00782 0.0424 0.592 B_Naive LOneK1K
ENSG00000162517 PEF1 -886410 sc-eQTL 8.45e-01 0.0152 0.0775 0.592 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 4.61e-03 -0.154 0.0537 0.592 B_Naive LOneK1K
ENSG00000287510 AL137857.1 26793 sc-eQTL 5.31e-01 0.0408 0.065 0.592 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -538302 sc-eQTL 5.76e-01 -0.0398 0.071 0.592 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 7.96e-01 -0.0208 0.0804 0.592 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -307505 sc-eQTL 5.92e-01 -0.0276 0.0513 0.592 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 712 sc-eQTL 1.32e-01 0.0679 0.0449 0.592 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -150272 sc-eQTL 7.29e-01 -0.0319 0.092 0.592 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -886410 sc-eQTL 6.43e-01 -0.03 0.0647 0.592 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -651079 sc-eQTL 4.66e-01 -0.069 0.0946 0.592 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -747740 sc-eQTL 3.36e-01 0.0746 0.0775 0.592 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 26793 sc-eQTL 7.90e-02 0.127 0.0721 0.592 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -538302 sc-eQTL 7.76e-01 -0.0223 0.078 0.591 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 9.60e-01 -0.00431 0.0853 0.591 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -307505 sc-eQTL 9.79e-01 0.00186 0.0699 0.591 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 712 sc-eQTL 8.84e-02 0.0951 0.0555 0.591 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -150272 sc-eQTL 5.76e-01 -0.0457 0.0816 0.591 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -886410 sc-eQTL 8.10e-01 0.0178 0.0742 0.591 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -651079 sc-eQTL 8.86e-01 0.0122 0.0847 0.591 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -747740 sc-eQTL 5.37e-01 -0.0497 0.0803 0.591 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 26793 sc-eQTL 3.97e-01 0.0682 0.0804 0.591 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -538302 sc-eQTL 3.21e-01 -0.0874 0.0879 0.588 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -538496 sc-eQTL 6.82e-01 -0.0247 0.0601 0.588 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -307505 sc-eQTL 7.69e-01 0.0194 0.0659 0.588 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 712 sc-eQTL 2.18e-07 0.37 0.0691 0.588 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -886410 sc-eQTL 1.20e-01 0.0869 0.0556 0.588 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 39982 sc-eQTL 1.46e-01 -0.123 0.0845 0.588 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 26793 sc-eQTL 8.12e-03 0.193 0.0721 0.588 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 712 eQTL 3.79e-32 0.115 0.00938 0.00621 0.0131 0.426
ENSG00000168528 SERINC2 -651079 eQTL 5.65e-05 -0.156 0.0387 0.0 0.0 0.426

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 712 0.000415 0.000403 5.74e-05 0.000119 7.3e-05 0.000156 0.000373 5.76e-05 0.000342 0.000165 0.000405 0.000169 0.000484 0.00015 7.17e-05 0.000248 0.000144 0.000268 9.48e-05 6.73e-05 0.000191 0.000387 0.000317 9.83e-05 0.000398 0.000128 0.000174 0.000132 0.000322 0.000172 0.000214 2.76e-05 3.37e-05 6.98e-05 7.2e-05 5.24e-05 3.05e-05 2.92e-05 5.01e-05 2.62e-05 2.06e-05 0.000445 5.41e-05 2.99e-06 4.71e-05 4.56e-05 5.27e-05 2.35e-05 1.87e-05