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Genes within 1Mb (chr1:30757279:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -539509 sc-eQTL 9.44e-01 -0.00728 0.103 0.827 B L1
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 9.61e-01 0.00404 0.0825 0.827 B L1
ENSG00000134644 PUM1 -308712 sc-eQTL 5.97e-01 -0.0366 0.0692 0.827 B L1
ENSG00000162510 MATN1 33694 sc-eQTL 7.55e-01 0.0228 0.0728 0.827 B L1
ENSG00000162511 LAPTM5 -495 sc-eQTL 9.78e-01 0.00161 0.057 0.827 B L1
ENSG00000162517 PEF1 -887617 sc-eQTL 3.91e-01 -0.0739 0.0859 0.827 B L1
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 6.95e-02 -0.121 0.0663 0.827 B L1
ENSG00000287510 AL137857.1 25586 sc-eQTL 4.20e-02 -0.16 0.0783 0.827 B L1
ENSG00000060688 SNRNP40 -539509 sc-eQTL 4.95e-01 -0.0621 0.0908 0.827 CD4T L1
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 8.66e-01 0.012 0.071 0.827 CD4T L1
ENSG00000134644 PUM1 -308712 sc-eQTL 4.44e-01 0.0484 0.0631 0.827 CD4T L1
ENSG00000162511 LAPTM5 -495 sc-eQTL 4.90e-01 -0.0484 0.07 0.827 CD4T L1
ENSG00000162517 PEF1 -887617 sc-eQTL 3.01e-01 -0.0758 0.0731 0.827 CD4T L1
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 3.70e-01 -0.0562 0.0626 0.827 CD4T L1
ENSG00000287510 AL137857.1 25586 sc-eQTL 4.15e-01 0.0612 0.075 0.827 CD4T L1
ENSG00000060688 SNRNP40 -539509 sc-eQTL 3.37e-01 -0.114 0.119 0.827 CD8T L1
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 6.64e-01 0.0345 0.0791 0.827 CD8T L1
ENSG00000134644 PUM1 -308712 sc-eQTL 8.32e-01 -0.0148 0.0697 0.827 CD8T L1
ENSG00000162511 LAPTM5 -495 sc-eQTL 2.05e-01 0.0858 0.0674 0.827 CD8T L1
ENSG00000162517 PEF1 -887617 sc-eQTL 2.84e-01 -0.0892 0.0832 0.827 CD8T L1
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 1.69e-01 -0.109 0.079 0.827 CD8T L1
ENSG00000287510 AL137857.1 25586 sc-eQTL 4.90e-01 -0.0689 0.0996 0.827 CD8T L1
ENSG00000060688 SNRNP40 -539509 sc-eQTL 6.87e-01 0.0435 0.108 0.829 DC L1
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 1.19e-01 -0.199 0.127 0.829 DC L1
ENSG00000134644 PUM1 -308712 sc-eQTL 6.31e-01 -0.0482 0.1 0.829 DC L1
ENSG00000162511 LAPTM5 -495 sc-eQTL 6.00e-01 0.0376 0.0716 0.829 DC L1
ENSG00000162517 PEF1 -887617 sc-eQTL 4.23e-01 0.0931 0.116 0.829 DC L1
ENSG00000168528 SERINC2 -652286 sc-eQTL 3.71e-01 0.106 0.118 0.829 DC L1
ENSG00000284543 LINC01226 -748947 sc-eQTL 8.34e-01 0.0165 0.0782 0.829 DC L1
ENSG00000287510 AL137857.1 25586 sc-eQTL 4.31e-01 -0.0893 0.113 0.829 DC L1
ENSG00000060688 SNRNP40 -539509 sc-eQTL 3.44e-01 0.0762 0.0803 0.827 Mono L1
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 6.52e-01 0.045 0.0997 0.827 Mono L1
ENSG00000134644 PUM1 -308712 sc-eQTL 1.38e-01 -0.0948 0.0636 0.827 Mono L1
ENSG00000162511 LAPTM5 -495 sc-eQTL 5.35e-01 0.0365 0.0588 0.827 Mono L1
ENSG00000162512 SDC3 -151479 sc-eQTL 2.29e-01 -0.136 0.113 0.827 Mono L1
ENSG00000162517 PEF1 -887617 sc-eQTL 6.83e-01 -0.0325 0.0793 0.827 Mono L1
ENSG00000168528 SERINC2 -652286 sc-eQTL 7.61e-01 -0.037 0.121 0.827 Mono L1
ENSG00000284543 LINC01226 -748947 sc-eQTL 7.73e-01 0.0309 0.107 0.827 Mono L1
ENSG00000287510 AL137857.1 25586 sc-eQTL 8.46e-01 -0.0182 0.0934 0.827 Mono L1
ENSG00000060688 SNRNP40 -539509 sc-eQTL 3.12e-01 -0.115 0.113 0.826 NK L1
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 3.20e-01 -0.0773 0.0775 0.826 NK L1
ENSG00000134644 PUM1 -308712 sc-eQTL 3.16e-01 -0.0817 0.0813 0.826 NK L1
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.25e-06 0.443 0.0887 0.826 NK L1
ENSG00000162517 PEF1 -887617 sc-eQTL 1.67e-01 0.0945 0.0682 0.826 NK L1
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 9.07e-01 -0.0123 0.105 0.826 NK L1
ENSG00000287510 AL137857.1 25586 sc-eQTL 3.77e-01 0.086 0.0972 0.826 NK L1
ENSG00000060688 SNRNP40 -539509 sc-eQTL 4.31e-01 0.0691 0.0876 0.827 Other_T L1
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 3.12e-01 0.0947 0.0935 0.827 Other_T L1
ENSG00000134644 PUM1 -308712 sc-eQTL 3.31e-01 0.082 0.0841 0.827 Other_T L1
ENSG00000162511 LAPTM5 -495 sc-eQTL 3.89e-01 -0.0596 0.069 0.827 Other_T L1
ENSG00000162517 PEF1 -887617 sc-eQTL 4.90e-02 0.181 0.0914 0.827 Other_T L1
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 2.25e-02 -0.257 0.112 0.827 Other_T L1
ENSG00000287510 AL137857.1 25586 sc-eQTL 9.96e-01 0.000552 0.118 0.827 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -539509 sc-eQTL 5.07e-01 0.088 0.133 0.824 B_Activated L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 5.91e-01 -0.072 0.134 0.824 B_Activated L2
ENSG00000134644 PUM1 -308712 sc-eQTL 1.40e-01 -0.183 0.124 0.824 B_Activated L2
ENSG00000162510 MATN1 33694 sc-eQTL 4.47e-01 -0.0826 0.108 0.824 B_Activated L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.26e-01 -0.116 0.0753 0.824 B_Activated L2
ENSG00000162517 PEF1 -887617 sc-eQTL 2.60e-01 -0.145 0.129 0.824 B_Activated L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 1.62e-01 -0.171 0.122 0.824 B_Activated L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 7.01e-02 -0.195 0.107 0.824 B_Activated L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 8.85e-01 -0.0182 0.126 0.828 B_Intermediate L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 5.89e-01 -0.0567 0.105 0.828 B_Intermediate L2
ENSG00000134644 PUM1 -308712 sc-eQTL 4.16e-02 -0.201 0.0978 0.828 B_Intermediate L2
ENSG00000162510 MATN1 33694 sc-eQTL 2.03e-01 -0.131 0.102 0.828 B_Intermediate L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 8.79e-02 -0.107 0.0627 0.828 B_Intermediate L2
ENSG00000162517 PEF1 -887617 sc-eQTL 7.55e-01 -0.0365 0.117 0.828 B_Intermediate L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 5.27e-01 0.056 0.0885 0.828 B_Intermediate L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 4.91e-01 -0.0683 0.099 0.828 B_Intermediate L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 3.83e-01 0.107 0.123 0.825 B_Memory L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 7.56e-01 0.0352 0.113 0.825 B_Memory L2
ENSG00000134644 PUM1 -308712 sc-eQTL 5.80e-01 -0.0546 0.0984 0.825 B_Memory L2
ENSG00000162510 MATN1 33694 sc-eQTL 7.12e-01 -0.0349 0.0942 0.825 B_Memory L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 4.42e-01 -0.0642 0.0834 0.825 B_Memory L2
ENSG00000162517 PEF1 -887617 sc-eQTL 5.92e-02 -0.21 0.111 0.825 B_Memory L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 5.80e-01 -0.0529 0.0955 0.825 B_Memory L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 9.70e-01 0.00417 0.112 0.825 B_Memory L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 3.07e-01 0.115 0.112 0.827 B_Naive1 L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 7.63e-01 0.0293 0.0972 0.827 B_Naive1 L2
ENSG00000134644 PUM1 -308712 sc-eQTL 6.23e-01 0.0422 0.0857 0.827 B_Naive1 L2
ENSG00000162510 MATN1 33694 sc-eQTL 3.74e-01 0.0774 0.0869 0.827 B_Naive1 L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 6.95e-01 0.0228 0.0581 0.827 B_Naive1 L2
ENSG00000162517 PEF1 -887617 sc-eQTL 8.79e-01 0.0156 0.102 0.827 B_Naive1 L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 1.69e-01 -0.105 0.076 0.827 B_Naive1 L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 3.31e-02 -0.2 0.0933 0.827 B_Naive1 L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 2.02e-01 -0.151 0.118 0.826 B_Naive2 L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 5.18e-01 -0.0634 0.098 0.826 B_Naive2 L2
ENSG00000134644 PUM1 -308712 sc-eQTL 8.57e-01 -0.0174 0.096 0.826 B_Naive2 L2
ENSG00000162510 MATN1 33694 sc-eQTL 7.22e-01 0.0329 0.0921 0.826 B_Naive2 L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 4.88e-01 -0.0434 0.0625 0.826 B_Naive2 L2
ENSG00000162517 PEF1 -887617 sc-eQTL 9.11e-01 0.0128 0.114 0.826 B_Naive2 L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 6.14e-02 -0.17 0.0903 0.826 B_Naive2 L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 6.20e-01 -0.0489 0.0984 0.826 B_Naive2 L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 6.59e-02 -0.221 0.12 0.823 CD4_CTL L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 6.35e-01 0.0563 0.119 0.823 CD4_CTL L2
ENSG00000134644 PUM1 -308712 sc-eQTL 1.49e-01 -0.168 0.116 0.823 CD4_CTL L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.91e-01 0.136 0.103 0.823 CD4_CTL L2
ENSG00000162517 PEF1 -887617 sc-eQTL 6.52e-01 -0.048 0.106 0.823 CD4_CTL L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 9.01e-01 -0.0141 0.113 0.823 CD4_CTL L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 2.97e-01 0.104 0.0998 0.823 CD4_CTL L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 5.57e-01 -0.0562 0.0954 0.827 CD4_Naive L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 4.50e-01 0.0639 0.0845 0.827 CD4_Naive L2
ENSG00000134644 PUM1 -308712 sc-eQTL 8.90e-01 0.00935 0.0676 0.827 CD4_Naive L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.83e-01 -0.0964 0.0721 0.827 CD4_Naive L2
ENSG00000162517 PEF1 -887617 sc-eQTL 7.78e-02 -0.14 0.0788 0.827 CD4_Naive L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 2.72e-01 -0.0807 0.0733 0.827 CD4_Naive L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 5.20e-01 0.0543 0.0843 0.827 CD4_Naive L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 7.91e-01 0.0318 0.12 0.827 CD4_TCM L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 9.19e-01 -0.00985 0.0965 0.827 CD4_TCM L2
ENSG00000134644 PUM1 -308712 sc-eQTL 6.91e-02 0.155 0.0847 0.827 CD4_TCM L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 7.56e-01 0.022 0.0708 0.827 CD4_TCM L2
ENSG00000162517 PEF1 -887617 sc-eQTL 6.47e-01 -0.0435 0.0949 0.827 CD4_TCM L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 4.92e-01 0.0619 0.0898 0.827 CD4_TCM L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 6.89e-01 -0.0402 0.1 0.827 CD4_TCM L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 1.75e-01 0.161 0.118 0.827 CD4_TEM L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 3.19e-01 -0.113 0.113 0.827 CD4_TEM L2
ENSG00000134644 PUM1 -308712 sc-eQTL 9.96e-01 0.000414 0.0942 0.827 CD4_TEM L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 6.77e-01 -0.0396 0.0952 0.827 CD4_TEM L2
ENSG00000162517 PEF1 -887617 sc-eQTL 6.20e-01 0.053 0.107 0.827 CD4_TEM L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 7.41e-01 -0.0369 0.111 0.827 CD4_TEM L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 1.03e-01 0.178 0.109 0.827 CD4_TEM L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 1.81e-01 -0.173 0.129 0.827 CD8_CTL L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 7.67e-01 0.0294 0.0992 0.827 CD8_CTL L2
ENSG00000134644 PUM1 -308712 sc-eQTL 4.71e-01 0.0695 0.0962 0.827 CD8_CTL L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.15e-02 0.268 0.105 0.827 CD8_CTL L2
ENSG00000162517 PEF1 -887617 sc-eQTL 5.97e-01 -0.0492 0.0928 0.827 CD8_CTL L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 8.41e-01 -0.0225 0.112 0.827 CD8_CTL L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 4.73e-01 0.0757 0.105 0.827 CD8_CTL L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 4.64e-01 -0.0862 0.117 0.827 CD8_Naive L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 5.97e-01 -0.0536 0.101 0.827 CD8_Naive L2
ENSG00000134644 PUM1 -308712 sc-eQTL 1.45e-01 -0.119 0.0812 0.827 CD8_Naive L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.41e-01 -0.115 0.0778 0.827 CD8_Naive L2
ENSG00000162517 PEF1 -887617 sc-eQTL 3.99e-01 -0.0917 0.109 0.827 CD8_Naive L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 2.73e-01 -0.107 0.0974 0.827 CD8_Naive L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 2.46e-01 -0.123 0.106 0.827 CD8_Naive L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 6.91e-01 -0.0529 0.133 0.826 CD8_TCM L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 8.31e-02 -0.21 0.121 0.826 CD8_TCM L2
ENSG00000134644 PUM1 -308712 sc-eQTL 2.35e-02 0.258 0.113 0.826 CD8_TCM L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 9.83e-01 0.00252 0.12 0.826 CD8_TCM L2
ENSG00000162517 PEF1 -887617 sc-eQTL 5.58e-01 -0.0717 0.122 0.826 CD8_TCM L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 5.93e-01 0.0593 0.111 0.826 CD8_TCM L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 4.49e-01 0.085 0.112 0.826 CD8_TCM L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 8.49e-01 -0.0239 0.126 0.824 CD8_TEM L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 7.73e-01 0.0348 0.12 0.824 CD8_TEM L2
ENSG00000134644 PUM1 -308712 sc-eQTL 1.69e-01 0.169 0.122 0.824 CD8_TEM L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 3.85e-01 -0.101 0.115 0.824 CD8_TEM L2
ENSG00000162517 PEF1 -887617 sc-eQTL 7.54e-01 0.0342 0.109 0.824 CD8_TEM L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 7.64e-02 -0.212 0.119 0.824 CD8_TEM L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 8.55e-03 -0.284 0.107 0.824 CD8_TEM L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 4.48e-01 0.0944 0.124 0.825 MAIT L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 4.30e-01 0.087 0.11 0.825 MAIT L2
ENSG00000134644 PUM1 -308712 sc-eQTL 4.12e-01 0.0867 0.106 0.825 MAIT L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 4.12e-01 -0.0819 0.0996 0.825 MAIT L2
ENSG00000162517 PEF1 -887617 sc-eQTL 3.18e-01 0.109 0.109 0.825 MAIT L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 1.20e-01 -0.172 0.11 0.825 MAIT L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 1.90e-01 0.15 0.114 0.825 MAIT L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 9.50e-01 0.008 0.127 0.827 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 1.08e-01 -0.172 0.107 0.827 NK_CD56bright L2
ENSG00000134644 PUM1 -308712 sc-eQTL 9.50e-01 0.00709 0.113 0.827 NK_CD56bright L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.08e-04 0.423 0.107 0.827 NK_CD56bright L2
ENSG00000162517 PEF1 -887617 sc-eQTL 4.69e-01 0.0783 0.108 0.827 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 1.65e-01 -0.155 0.111 0.827 NK_CD56bright L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 7.96e-01 -0.0285 0.11 0.827 NK_CD56bright L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 8.70e-01 0.0196 0.119 0.825 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 5.46e-01 -0.0534 0.0882 0.825 NK_CD56dim L2
ENSG00000134644 PUM1 -308712 sc-eQTL 6.54e-01 -0.0407 0.0906 0.825 NK_CD56dim L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 5.29e-05 0.384 0.0929 0.825 NK_CD56dim L2
ENSG00000162517 PEF1 -887617 sc-eQTL 9.24e-01 -0.00826 0.086 0.825 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 8.49e-01 -0.0231 0.121 0.825 NK_CD56dim L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 5.07e-01 0.0663 0.0998 0.825 NK_CD56dim L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 8.07e-02 -0.22 0.125 0.826 NK_HLA L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 7.84e-01 0.0309 0.113 0.826 NK_HLA L2
ENSG00000134644 PUM1 -308712 sc-eQTL 1.13e-01 0.174 0.109 0.826 NK_HLA L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 2.99e-03 0.308 0.103 0.826 NK_HLA L2
ENSG00000162517 PEF1 -887617 sc-eQTL 7.52e-01 -0.0373 0.118 0.826 NK_HLA L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 4.10e-01 0.092 0.111 0.826 NK_HLA L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 5.45e-01 -0.0654 0.108 0.826 NK_HLA L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 2.95e-01 -0.122 0.117 0.825 NK_cytokine L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 3.08e-01 -0.093 0.091 0.825 NK_cytokine L2
ENSG00000134644 PUM1 -308712 sc-eQTL 2.11e-01 -0.123 0.0983 0.825 NK_cytokine L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 2.73e-04 0.39 0.105 0.825 NK_cytokine L2
ENSG00000162517 PEF1 -887617 sc-eQTL 6.30e-02 0.172 0.0918 0.825 NK_cytokine L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 9.09e-01 -0.0132 0.115 0.825 NK_cytokine L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 9.25e-01 -0.0101 0.107 0.825 NK_cytokine L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 3.15e-01 -0.135 0.134 0.819 PB L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 4.87e-01 -0.108 0.155 0.819 PB L2
ENSG00000134644 PUM1 -308712 sc-eQTL 3.42e-01 0.128 0.135 0.819 PB L2
ENSG00000162510 MATN1 33694 sc-eQTL 9.15e-01 -0.0135 0.126 0.819 PB L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.80e-01 0.12 0.0893 0.819 PB L2
ENSG00000162517 PEF1 -887617 sc-eQTL 5.12e-01 0.0909 0.138 0.819 PB L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 6.26e-01 -0.0601 0.123 0.819 PB L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 6.59e-01 0.0579 0.131 0.819 PB L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 8.86e-01 0.0131 0.0912 0.824 Pro_T L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 9.05e-01 0.0138 0.116 0.824 Pro_T L2
ENSG00000134644 PUM1 -308712 sc-eQTL 7.99e-01 0.0275 0.108 0.824 Pro_T L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 7.69e-01 0.0228 0.0775 0.824 Pro_T L2
ENSG00000162517 PEF1 -887617 sc-eQTL 4.27e-01 -0.0904 0.114 0.824 Pro_T L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 9.66e-01 0.00467 0.108 0.824 Pro_T L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 4.00e-01 -0.0838 0.0994 0.824 Pro_T L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 2.48e-02 -0.27 0.12 0.827 Treg L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 9.05e-01 0.014 0.117 0.827 Treg L2
ENSG00000134644 PUM1 -308712 sc-eQTL 9.54e-01 0.00542 0.0937 0.827 Treg L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 2.56e-01 0.122 0.107 0.827 Treg L2
ENSG00000162517 PEF1 -887617 sc-eQTL 9.11e-01 0.013 0.116 0.827 Treg L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 6.87e-01 0.0441 0.109 0.827 Treg L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 8.04e-01 -0.0271 0.109 0.827 Treg L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 5.70e-01 -0.0724 0.127 0.834 cDC L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 1.94e-01 -0.179 0.137 0.834 cDC L2
ENSG00000134644 PUM1 -308712 sc-eQTL 5.15e-01 -0.0773 0.118 0.834 cDC L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 3.89e-01 -0.0716 0.0829 0.834 cDC L2
ENSG00000162517 PEF1 -887617 sc-eQTL 5.36e-01 0.0745 0.12 0.834 cDC L2
ENSG00000168528 SERINC2 -652286 sc-eQTL 6.71e-01 0.0454 0.107 0.834 cDC L2
ENSG00000284543 LINC01226 -748947 sc-eQTL 3.00e-02 -0.226 0.103 0.834 cDC L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 9.23e-01 0.0109 0.113 0.834 cDC L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 5.93e-01 0.0515 0.0963 0.827 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 8.36e-01 0.0223 0.108 0.827 cMono_IL1B L2
ENSG00000134644 PUM1 -308712 sc-eQTL 3.83e-01 -0.0635 0.0726 0.827 cMono_IL1B L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 4.86e-01 0.0445 0.0638 0.827 cMono_IL1B L2
ENSG00000162512 SDC3 -151479 sc-eQTL 1.54e-01 -0.171 0.12 0.827 cMono_IL1B L2
ENSG00000162517 PEF1 -887617 sc-eQTL 9.43e-01 0.00703 0.0983 0.827 cMono_IL1B L2
ENSG00000168528 SERINC2 -652286 sc-eQTL 5.86e-01 -0.0664 0.122 0.827 cMono_IL1B L2
ENSG00000284543 LINC01226 -748947 sc-eQTL 3.72e-01 0.0961 0.107 0.827 cMono_IL1B L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 9.04e-01 0.0121 0.1 0.827 cMono_IL1B L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 6.77e-01 0.0424 0.101 0.827 cMono_S100A L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 5.60e-01 0.0698 0.12 0.827 cMono_S100A L2
ENSG00000134644 PUM1 -308712 sc-eQTL 2.05e-02 -0.2 0.0855 0.827 cMono_S100A L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 5.58e-01 -0.039 0.0665 0.827 cMono_S100A L2
ENSG00000162512 SDC3 -151479 sc-eQTL 5.53e-01 -0.0683 0.115 0.827 cMono_S100A L2
ENSG00000162517 PEF1 -887617 sc-eQTL 3.45e-01 -0.0981 0.104 0.827 cMono_S100A L2
ENSG00000168528 SERINC2 -652286 sc-eQTL 5.17e-01 -0.079 0.122 0.827 cMono_S100A L2
ENSG00000284543 LINC01226 -748947 sc-eQTL 7.97e-01 -0.0255 0.0989 0.827 cMono_S100A L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 8.39e-01 -0.0202 0.0993 0.827 cMono_S100A L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 8.01e-01 0.0362 0.144 0.827 gdT L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 1.88e-02 0.288 0.121 0.827 gdT L2
ENSG00000134644 PUM1 -308712 sc-eQTL 8.32e-01 -0.027 0.127 0.827 gdT L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 5.54e-01 0.082 0.138 0.827 gdT L2
ENSG00000162517 PEF1 -887617 sc-eQTL 2.20e-01 -0.155 0.126 0.827 gdT L2
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 8.20e-01 0.0291 0.128 0.827 gdT L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 5.39e-01 0.0761 0.123 0.827 gdT L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 6.81e-01 -0.0472 0.115 0.831 intMono L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 8.05e-01 -0.0304 0.123 0.831 intMono L2
ENSG00000134644 PUM1 -308712 sc-eQTL 7.44e-01 0.0342 0.104 0.831 intMono L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 6.21e-01 0.0406 0.0819 0.831 intMono L2
ENSG00000162512 SDC3 -151479 sc-eQTL 6.41e-01 -0.0524 0.112 0.831 intMono L2
ENSG00000162517 PEF1 -887617 sc-eQTL 4.82e-01 0.083 0.118 0.831 intMono L2
ENSG00000168528 SERINC2 -652286 sc-eQTL 9.85e-01 -0.00223 0.118 0.831 intMono L2
ENSG00000284543 LINC01226 -748947 sc-eQTL 2.79e-01 -0.12 0.111 0.831 intMono L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 9.36e-01 -0.00902 0.111 0.831 intMono L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 7.41e-01 -0.0354 0.107 0.826 ncMono L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 9.52e-01 -0.00687 0.114 0.826 ncMono L2
ENSG00000134644 PUM1 -308712 sc-eQTL 2.99e-01 -0.0968 0.093 0.826 ncMono L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.07e-02 0.215 0.0833 0.826 ncMono L2
ENSG00000162512 SDC3 -151479 sc-eQTL 9.03e-01 -0.0116 0.0949 0.826 ncMono L2
ENSG00000162517 PEF1 -887617 sc-eQTL 1.94e-01 -0.141 0.108 0.826 ncMono L2
ENSG00000168528 SERINC2 -652286 sc-eQTL 9.60e-01 -0.00526 0.104 0.826 ncMono L2
ENSG00000284543 LINC01226 -748947 sc-eQTL 5.60e-01 -0.0603 0.103 0.826 ncMono L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 9.75e-01 0.00343 0.107 0.826 ncMono L2
ENSG00000060688 SNRNP40 -539509 sc-eQTL 3.14e-01 0.125 0.124 0.825 pDC L2
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 5.64e-01 -0.079 0.137 0.825 pDC L2
ENSG00000134644 PUM1 -308712 sc-eQTL 1.60e-01 -0.159 0.113 0.825 pDC L2
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.01e-01 0.173 0.104 0.825 pDC L2
ENSG00000162517 PEF1 -887617 sc-eQTL 9.91e-01 -0.00153 0.137 0.825 pDC L2
ENSG00000168528 SERINC2 -652286 sc-eQTL 1.76e-01 0.173 0.127 0.825 pDC L2
ENSG00000284543 LINC01226 -748947 sc-eQTL 7.77e-01 -0.0281 0.0992 0.825 pDC L2
ENSG00000287510 AL137857.1 25586 sc-eQTL 2.94e-01 -0.123 0.116 0.825 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -539509 sc-eQTL 9.55e-01 -0.00683 0.121 0.827 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 8.48e-01 -0.0193 0.1 0.827 B_Memory LOneK1K
ENSG00000134644 PUM1 -308712 sc-eQTL 1.46e-02 -0.216 0.0877 0.827 B_Memory LOneK1K
ENSG00000162510 MATN1 33694 sc-eQTL 4.69e-01 -0.0735 0.101 0.827 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -495 sc-eQTL 9.55e-02 -0.106 0.0633 0.827 B_Memory LOneK1K
ENSG00000162517 PEF1 -887617 sc-eQTL 2.51e-01 -0.121 0.105 0.827 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 6.14e-01 -0.0426 0.0843 0.827 B_Memory LOneK1K
ENSG00000287510 AL137857.1 25586 sc-eQTL 3.29e-01 -0.0897 0.0917 0.827 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -539509 sc-eQTL 9.57e-01 -0.00584 0.109 0.827 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 8.76e-01 0.0135 0.0864 0.827 B_Naive LOneK1K
ENSG00000134644 PUM1 -308712 sc-eQTL 5.22e-01 0.0524 0.0816 0.827 B_Naive LOneK1K
ENSG00000162510 MATN1 33694 sc-eQTL 4.65e-01 0.0575 0.0786 0.827 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -495 sc-eQTL 9.41e-01 -0.00408 0.0554 0.827 B_Naive LOneK1K
ENSG00000162517 PEF1 -887617 sc-eQTL 7.88e-01 0.0272 0.101 0.827 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 3.79e-02 -0.148 0.0708 0.827 B_Naive LOneK1K
ENSG00000287510 AL137857.1 25586 sc-eQTL 7.44e-02 -0.151 0.0844 0.827 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -539509 sc-eQTL 4.02e-01 0.0772 0.092 0.827 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 4.83e-01 0.0733 0.104 0.827 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -308712 sc-eQTL 7.48e-02 -0.118 0.0661 0.827 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -495 sc-eQTL 5.70e-01 0.0333 0.0585 0.827 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -151479 sc-eQTL 1.07e-01 -0.192 0.119 0.827 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -887617 sc-eQTL 5.81e-01 -0.0464 0.0839 0.827 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -652286 sc-eQTL 5.63e-01 -0.0712 0.123 0.827 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -748947 sc-eQTL 3.93e-01 0.086 0.101 0.827 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 25586 sc-eQTL 9.95e-01 0.000586 0.0943 0.827 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -539509 sc-eQTL 9.03e-01 0.0123 0.1 0.825 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 9.10e-01 -0.0124 0.11 0.825 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -308712 sc-eQTL 7.45e-01 -0.0293 0.09 0.825 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -495 sc-eQTL 1.01e-01 0.118 0.0716 0.825 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -151479 sc-eQTL 7.58e-01 0.0325 0.105 0.825 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -887617 sc-eQTL 8.41e-01 -0.0192 0.0956 0.825 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -652286 sc-eQTL 7.36e-01 0.0367 0.109 0.825 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -748947 sc-eQTL 5.26e-01 -0.0657 0.103 0.825 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 25586 sc-eQTL 8.44e-01 0.0205 0.104 0.825 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -539509 sc-eQTL 3.30e-01 -0.111 0.114 0.825 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -539703 sc-eQTL 4.07e-01 -0.0646 0.0778 0.825 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -308712 sc-eQTL 5.61e-01 -0.0496 0.0852 0.825 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -495 sc-eQTL 5.00e-06 0.425 0.0907 0.825 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -887617 sc-eQTL 1.88e-01 0.0952 0.0721 0.825 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 38775 sc-eQTL 8.56e-01 0.02 0.11 0.825 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 25586 sc-eQTL 5.12e-01 0.0623 0.0948 0.825 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -495 eQTL 5.1299999999999997e-23 0.116 0.0114 0.00457 0.00702 0.197
ENSG00000162512 SDC3 -151479 eQTL 1.85e-05 -0.127 0.0294 0.0 0.0 0.197
ENSG00000186056 MATN1-AS1 38775 eQTL 3.13e-04 -0.0546 0.0151 0.00184 0.0 0.197

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -495 0.000391 0.000482 7.23e-05 0.000157 0.000127 0.000161 0.000444 9.92e-05 0.000415 0.000215 0.000495 0.00023 0.000572 0.00021 0.000104 0.000303 0.000198 0.000288 0.000134 9.49e-05 0.000252 0.00048 0.000351 0.00014 0.000502 0.000194 0.00027 0.000196 0.000385 0.000217 0.000252 3.59e-05 4.23e-05 8.41e-05 0.000112 6.98e-05 4.63e-05 4.16e-05 7.21e-05 4.64e-05 2.86e-05 0.000493 6.29e-05 5.73e-06 6.23e-05 7.34e-05 7.1e-05 3.58e-05 3.09e-05
ENSG00000162512 SDC3 -151479 1.25e-05 1.3e-05 3.02e-06 7.73e-06 1.66e-06 3.79e-06 9.67e-06 9.23e-07 9.7e-06 4.19e-06 1.06e-05 3.28e-06 1.44e-05 3.66e-06 2.66e-06 4.62e-06 3.91e-06 4.46e-06 1.62e-06 4.21e-06 4.99e-06 8.16e-06 6.78e-06 3.32e-06 1.24e-05 2.58e-06 4.16e-06 4.05e-06 7.05e-06 6.28e-06 4.32e-06 1.05e-06 1.14e-06 4.95e-06 5.55e-06 2.65e-06 1.91e-06 1.99e-06 2.2e-06 8.7e-07 1.46e-06 1.71e-05 2.79e-06 5.07e-07 7.93e-07 2.52e-06 1.04e-06 6.92e-07 5.98e-07