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Genes within 1Mb (chr1:30754594:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -542194 sc-eQTL 2.99e-01 0.0867 0.0833 0.69 B L1
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 2.00e-01 -0.0857 0.0666 0.69 B L1
ENSG00000134644 PUM1 -311397 sc-eQTL 3.78e-01 0.0495 0.056 0.69 B L1
ENSG00000162510 MATN1 31009 sc-eQTL 6.58e-02 -0.108 0.0585 0.69 B L1
ENSG00000162511 LAPTM5 -3180 sc-eQTL 6.13e-01 0.0234 0.0462 0.69 B L1
ENSG00000162517 PEF1 -890302 sc-eQTL 7.96e-01 -0.0181 0.0697 0.69 B L1
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 1.12e-02 -0.136 0.0533 0.69 B L1
ENSG00000287510 AL137857.1 22901 sc-eQTL 1.28e-01 -0.0973 0.0638 0.69 B L1
ENSG00000060688 SNRNP40 -542194 sc-eQTL 8.69e-01 -0.0119 0.0721 0.69 CD4T L1
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.65e-01 0.0412 0.0563 0.69 CD4T L1
ENSG00000134644 PUM1 -311397 sc-eQTL 1.78e-01 0.0676 0.0499 0.69 CD4T L1
ENSG00000162511 LAPTM5 -3180 sc-eQTL 7.19e-04 -0.186 0.0541 0.69 CD4T L1
ENSG00000162517 PEF1 -890302 sc-eQTL 5.52e-01 -0.0346 0.0581 0.69 CD4T L1
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 7.19e-01 -0.0179 0.0497 0.69 CD4T L1
ENSG00000287510 AL137857.1 22901 sc-eQTL 3.67e-01 0.0537 0.0594 0.69 CD4T L1
ENSG00000060688 SNRNP40 -542194 sc-eQTL 5.58e-01 -0.0563 0.0959 0.69 CD8T L1
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 2.40e-01 -0.075 0.0637 0.69 CD8T L1
ENSG00000134644 PUM1 -311397 sc-eQTL 3.81e-01 0.0492 0.0562 0.69 CD8T L1
ENSG00000162511 LAPTM5 -3180 sc-eQTL 5.54e-01 -0.0324 0.0546 0.69 CD8T L1
ENSG00000162517 PEF1 -890302 sc-eQTL 3.82e-01 0.0588 0.0672 0.69 CD8T L1
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 1.46e-01 -0.0931 0.0637 0.69 CD8T L1
ENSG00000287510 AL137857.1 22901 sc-eQTL 8.33e-01 -0.017 0.0804 0.69 CD8T L1
ENSG00000060688 SNRNP40 -542194 sc-eQTL 8.95e-01 -0.0113 0.0853 0.689 DC L1
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 3.66e-01 -0.0914 0.101 0.689 DC L1
ENSG00000134644 PUM1 -311397 sc-eQTL 8.04e-01 0.0196 0.0791 0.689 DC L1
ENSG00000162511 LAPTM5 -3180 sc-eQTL 3.51e-02 0.118 0.0559 0.689 DC L1
ENSG00000162517 PEF1 -890302 sc-eQTL 7.91e-01 0.0243 0.0916 0.689 DC L1
ENSG00000168528 SERINC2 -654971 sc-eQTL 1.56e-01 0.132 0.0927 0.689 DC L1
ENSG00000284543 LINC01226 -751632 sc-eQTL 9.64e-01 -0.00281 0.0617 0.689 DC L1
ENSG00000287510 AL137857.1 22901 sc-eQTL 9.36e-01 0.00724 0.0893 0.689 DC L1
ENSG00000060688 SNRNP40 -542194 sc-eQTL 8.04e-01 0.0163 0.0655 0.69 Mono L1
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 3.93e-01 -0.0693 0.081 0.69 Mono L1
ENSG00000134644 PUM1 -311397 sc-eQTL 5.26e-01 -0.0331 0.052 0.69 Mono L1
ENSG00000162511 LAPTM5 -3180 sc-eQTL 4.16e-02 0.0972 0.0474 0.69 Mono L1
ENSG00000162512 SDC3 -154164 sc-eQTL 8.03e-02 -0.161 0.0913 0.69 Mono L1
ENSG00000162517 PEF1 -890302 sc-eQTL 7.01e-01 0.0248 0.0645 0.69 Mono L1
ENSG00000168528 SERINC2 -654971 sc-eQTL 9.78e-01 0.00272 0.0987 0.69 Mono L1
ENSG00000284543 LINC01226 -751632 sc-eQTL 8.98e-01 0.0112 0.087 0.69 Mono L1
ENSG00000287510 AL137857.1 22901 sc-eQTL 6.96e-01 0.0298 0.076 0.69 Mono L1
ENSG00000060688 SNRNP40 -542194 sc-eQTL 2.46e-01 -0.107 0.0919 0.689 NK L1
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 6.30e-01 -0.0304 0.0631 0.689 NK L1
ENSG00000134644 PUM1 -311397 sc-eQTL 7.60e-01 0.0203 0.0662 0.689 NK L1
ENSG00000162511 LAPTM5 -3180 sc-eQTL 5.28e-07 0.371 0.0718 0.689 NK L1
ENSG00000162517 PEF1 -890302 sc-eQTL 5.78e-01 0.031 0.0556 0.689 NK L1
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 1.83e-01 -0.114 0.0853 0.689 NK L1
ENSG00000287510 AL137857.1 22901 sc-eQTL 2.11e-02 0.181 0.0781 0.689 NK L1
ENSG00000060688 SNRNP40 -542194 sc-eQTL 5.51e-01 0.0417 0.0699 0.69 Other_T L1
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 9.16e-01 0.00792 0.0748 0.69 Other_T L1
ENSG00000134644 PUM1 -311397 sc-eQTL 2.41e-01 0.0787 0.067 0.69 Other_T L1
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.41e-01 -0.0811 0.0548 0.69 Other_T L1
ENSG00000162517 PEF1 -890302 sc-eQTL 5.73e-01 0.0415 0.0735 0.69 Other_T L1
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 3.35e-03 -0.262 0.0884 0.69 Other_T L1
ENSG00000287510 AL137857.1 22901 sc-eQTL 7.46e-01 -0.0304 0.094 0.69 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -542194 sc-eQTL 8.82e-01 0.016 0.108 0.681 B_Activated L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 2.42e-01 -0.127 0.109 0.681 B_Activated L2
ENSG00000134644 PUM1 -311397 sc-eQTL 1.67e-01 -0.14 0.101 0.681 B_Activated L2
ENSG00000162510 MATN1 31009 sc-eQTL 3.39e-01 0.0846 0.0882 0.681 B_Activated L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 2.32e-01 -0.0738 0.0615 0.681 B_Activated L2
ENSG00000162517 PEF1 -890302 sc-eQTL 5.80e-01 -0.0582 0.105 0.681 B_Activated L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 2.37e-02 -0.224 0.0982 0.681 B_Activated L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 5.02e-01 -0.0593 0.088 0.681 B_Activated L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 9.53e-01 -0.00609 0.102 0.691 B_Intermediate L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 7.62e-01 -0.0259 0.0853 0.691 B_Intermediate L2
ENSG00000134644 PUM1 -311397 sc-eQTL 3.82e-01 -0.0704 0.0803 0.691 B_Intermediate L2
ENSG00000162510 MATN1 31009 sc-eQTL 9.97e-02 -0.138 0.0832 0.691 B_Intermediate L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.03e-01 -0.0836 0.0511 0.691 B_Intermediate L2
ENSG00000162517 PEF1 -890302 sc-eQTL 7.81e-01 -0.0265 0.0954 0.691 B_Intermediate L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 2.64e-01 0.0805 0.0719 0.691 B_Intermediate L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 1.61e-01 -0.113 0.0803 0.691 B_Intermediate L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 1.93e-01 0.13 0.0995 0.692 B_Memory L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 8.68e-01 0.0153 0.0921 0.692 B_Memory L2
ENSG00000134644 PUM1 -311397 sc-eQTL 8.72e-01 -0.0129 0.0801 0.692 B_Memory L2
ENSG00000162510 MATN1 31009 sc-eQTL 9.28e-01 -0.0069 0.0767 0.692 B_Memory L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 2.97e-01 -0.0709 0.0678 0.692 B_Memory L2
ENSG00000162517 PEF1 -890302 sc-eQTL 3.69e-01 -0.0815 0.0906 0.692 B_Memory L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 7.15e-01 -0.0284 0.0777 0.692 B_Memory L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 3.34e-01 -0.088 0.0909 0.692 B_Memory L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 1.20e-01 0.141 0.0903 0.69 B_Naive1 L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.12e-01 -0.0643 0.0783 0.69 B_Naive1 L2
ENSG00000134644 PUM1 -311397 sc-eQTL 2.17e-01 0.0853 0.0689 0.69 B_Naive1 L2
ENSG00000162510 MATN1 31009 sc-eQTL 1.38e-01 -0.104 0.0698 0.69 B_Naive1 L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 8.61e-01 0.0082 0.0469 0.69 B_Naive1 L2
ENSG00000162517 PEF1 -890302 sc-eQTL 8.57e-01 0.0149 0.0826 0.69 B_Naive1 L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 1.51e-02 -0.149 0.0607 0.69 B_Naive1 L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 2.28e-01 -0.0917 0.0758 0.69 B_Naive1 L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 7.96e-01 -0.0249 0.0962 0.693 B_Naive2 L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 8.10e-01 -0.0191 0.0794 0.693 B_Naive2 L2
ENSG00000134644 PUM1 -311397 sc-eQTL 8.78e-01 -0.0119 0.0777 0.693 B_Naive2 L2
ENSG00000162510 MATN1 31009 sc-eQTL 7.34e-01 -0.0254 0.0746 0.693 B_Naive2 L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 2.21e-01 -0.0619 0.0505 0.693 B_Naive2 L2
ENSG00000162517 PEF1 -890302 sc-eQTL 6.90e-01 0.0368 0.0921 0.693 B_Naive2 L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 6.04e-02 -0.138 0.0731 0.693 B_Naive2 L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 6.49e-01 -0.0363 0.0796 0.693 B_Naive2 L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 1.14e-01 -0.151 0.0949 0.689 CD4_CTL L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.26e-01 0.0749 0.0938 0.689 CD4_CTL L2
ENSG00000134644 PUM1 -311397 sc-eQTL 9.42e-01 -0.00666 0.0921 0.689 CD4_CTL L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 7.94e-01 -0.0215 0.0821 0.689 CD4_CTL L2
ENSG00000162517 PEF1 -890302 sc-eQTL 7.62e-01 -0.0256 0.0842 0.689 CD4_CTL L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 6.92e-01 -0.0356 0.0898 0.689 CD4_CTL L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 9.73e-01 0.00272 0.0793 0.689 CD4_CTL L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 8.73e-01 0.0121 0.0755 0.69 CD4_Naive L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 6.17e-01 0.0336 0.0669 0.69 CD4_Naive L2
ENSG00000134644 PUM1 -311397 sc-eQTL 4.37e-01 0.0416 0.0534 0.69 CD4_Naive L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 3.61e-05 -0.232 0.055 0.69 CD4_Naive L2
ENSG00000162517 PEF1 -890302 sc-eQTL 1.09e-01 -0.101 0.0625 0.69 CD4_Naive L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 7.48e-01 -0.0187 0.0581 0.69 CD4_Naive L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 9.63e-01 0.00309 0.0668 0.69 CD4_Naive L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 6.69e-01 0.0409 0.0956 0.69 CD4_TCM L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 5.66e-01 0.0443 0.0771 0.69 CD4_TCM L2
ENSG00000134644 PUM1 -311397 sc-eQTL 4.33e-01 0.0535 0.0682 0.69 CD4_TCM L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 2.28e-01 -0.0682 0.0564 0.69 CD4_TCM L2
ENSG00000162517 PEF1 -890302 sc-eQTL 7.33e-01 0.0259 0.0759 0.69 CD4_TCM L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 8.49e-01 0.0137 0.0718 0.69 CD4_TCM L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 3.01e-01 0.0827 0.0798 0.69 CD4_TCM L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 3.21e-01 0.0945 0.095 0.69 CD4_TEM L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 2.11e-01 -0.113 0.0905 0.69 CD4_TEM L2
ENSG00000134644 PUM1 -311397 sc-eQTL 7.01e-01 -0.0291 0.0756 0.69 CD4_TEM L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.18e-01 -0.119 0.0761 0.69 CD4_TEM L2
ENSG00000162517 PEF1 -890302 sc-eQTL 1.14e-01 0.135 0.0852 0.69 CD4_TEM L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 9.64e-01 -0.00402 0.0895 0.69 CD4_TEM L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 3.11e-01 0.0893 0.088 0.69 CD4_TEM L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 5.17e-01 -0.068 0.105 0.69 CD8_CTL L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 5.61e-01 -0.0468 0.0803 0.69 CD8_CTL L2
ENSG00000134644 PUM1 -311397 sc-eQTL 8.84e-01 0.0114 0.0781 0.69 CD8_CTL L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 3.27e-01 0.0847 0.0863 0.69 CD8_CTL L2
ENSG00000162517 PEF1 -890302 sc-eQTL 3.14e-01 0.0758 0.0751 0.69 CD8_CTL L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 5.25e-01 -0.0578 0.0908 0.69 CD8_CTL L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 3.42e-01 0.0812 0.0853 0.69 CD8_CTL L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 3.50e-01 -0.0881 0.0942 0.69 CD8_Naive L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 2.53e-01 -0.093 0.0811 0.69 CD8_Naive L2
ENSG00000134644 PUM1 -311397 sc-eQTL 7.95e-01 -0.0171 0.0655 0.69 CD8_Naive L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 5.15e-04 -0.215 0.061 0.69 CD8_Naive L2
ENSG00000162517 PEF1 -890302 sc-eQTL 3.26e-01 -0.0856 0.087 0.69 CD8_Naive L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 3.07e-01 -0.08 0.0782 0.69 CD8_Naive L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 7.46e-01 -0.0277 0.0853 0.69 CD8_Naive L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 1.24e-01 -0.161 0.105 0.692 CD8_TCM L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 2.85e-01 -0.103 0.0961 0.692 CD8_TCM L2
ENSG00000134644 PUM1 -311397 sc-eQTL 5.93e-02 0.17 0.0898 0.692 CD8_TCM L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 2.65e-01 -0.106 0.0946 0.692 CD8_TCM L2
ENSG00000162517 PEF1 -890302 sc-eQTL 5.55e-01 0.0573 0.0969 0.692 CD8_TCM L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 7.32e-01 0.0301 0.0878 0.692 CD8_TCM L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 7.80e-01 0.0248 0.0888 0.692 CD8_TCM L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 8.14e-01 -0.0239 0.102 0.696 CD8_TEM L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 9.89e-01 0.00137 0.0974 0.696 CD8_TEM L2
ENSG00000134644 PUM1 -311397 sc-eQTL 2.23e-01 0.121 0.0992 0.696 CD8_TEM L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 7.31e-01 -0.0323 0.0936 0.696 CD8_TEM L2
ENSG00000162517 PEF1 -890302 sc-eQTL 1.50e-01 0.127 0.0877 0.696 CD8_TEM L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 9.24e-01 -0.00925 0.0972 0.696 CD8_TEM L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 7.08e-01 -0.0329 0.0879 0.696 CD8_TEM L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 5.66e-01 0.0584 0.101 0.69 MAIT L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 7.12e-01 -0.0332 0.0899 0.69 MAIT L2
ENSG00000134644 PUM1 -311397 sc-eQTL 1.88e-01 0.113 0.0858 0.69 MAIT L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 2.55e-02 -0.181 0.0803 0.69 MAIT L2
ENSG00000162517 PEF1 -890302 sc-eQTL 8.47e-01 0.0173 0.0893 0.69 MAIT L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 6.99e-03 -0.242 0.089 0.69 MAIT L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 4.11e-01 0.0768 0.0932 0.69 MAIT L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 9.30e-01 0.00889 0.101 0.691 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.97e-02 -0.167 0.0846 0.691 NK_CD56bright L2
ENSG00000134644 PUM1 -311397 sc-eQTL 6.29e-01 0.0434 0.0896 0.691 NK_CD56bright L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 9.49e-05 0.339 0.0852 0.691 NK_CD56bright L2
ENSG00000162517 PEF1 -890302 sc-eQTL 6.62e-01 -0.0376 0.0859 0.691 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 7.43e-01 -0.0292 0.0889 0.691 NK_CD56bright L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 3.90e-01 0.0753 0.0874 0.691 NK_CD56bright L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 7.75e-01 0.0278 0.0969 0.688 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 8.14e-01 0.0169 0.0717 0.688 NK_CD56dim L2
ENSG00000134644 PUM1 -311397 sc-eQTL 8.71e-01 0.0119 0.0736 0.688 NK_CD56dim L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.66e-05 0.331 0.075 0.688 NK_CD56dim L2
ENSG00000162517 PEF1 -890302 sc-eQTL 4.27e-01 -0.0554 0.0697 0.688 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 1.98e-01 -0.126 0.0979 0.688 NK_CD56dim L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 1.03e-01 0.132 0.0806 0.688 NK_CD56dim L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 9.34e-02 -0.177 0.105 0.689 NK_HLA L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 5.56e-01 -0.0557 0.0943 0.689 NK_HLA L2
ENSG00000134644 PUM1 -311397 sc-eQTL 2.00e-01 0.118 0.0916 0.689 NK_HLA L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.57e-04 0.326 0.0846 0.689 NK_HLA L2
ENSG00000162517 PEF1 -890302 sc-eQTL 4.50e-01 -0.0748 0.0988 0.689 NK_HLA L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 1.08e-01 0.15 0.0928 0.689 NK_HLA L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 7.65e-01 -0.027 0.0903 0.689 NK_HLA L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 3.42e-01 -0.0903 0.0949 0.688 NK_cytokine L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 6.75e-01 -0.0311 0.0742 0.688 NK_cytokine L2
ENSG00000134644 PUM1 -311397 sc-eQTL 8.03e-01 -0.0201 0.0802 0.688 NK_cytokine L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 7.58e-06 0.387 0.0842 0.688 NK_cytokine L2
ENSG00000162517 PEF1 -890302 sc-eQTL 5.69e-02 0.143 0.0746 0.688 NK_cytokine L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 6.34e-01 -0.0447 0.0936 0.688 NK_cytokine L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 8.86e-01 0.0125 0.0871 0.688 NK_cytokine L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 3.16e-01 -0.108 0.108 0.656 PB L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 8.06e-01 -0.0309 0.125 0.656 PB L2
ENSG00000134644 PUM1 -311397 sc-eQTL 4.26e-01 0.0868 0.109 0.656 PB L2
ENSG00000162510 MATN1 31009 sc-eQTL 8.12e-01 -0.0243 0.102 0.656 PB L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.84e-01 0.0963 0.072 0.656 PB L2
ENSG00000162517 PEF1 -890302 sc-eQTL 5.07e-01 -0.0742 0.112 0.656 PB L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 3.24e-01 -0.098 0.0989 0.656 PB L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 6.09e-01 0.0541 0.106 0.656 PB L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 4.92e-01 0.0511 0.0742 0.691 Pro_T L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 7.93e-01 0.0247 0.0943 0.691 Pro_T L2
ENSG00000134644 PUM1 -311397 sc-eQTL 5.41e-01 0.0539 0.0879 0.691 Pro_T L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 3.32e-01 0.0613 0.063 0.691 Pro_T L2
ENSG00000162517 PEF1 -890302 sc-eQTL 5.59e-01 -0.0542 0.0926 0.691 Pro_T L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 2.34e-01 0.105 0.0879 0.691 Pro_T L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 8.99e-01 0.0103 0.0811 0.691 Pro_T L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 1.66e-01 -0.135 0.0972 0.69 Treg L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 6.24e-01 0.0464 0.0945 0.69 Treg L2
ENSG00000134644 PUM1 -311397 sc-eQTL 5.41e-01 0.0463 0.0756 0.69 Treg L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 8.92e-01 -0.0118 0.0866 0.69 Treg L2
ENSG00000162517 PEF1 -890302 sc-eQTL 8.49e-01 0.0178 0.0935 0.69 Treg L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 7.24e-01 0.0312 0.0882 0.69 Treg L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 6.60e-01 0.0388 0.0881 0.69 Treg L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 6.31e-01 0.0476 0.099 0.693 cDC L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.41e-02 -0.215 0.106 0.693 cDC L2
ENSG00000134644 PUM1 -311397 sc-eQTL 4.05e-01 0.0767 0.092 0.693 cDC L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.52e-01 0.0925 0.0642 0.693 cDC L2
ENSG00000162517 PEF1 -890302 sc-eQTL 8.81e-01 0.0141 0.0935 0.693 cDC L2
ENSG00000168528 SERINC2 -654971 sc-eQTL 5.44e-01 0.0504 0.0828 0.693 cDC L2
ENSG00000284543 LINC01226 -751632 sc-eQTL 9.12e-01 -0.00905 0.0815 0.693 cDC L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 7.43e-01 0.0288 0.0877 0.693 cDC L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 4.03e-01 0.0659 0.0787 0.69 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.92e-01 -0.0605 0.0878 0.69 cMono_IL1B L2
ENSG00000134644 PUM1 -311397 sc-eQTL 7.26e-01 -0.0209 0.0595 0.69 cMono_IL1B L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.18e-01 0.0814 0.0519 0.69 cMono_IL1B L2
ENSG00000162512 SDC3 -154164 sc-eQTL 7.74e-01 -0.0283 0.0984 0.69 cMono_IL1B L2
ENSG00000162517 PEF1 -890302 sc-eQTL 4.84e-01 0.0563 0.0803 0.69 cMono_IL1B L2
ENSG00000168528 SERINC2 -654971 sc-eQTL 7.29e-01 -0.0346 0.0996 0.69 cMono_IL1B L2
ENSG00000284543 LINC01226 -751632 sc-eQTL 2.27e-01 0.106 0.0877 0.69 cMono_IL1B L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 6.93e-01 0.0324 0.0821 0.69 cMono_IL1B L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 2.85e-01 -0.0888 0.0828 0.69 cMono_S100A L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 7.35e-01 -0.0333 0.0981 0.69 cMono_S100A L2
ENSG00000134644 PUM1 -311397 sc-eQTL 4.58e-01 -0.0527 0.0708 0.69 cMono_S100A L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 5.15e-01 0.0355 0.0545 0.69 cMono_S100A L2
ENSG00000162512 SDC3 -154164 sc-eQTL 2.07e-01 -0.119 0.0938 0.69 cMono_S100A L2
ENSG00000162517 PEF1 -890302 sc-eQTL 5.77e-01 -0.0475 0.085 0.69 cMono_S100A L2
ENSG00000168528 SERINC2 -654971 sc-eQTL 5.92e-01 -0.0535 0.0997 0.69 cMono_S100A L2
ENSG00000284543 LINC01226 -751632 sc-eQTL 7.96e-01 -0.021 0.081 0.69 cMono_S100A L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 4.60e-01 0.0601 0.0812 0.69 cMono_S100A L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 6.14e-01 -0.061 0.121 0.688 gdT L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 6.01e-02 0.194 0.102 0.688 gdT L2
ENSG00000134644 PUM1 -311397 sc-eQTL 7.06e-01 -0.0404 0.107 0.688 gdT L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 6.05e-01 0.0601 0.116 0.688 gdT L2
ENSG00000162517 PEF1 -890302 sc-eQTL 4.20e-01 -0.0856 0.106 0.688 gdT L2
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 2.85e-01 -0.115 0.107 0.688 gdT L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 9.93e-01 -0.000858 0.104 0.688 gdT L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 4.81e-01 -0.0659 0.0934 0.691 intMono L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 6.09e-01 0.0515 0.1 0.691 intMono L2
ENSG00000134644 PUM1 -311397 sc-eQTL 1.55e-01 0.121 0.0849 0.691 intMono L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 6.50e-02 0.123 0.0663 0.691 intMono L2
ENSG00000162512 SDC3 -154164 sc-eQTL 2.16e-01 -0.113 0.0913 0.691 intMono L2
ENSG00000162517 PEF1 -890302 sc-eQTL 1.84e-01 0.128 0.0958 0.691 intMono L2
ENSG00000168528 SERINC2 -654971 sc-eQTL 6.86e-01 -0.0388 0.0959 0.691 intMono L2
ENSG00000284543 LINC01226 -751632 sc-eQTL 5.08e-01 -0.0601 0.0908 0.691 intMono L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 5.86e-01 0.0496 0.0908 0.691 intMono L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 5.21e-01 -0.0571 0.0888 0.688 ncMono L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.09e-01 -0.0783 0.0946 0.688 ncMono L2
ENSG00000134644 PUM1 -311397 sc-eQTL 3.90e-01 -0.0666 0.0773 0.688 ncMono L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 3.20e-01 0.07 0.0702 0.688 ncMono L2
ENSG00000162512 SDC3 -154164 sc-eQTL 7.10e-01 -0.0293 0.0788 0.688 ncMono L2
ENSG00000162517 PEF1 -890302 sc-eQTL 6.14e-01 -0.0456 0.0904 0.688 ncMono L2
ENSG00000168528 SERINC2 -654971 sc-eQTL 4.43e-01 0.0661 0.0859 0.688 ncMono L2
ENSG00000284543 LINC01226 -751632 sc-eQTL 3.61e-01 -0.0785 0.0858 0.688 ncMono L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 8.74e-01 0.0142 0.0891 0.688 ncMono L2
ENSG00000060688 SNRNP40 -542194 sc-eQTL 1.49e-01 -0.146 0.101 0.698 pDC L2
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 7.68e-01 -0.0328 0.111 0.698 pDC L2
ENSG00000134644 PUM1 -311397 sc-eQTL 1.39e-01 -0.136 0.0915 0.698 pDC L2
ENSG00000162511 LAPTM5 -3180 sc-eQTL 6.20e-02 0.159 0.0847 0.698 pDC L2
ENSG00000162517 PEF1 -890302 sc-eQTL 9.05e-01 -0.0132 0.111 0.698 pDC L2
ENSG00000168528 SERINC2 -654971 sc-eQTL 3.03e-01 0.107 0.103 0.698 pDC L2
ENSG00000284543 LINC01226 -751632 sc-eQTL 8.20e-01 -0.0183 0.0806 0.698 pDC L2
ENSG00000287510 AL137857.1 22901 sc-eQTL 6.51e-01 -0.043 0.0948 0.698 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -542194 sc-eQTL 9.29e-01 -0.00871 0.0971 0.69 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 9.15e-01 -0.00862 0.0809 0.69 B_Memory LOneK1K
ENSG00000134644 PUM1 -311397 sc-eQTL 2.39e-01 -0.0843 0.0714 0.69 B_Memory LOneK1K
ENSG00000162510 MATN1 31009 sc-eQTL 4.71e-01 -0.0589 0.0816 0.69 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -3180 sc-eQTL 1.51e-02 -0.124 0.0506 0.69 B_Memory LOneK1K
ENSG00000162517 PEF1 -890302 sc-eQTL 9.22e-01 0.00831 0.085 0.69 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 7.16e-01 -0.0248 0.0679 0.69 B_Memory LOneK1K
ENSG00000287510 AL137857.1 22901 sc-eQTL 2.54e-02 -0.165 0.0731 0.69 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -542194 sc-eQTL 2.34e-01 0.105 0.088 0.69 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.73e-01 -0.0501 0.0698 0.69 B_Naive LOneK1K
ENSG00000134644 PUM1 -311397 sc-eQTL 2.76e-01 0.0719 0.0659 0.69 B_Naive LOneK1K
ENSG00000162510 MATN1 31009 sc-eQTL 1.70e-01 -0.0871 0.0633 0.69 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -3180 sc-eQTL 8.84e-01 -0.00653 0.0448 0.69 B_Naive LOneK1K
ENSG00000162517 PEF1 -890302 sc-eQTL 9.24e-01 0.00778 0.0818 0.69 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 3.65e-03 -0.167 0.0567 0.69 B_Naive LOneK1K
ENSG00000287510 AL137857.1 22901 sc-eQTL 1.88e-01 -0.0903 0.0684 0.69 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -542194 sc-eQTL 8.07e-01 0.0184 0.0751 0.69 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 4.45e-01 -0.065 0.0849 0.69 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -311397 sc-eQTL 4.84e-01 -0.038 0.0542 0.69 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -3180 sc-eQTL 7.20e-02 0.0856 0.0473 0.69 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -154164 sc-eQTL 3.45e-01 -0.0918 0.0971 0.69 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -890302 sc-eQTL 9.22e-01 0.00668 0.0684 0.69 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -654971 sc-eQTL 7.16e-01 -0.0365 0.1 0.69 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -751632 sc-eQTL 4.07e-01 0.0681 0.0819 0.69 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 22901 sc-eQTL 5.07e-01 0.051 0.0768 0.69 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -542194 sc-eQTL 4.43e-01 -0.0633 0.0823 0.688 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 8.78e-01 -0.0139 0.0902 0.688 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -311397 sc-eQTL 8.99e-01 0.00937 0.0739 0.688 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -3180 sc-eQTL 7.66e-02 0.104 0.0587 0.688 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -154164 sc-eQTL 3.11e-01 -0.0876 0.0862 0.688 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -890302 sc-eQTL 3.04e-01 0.0807 0.0783 0.688 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -654971 sc-eQTL 6.94e-01 0.0353 0.0895 0.688 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -751632 sc-eQTL 2.89e-01 -0.0901 0.0848 0.688 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 22901 sc-eQTL 4.95e-01 0.0582 0.085 0.688 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -542194 sc-eQTL 2.57e-01 -0.105 0.0925 0.688 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -542388 sc-eQTL 7.81e-01 -0.0176 0.0634 0.688 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -311397 sc-eQTL 6.82e-01 0.0285 0.0694 0.688 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -3180 sc-eQTL 9.90e-07 0.369 0.0733 0.688 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -890302 sc-eQTL 4.35e-01 0.046 0.0589 0.688 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 36090 sc-eQTL 1.70e-01 -0.123 0.0891 0.688 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 22901 sc-eQTL 4.34e-02 0.155 0.0765 0.688 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -3180 eQTL 2.04e-32 0.12 0.00976 0.486 0.454 0.341
ENSG00000162512 SDC3 -154164 eQTL 0.000477 -0.0902 0.0257 0.00101 0.0 0.341
ENSG00000168528 SERINC2 -654971 eQTL 0.0393 -0.0836 0.0405 0.0 0.0 0.341
ENSG00000186056 MATN1-AS1 36090 eQTL 4.46e-02 -0.0266 0.0132 0.0 0.0 0.341

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -3180 0.000102 5.4e-05 8.75e-06 2.15e-05 8.19e-06 2.99e-05 6.49e-05 7.57e-06 5.4e-05 2.54e-05 7.21e-05 2.9e-05 7.69e-05 2.12e-05 9.38e-06 3.92e-05 2.74e-05 4.08e-05 1.12e-05 1.16e-05 2.52e-05 6.44e-05 4.96e-05 1.33e-05 7.14e-05 1.54e-05 2.53e-05 2.05e-05 4.7e-05 3.56e-05 3.45e-05 3.36e-06 5.71e-06 8.56e-06 1.69e-05 8.07e-06 4.42e-06 5.53e-06 7.12e-06 4.51e-06 2.04e-06 5.91e-05 6.76e-06 5.02e-07 5.01e-06 5.27e-06 6.85e-06 2.47e-06 2.23e-06