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Genes within 1Mb (chr1:30752875:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -543913 sc-eQTL 2.00e-01 0.104 0.0806 0.622 B L1
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 5.64e-01 -0.0374 0.0647 0.622 B L1
ENSG00000134644 PUM1 -313116 sc-eQTL 9.63e-01 0.00254 0.0544 0.622 B L1
ENSG00000162510 MATN1 29290 sc-eQTL 1.04e-01 -0.0927 0.0568 0.622 B L1
ENSG00000162511 LAPTM5 -4899 sc-eQTL 1.54e-01 0.0637 0.0445 0.622 B L1
ENSG00000162517 PEF1 -892021 sc-eQTL 6.13e-01 -0.0342 0.0675 0.622 B L1
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 1.91e-01 -0.0686 0.0522 0.622 B L1
ENSG00000287510 AL137857.1 21182 sc-eQTL 1.59e-01 -0.0873 0.0618 0.622 B L1
ENSG00000060688 SNRNP40 -543913 sc-eQTL 9.75e-01 0.00217 0.0696 0.622 CD4T L1
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 1.96e-01 0.0703 0.0541 0.622 CD4T L1
ENSG00000134644 PUM1 -313116 sc-eQTL 5.74e-01 0.0272 0.0484 0.622 CD4T L1
ENSG00000162511 LAPTM5 -4899 sc-eQTL 1.09e-02 -0.136 0.0528 0.622 CD4T L1
ENSG00000162517 PEF1 -892021 sc-eQTL 3.62e-01 -0.0512 0.056 0.622 CD4T L1
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 9.07e-01 0.00561 0.048 0.622 CD4T L1
ENSG00000287510 AL137857.1 21182 sc-eQTL 5.34e-01 0.0358 0.0574 0.622 CD4T L1
ENSG00000060688 SNRNP40 -543913 sc-eQTL 3.66e-01 -0.0837 0.0924 0.622 CD8T L1
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 4.27e-01 -0.049 0.0615 0.622 CD8T L1
ENSG00000134644 PUM1 -313116 sc-eQTL 5.65e-01 0.0312 0.0542 0.622 CD8T L1
ENSG00000162511 LAPTM5 -4899 sc-eQTL 6.57e-01 -0.0234 0.0526 0.622 CD8T L1
ENSG00000162517 PEF1 -892021 sc-eQTL 9.58e-01 0.00342 0.0649 0.622 CD8T L1
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 3.49e-01 -0.0578 0.0616 0.622 CD8T L1
ENSG00000287510 AL137857.1 21182 sc-eQTL 1.48e-01 -0.112 0.0772 0.622 CD8T L1
ENSG00000060688 SNRNP40 -543913 sc-eQTL 6.60e-01 0.0365 0.083 0.624 DC L1
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 5.72e-01 -0.0557 0.0983 0.624 DC L1
ENSG00000134644 PUM1 -313116 sc-eQTL 8.48e-01 -0.0148 0.077 0.624 DC L1
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.32e-01 0.0534 0.0549 0.624 DC L1
ENSG00000162517 PEF1 -892021 sc-eQTL 5.07e-01 0.0592 0.0891 0.624 DC L1
ENSG00000168528 SERINC2 -656690 sc-eQTL 2.60e-01 0.102 0.0904 0.624 DC L1
ENSG00000284543 LINC01226 -753351 sc-eQTL 6.98e-01 0.0234 0.0601 0.624 DC L1
ENSG00000287510 AL137857.1 21182 sc-eQTL 7.34e-01 0.0296 0.087 0.624 DC L1
ENSG00000060688 SNRNP40 -543913 sc-eQTL 9.55e-01 -0.00354 0.0632 0.622 Mono L1
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 2.09e-01 -0.0984 0.0781 0.622 Mono L1
ENSG00000134644 PUM1 -313116 sc-eQTL 7.07e-01 -0.0189 0.0502 0.622 Mono L1
ENSG00000162511 LAPTM5 -4899 sc-eQTL 4.47e-02 0.0924 0.0458 0.622 Mono L1
ENSG00000162512 SDC3 -155883 sc-eQTL 3.50e-01 -0.0831 0.0886 0.622 Mono L1
ENSG00000162517 PEF1 -892021 sc-eQTL 5.04e-01 0.0417 0.0622 0.622 Mono L1
ENSG00000168528 SERINC2 -656690 sc-eQTL 8.95e-01 0.0125 0.0953 0.622 Mono L1
ENSG00000284543 LINC01226 -753351 sc-eQTL 8.91e-01 0.0116 0.0839 0.622 Mono L1
ENSG00000287510 AL137857.1 21182 sc-eQTL 9.57e-01 0.00395 0.0734 0.622 Mono L1
ENSG00000060688 SNRNP40 -543913 sc-eQTL 8.91e-02 -0.15 0.0879 0.622 NK L1
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 4.32e-01 -0.0477 0.0605 0.622 NK L1
ENSG00000134644 PUM1 -313116 sc-eQTL 5.40e-01 0.039 0.0635 0.622 NK L1
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.79e-05 0.296 0.0703 0.622 NK L1
ENSG00000162517 PEF1 -892021 sc-eQTL 9.41e-01 -0.00393 0.0534 0.622 NK L1
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 2.45e-01 -0.0955 0.082 0.622 NK L1
ENSG00000287510 AL137857.1 21182 sc-eQTL 1.22e-01 0.117 0.0755 0.622 NK L1
ENSG00000060688 SNRNP40 -543913 sc-eQTL 8.74e-01 -0.0107 0.0677 0.622 Other_T L1
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 2.92e-01 0.0762 0.0722 0.622 Other_T L1
ENSG00000134644 PUM1 -313116 sc-eQTL 7.73e-01 0.0188 0.0651 0.622 Other_T L1
ENSG00000162511 LAPTM5 -4899 sc-eQTL 1.06e-01 -0.0861 0.053 0.622 Other_T L1
ENSG00000162517 PEF1 -892021 sc-eQTL 8.78e-01 -0.0109 0.0712 0.622 Other_T L1
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 1.64e-03 -0.272 0.0853 0.622 Other_T L1
ENSG00000287510 AL137857.1 21182 sc-eQTL 5.70e-01 -0.0517 0.0909 0.622 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -543913 sc-eQTL 9.59e-01 0.00551 0.107 0.61 B_Activated L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 4.33e-01 -0.0846 0.108 0.61 B_Activated L2
ENSG00000134644 PUM1 -313116 sc-eQTL 2.58e-01 -0.113 0.1 0.61 B_Activated L2
ENSG00000162510 MATN1 29290 sc-eQTL 6.91e-01 0.0349 0.0877 0.61 B_Activated L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 9.46e-01 0.00416 0.0612 0.61 B_Activated L2
ENSG00000162517 PEF1 -892021 sc-eQTL 1.86e-01 -0.137 0.104 0.61 B_Activated L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 2.79e-02 -0.216 0.0974 0.61 B_Activated L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 2.24e-01 -0.106 0.087 0.61 B_Activated L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 5.66e-01 -0.057 0.0991 0.622 B_Intermediate L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 8.12e-01 -0.0197 0.0826 0.622 B_Intermediate L2
ENSG00000134644 PUM1 -313116 sc-eQTL 7.15e-01 -0.0285 0.0779 0.622 B_Intermediate L2
ENSG00000162510 MATN1 29290 sc-eQTL 3.18e-02 -0.173 0.0803 0.622 B_Intermediate L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 2.72e-01 -0.0547 0.0497 0.622 B_Intermediate L2
ENSG00000162517 PEF1 -892021 sc-eQTL 5.98e-01 -0.0488 0.0924 0.622 B_Intermediate L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 4.95e-02 0.137 0.0693 0.622 B_Intermediate L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 6.44e-01 -0.0362 0.0782 0.622 B_Intermediate L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 2.63e-01 0.111 0.0984 0.623 B_Memory L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 9.03e-01 0.0111 0.0909 0.623 B_Memory L2
ENSG00000134644 PUM1 -313116 sc-eQTL 2.92e-01 -0.0834 0.079 0.623 B_Memory L2
ENSG00000162510 MATN1 29290 sc-eQTL 5.20e-01 0.0487 0.0757 0.623 B_Memory L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.74e-01 0.0597 0.067 0.623 B_Memory L2
ENSG00000162517 PEF1 -892021 sc-eQTL 1.93e-01 -0.117 0.0893 0.623 B_Memory L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 7.44e-01 -0.0251 0.0768 0.623 B_Memory L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 6.01e-01 -0.0472 0.0899 0.623 B_Memory L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 6.59e-02 0.161 0.0874 0.622 B_Naive1 L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 7.49e-01 -0.0244 0.076 0.622 B_Naive1 L2
ENSG00000134644 PUM1 -313116 sc-eQTL 5.64e-01 0.0388 0.067 0.622 B_Naive1 L2
ENSG00000162510 MATN1 29290 sc-eQTL 3.07e-01 -0.0696 0.0679 0.622 B_Naive1 L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.69e-01 0.0409 0.0454 0.622 B_Naive1 L2
ENSG00000162517 PEF1 -892021 sc-eQTL 9.65e-01 -0.00353 0.0801 0.622 B_Naive1 L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 1.10e-01 -0.0954 0.0593 0.622 B_Naive1 L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 1.09e-01 -0.118 0.0733 0.622 B_Naive1 L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 6.03e-01 0.0492 0.0946 0.624 B_Naive2 L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 7.22e-01 0.0279 0.0781 0.624 B_Naive2 L2
ENSG00000134644 PUM1 -313116 sc-eQTL 9.42e-01 -0.00559 0.0765 0.624 B_Naive2 L2
ENSG00000162510 MATN1 29290 sc-eQTL 3.47e-01 -0.0691 0.0733 0.624 B_Naive2 L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.28e-01 -0.0487 0.0497 0.624 B_Naive2 L2
ENSG00000162517 PEF1 -892021 sc-eQTL 6.04e-01 0.0471 0.0906 0.624 B_Naive2 L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 4.32e-02 -0.146 0.0719 0.624 B_Naive2 L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 3.39e-01 -0.075 0.0782 0.624 B_Naive2 L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 1.02e-01 -0.151 0.0919 0.623 CD4_CTL L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 2.27e-01 0.11 0.0906 0.623 CD4_CTL L2
ENSG00000134644 PUM1 -313116 sc-eQTL 6.50e-01 -0.0405 0.0892 0.623 CD4_CTL L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 7.85e-01 0.0217 0.0795 0.623 CD4_CTL L2
ENSG00000162517 PEF1 -892021 sc-eQTL 9.82e-01 0.0018 0.0815 0.623 CD4_CTL L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 9.04e-01 0.0105 0.087 0.623 CD4_CTL L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 7.63e-01 -0.0232 0.0767 0.623 CD4_CTL L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 9.31e-01 0.0063 0.0731 0.622 CD4_Naive L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 3.16e-01 0.065 0.0646 0.622 CD4_Naive L2
ENSG00000134644 PUM1 -313116 sc-eQTL 9.69e-01 -0.002 0.0517 0.622 CD4_Naive L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 7.27e-04 -0.185 0.0539 0.622 CD4_Naive L2
ENSG00000162517 PEF1 -892021 sc-eQTL 1.85e-01 -0.0804 0.0605 0.622 CD4_Naive L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 8.67e-01 -0.00942 0.0562 0.622 CD4_Naive L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 9.01e-01 -0.00801 0.0646 0.622 CD4_Naive L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 4.79e-01 0.0651 0.0919 0.622 CD4_TCM L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 2.22e-01 0.0905 0.0739 0.622 CD4_TCM L2
ENSG00000134644 PUM1 -313116 sc-eQTL 8.06e-01 0.0161 0.0656 0.622 CD4_TCM L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 5.14e-01 -0.0355 0.0544 0.622 CD4_TCM L2
ENSG00000162517 PEF1 -892021 sc-eQTL 6.03e-01 -0.038 0.0729 0.622 CD4_TCM L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 6.11e-01 0.0352 0.0691 0.622 CD4_TCM L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 4.07e-01 0.0639 0.0768 0.622 CD4_TCM L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 4.66e-01 0.0663 0.0908 0.622 CD4_TEM L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 4.21e-01 -0.0698 0.0865 0.622 CD4_TEM L2
ENSG00000134644 PUM1 -313116 sc-eQTL 1.87e-01 -0.0951 0.0719 0.622 CD4_TEM L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.60e-01 -0.0668 0.0728 0.622 CD4_TEM L2
ENSG00000162517 PEF1 -892021 sc-eQTL 8.11e-02 0.142 0.0812 0.622 CD4_TEM L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 8.55e-01 0.0156 0.0854 0.622 CD4_TEM L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 3.56e-01 0.0776 0.084 0.622 CD4_TEM L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 5.82e-01 -0.0554 0.1 0.622 CD8_CTL L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 9.75e-01 -0.0024 0.0771 0.622 CD8_CTL L2
ENSG00000134644 PUM1 -313116 sc-eQTL 9.87e-01 0.00127 0.0749 0.622 CD8_CTL L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.68e-01 0.0746 0.0828 0.622 CD8_CTL L2
ENSG00000162517 PEF1 -892021 sc-eQTL 6.29e-01 0.0349 0.0722 0.622 CD8_CTL L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 9.96e-01 -0.000435 0.0872 0.622 CD8_CTL L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 7.44e-01 -0.0268 0.082 0.622 CD8_CTL L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 4.14e-01 -0.074 0.0905 0.622 CD8_Naive L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 4.46e-01 -0.0595 0.078 0.622 CD8_Naive L2
ENSG00000134644 PUM1 -313116 sc-eQTL 9.10e-01 0.00709 0.0629 0.622 CD8_Naive L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.37e-03 -0.175 0.059 0.622 CD8_Naive L2
ENSG00000162517 PEF1 -892021 sc-eQTL 2.30e-01 -0.101 0.0835 0.622 CD8_Naive L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 3.87e-01 -0.0651 0.0751 0.622 CD8_Naive L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 1.68e-01 -0.113 0.0815 0.622 CD8_Naive L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 7.72e-02 -0.179 0.1 0.625 CD8_TCM L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 2.07e-01 -0.117 0.0925 0.625 CD8_TCM L2
ENSG00000134644 PUM1 -313116 sc-eQTL 2.28e-02 0.198 0.0861 0.625 CD8_TCM L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 2.19e-01 -0.112 0.091 0.625 CD8_TCM L2
ENSG00000162517 PEF1 -892021 sc-eQTL 7.39e-01 0.0312 0.0934 0.625 CD8_TCM L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 2.20e-01 0.104 0.0843 0.625 CD8_TCM L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 3.26e-01 0.084 0.0853 0.625 CD8_TCM L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 8.17e-01 -0.023 0.0993 0.628 CD8_TEM L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 5.27e-01 -0.0603 0.0951 0.628 CD8_TEM L2
ENSG00000134644 PUM1 -313116 sc-eQTL 6.27e-01 0.0474 0.0973 0.628 CD8_TEM L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 4.46e-01 -0.0699 0.0914 0.628 CD8_TEM L2
ENSG00000162517 PEF1 -892021 sc-eQTL 1.71e-01 0.118 0.0858 0.628 CD8_TEM L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 8.92e-01 0.0129 0.095 0.628 CD8_TEM L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 6.66e-01 -0.0372 0.0859 0.628 CD8_TEM L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 6.80e-01 -0.0406 0.0984 0.621 MAIT L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 5.51e-01 -0.0521 0.0871 0.621 MAIT L2
ENSG00000134644 PUM1 -313116 sc-eQTL 2.86e-01 0.0892 0.0834 0.621 MAIT L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 1.89e-02 -0.184 0.0778 0.621 MAIT L2
ENSG00000162517 PEF1 -892021 sc-eQTL 6.05e-01 -0.0449 0.0866 0.621 MAIT L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 2.53e-03 -0.263 0.0859 0.621 MAIT L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 3.91e-01 0.0777 0.0904 0.621 MAIT L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 8.99e-01 0.0125 0.0991 0.624 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 2.04e-02 -0.193 0.0826 0.624 NK_CD56bright L2
ENSG00000134644 PUM1 -313116 sc-eQTL 8.70e-01 0.0145 0.0879 0.624 NK_CD56bright L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 5.89e-04 0.294 0.0842 0.624 NK_CD56bright L2
ENSG00000162517 PEF1 -892021 sc-eQTL 8.72e-01 -0.0136 0.0843 0.624 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 6.84e-01 -0.0356 0.0871 0.624 NK_CD56bright L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 9.90e-01 -0.00105 0.0859 0.624 NK_CD56bright L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 9.34e-01 0.00781 0.0937 0.621 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 8.20e-01 0.0158 0.0693 0.621 NK_CD56dim L2
ENSG00000134644 PUM1 -313116 sc-eQTL 6.07e-01 0.0366 0.0711 0.621 NK_CD56dim L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.50e-04 0.267 0.0735 0.621 NK_CD56dim L2
ENSG00000162517 PEF1 -892021 sc-eQTL 2.54e-01 -0.077 0.0673 0.621 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 3.56e-01 -0.0877 0.0948 0.621 NK_CD56dim L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 4.64e-01 0.0575 0.0783 0.621 NK_CD56dim L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 4.45e-02 -0.204 0.101 0.621 NK_HLA L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 2.46e-01 -0.106 0.0908 0.621 NK_HLA L2
ENSG00000134644 PUM1 -313116 sc-eQTL 1.98e-01 0.114 0.0884 0.621 NK_HLA L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 1.12e-02 0.214 0.0833 0.621 NK_HLA L2
ENSG00000162517 PEF1 -892021 sc-eQTL 4.67e-01 -0.0695 0.0953 0.621 NK_HLA L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 5.96e-02 0.169 0.0893 0.621 NK_HLA L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 2.54e-01 -0.0994 0.0869 0.621 NK_HLA L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 1.69e-01 -0.126 0.0916 0.621 NK_cytokine L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 5.75e-01 -0.0403 0.0717 0.621 NK_cytokine L2
ENSG00000134644 PUM1 -313116 sc-eQTL 7.09e-01 -0.029 0.0776 0.621 NK_cytokine L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.50e-04 0.301 0.0829 0.621 NK_cytokine L2
ENSG00000162517 PEF1 -892021 sc-eQTL 1.81e-01 0.0972 0.0725 0.621 NK_cytokine L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 3.22e-01 -0.0897 0.0904 0.621 NK_cytokine L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 6.66e-01 0.0364 0.0842 0.621 NK_cytokine L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 5.15e-01 -0.0702 0.108 0.585 PB L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 8.45e-01 -0.0246 0.125 0.585 PB L2
ENSG00000134644 PUM1 -313116 sc-eQTL 5.48e-01 0.0653 0.108 0.585 PB L2
ENSG00000162510 MATN1 29290 sc-eQTL 3.52e-01 0.0943 0.101 0.585 PB L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 4.25e-02 0.146 0.071 0.585 PB L2
ENSG00000162517 PEF1 -892021 sc-eQTL 9.25e-01 0.0105 0.111 0.585 PB L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 6.22e-01 -0.0489 0.0989 0.585 PB L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 8.63e-01 0.0182 0.105 0.585 PB L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 3.18e-01 0.071 0.071 0.626 Pro_T L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 3.99e-01 0.0761 0.0901 0.626 Pro_T L2
ENSG00000134644 PUM1 -313116 sc-eQTL 2.34e-01 -0.1 0.0839 0.626 Pro_T L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 1.53e-01 0.0861 0.0601 0.626 Pro_T L2
ENSG00000162517 PEF1 -892021 sc-eQTL 7.91e-01 -0.0236 0.0886 0.626 Pro_T L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 1.82e-01 0.112 0.0841 0.626 Pro_T L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 8.78e-01 -0.0119 0.0776 0.626 Pro_T L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 2.68e-01 -0.104 0.094 0.622 Treg L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 9.52e-01 -0.00553 0.0912 0.622 Treg L2
ENSG00000134644 PUM1 -313116 sc-eQTL 3.17e-01 0.0731 0.0728 0.622 Treg L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 6.76e-01 0.0349 0.0835 0.622 Treg L2
ENSG00000162517 PEF1 -892021 sc-eQTL 3.24e-01 0.089 0.0901 0.622 Treg L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 5.78e-01 0.0473 0.0851 0.622 Treg L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 8.97e-01 -0.011 0.085 0.622 Treg L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 5.76e-01 0.0544 0.0972 0.624 cDC L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 5.11e-01 -0.0693 0.105 0.624 cDC L2
ENSG00000134644 PUM1 -313116 sc-eQTL 4.01e-01 0.0761 0.0903 0.624 cDC L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.56e-01 0.0586 0.0633 0.624 cDC L2
ENSG00000162517 PEF1 -892021 sc-eQTL 8.60e-01 -0.0162 0.0918 0.624 cDC L2
ENSG00000168528 SERINC2 -656690 sc-eQTL 6.36e-01 0.0386 0.0814 0.624 cDC L2
ENSG00000284543 LINC01226 -753351 sc-eQTL 8.15e-01 0.0187 0.08 0.624 cDC L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 2.97e-01 0.0897 0.0859 0.624 cDC L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 5.57e-01 0.0449 0.0764 0.622 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 5.56e-01 -0.0502 0.0852 0.622 cMono_IL1B L2
ENSG00000134644 PUM1 -313116 sc-eQTL 6.16e-01 -0.029 0.0577 0.622 cMono_IL1B L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 1.44e-01 0.0739 0.0504 0.622 cMono_IL1B L2
ENSG00000162512 SDC3 -155883 sc-eQTL 6.98e-01 0.0371 0.0954 0.622 cMono_IL1B L2
ENSG00000162517 PEF1 -892021 sc-eQTL 2.54e-01 0.0889 0.0777 0.622 cMono_IL1B L2
ENSG00000168528 SERINC2 -656690 sc-eQTL 6.33e-01 -0.0461 0.0966 0.622 cMono_IL1B L2
ENSG00000284543 LINC01226 -753351 sc-eQTL 2.46e-01 0.0991 0.0851 0.622 cMono_IL1B L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 7.96e-01 -0.0206 0.0797 0.622 cMono_IL1B L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 1.96e-01 -0.104 0.0801 0.622 cMono_S100A L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 6.16e-01 -0.0477 0.0949 0.622 cMono_S100A L2
ENSG00000134644 PUM1 -313116 sc-eQTL 8.06e-01 -0.0169 0.0686 0.622 cMono_S100A L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.06e-01 0.054 0.0526 0.622 cMono_S100A L2
ENSG00000162512 SDC3 -155883 sc-eQTL 6.08e-01 -0.0467 0.0911 0.622 cMono_S100A L2
ENSG00000162517 PEF1 -892021 sc-eQTL 6.10e-01 -0.042 0.0822 0.622 cMono_S100A L2
ENSG00000168528 SERINC2 -656690 sc-eQTL 8.31e-01 -0.0207 0.0965 0.622 cMono_S100A L2
ENSG00000284543 LINC01226 -753351 sc-eQTL 7.12e-01 -0.0289 0.0783 0.622 cMono_S100A L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 8.12e-01 0.0187 0.0787 0.622 cMono_S100A L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 1.83e-01 -0.154 0.115 0.627 gdT L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 1.86e-02 0.232 0.0973 0.627 gdT L2
ENSG00000134644 PUM1 -313116 sc-eQTL 3.39e-01 -0.0979 0.102 0.627 gdT L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 5.71e-01 0.0631 0.111 0.627 gdT L2
ENSG00000162517 PEF1 -892021 sc-eQTL 7.38e-01 -0.034 0.102 0.627 gdT L2
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 3.45e-01 -0.0969 0.102 0.627 gdT L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 8.99e-01 0.0126 0.0994 0.627 gdT L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 3.18e-01 -0.0902 0.0902 0.622 intMono L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 6.45e-01 -0.0448 0.0971 0.622 intMono L2
ENSG00000134644 PUM1 -313116 sc-eQTL 1.03e-01 0.134 0.0819 0.622 intMono L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 3.78e-01 0.0571 0.0645 0.622 intMono L2
ENSG00000162512 SDC3 -155883 sc-eQTL 5.54e-01 -0.0524 0.0885 0.622 intMono L2
ENSG00000162517 PEF1 -892021 sc-eQTL 7.34e-01 0.0317 0.093 0.622 intMono L2
ENSG00000168528 SERINC2 -656690 sc-eQTL 9.52e-01 -0.00555 0.0927 0.622 intMono L2
ENSG00000284543 LINC01226 -753351 sc-eQTL 1.97e-01 -0.113 0.0875 0.622 intMono L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 4.49e-01 0.0666 0.0877 0.622 intMono L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 4.76e-01 -0.061 0.0854 0.622 ncMono L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 6.06e-01 -0.047 0.0911 0.622 ncMono L2
ENSG00000134644 PUM1 -313116 sc-eQTL 2.47e-01 -0.0863 0.0742 0.622 ncMono L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 2.47e-01 0.0783 0.0674 0.622 ncMono L2
ENSG00000162512 SDC3 -155883 sc-eQTL 6.53e-01 -0.0342 0.0758 0.622 ncMono L2
ENSG00000162517 PEF1 -892021 sc-eQTL 5.68e-01 0.0498 0.0869 0.622 ncMono L2
ENSG00000168528 SERINC2 -656690 sc-eQTL 2.09e-01 0.104 0.0825 0.622 ncMono L2
ENSG00000284543 LINC01226 -753351 sc-eQTL 6.47e-01 -0.0379 0.0827 0.622 ncMono L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 7.99e-01 0.0218 0.0857 0.622 ncMono L2
ENSG00000060688 SNRNP40 -543913 sc-eQTL 3.04e-01 -0.101 0.098 0.633 pDC L2
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 4.86e-01 -0.0752 0.108 0.633 pDC L2
ENSG00000134644 PUM1 -313116 sc-eQTL 1.99e-02 -0.207 0.0879 0.633 pDC L2
ENSG00000162511 LAPTM5 -4899 sc-eQTL 4.39e-01 0.0644 0.0831 0.633 pDC L2
ENSG00000162517 PEF1 -892021 sc-eQTL 7.18e-01 0.039 0.108 0.633 pDC L2
ENSG00000168528 SERINC2 -656690 sc-eQTL 5.89e-01 0.0546 0.101 0.633 pDC L2
ENSG00000284543 LINC01226 -753351 sc-eQTL 7.89e-01 0.0209 0.0783 0.633 pDC L2
ENSG00000287510 AL137857.1 21182 sc-eQTL 6.72e-01 -0.039 0.0921 0.633 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -543913 sc-eQTL 6.88e-01 -0.0381 0.0947 0.622 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 9.85e-01 0.00145 0.0788 0.622 B_Memory LOneK1K
ENSG00000134644 PUM1 -313116 sc-eQTL 1.45e-01 -0.102 0.0695 0.622 B_Memory LOneK1K
ENSG00000162510 MATN1 29290 sc-eQTL 4.42e-01 -0.0613 0.0795 0.622 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -4899 sc-eQTL 4.41e-01 -0.0386 0.05 0.622 B_Memory LOneK1K
ENSG00000162517 PEF1 -892021 sc-eQTL 5.48e-01 -0.0498 0.0828 0.622 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 5.36e-01 0.041 0.0661 0.622 B_Memory LOneK1K
ENSG00000287510 AL137857.1 21182 sc-eQTL 2.50e-01 -0.083 0.0719 0.622 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -543913 sc-eQTL 8.87e-02 0.146 0.0855 0.622 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 9.90e-01 0.000876 0.068 0.622 B_Naive LOneK1K
ENSG00000134644 PUM1 -313116 sc-eQTL 8.31e-01 0.0137 0.0644 0.622 B_Naive LOneK1K
ENSG00000162510 MATN1 29290 sc-eQTL 2.93e-01 -0.0652 0.0618 0.622 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -4899 sc-eQTL 7.15e-01 0.016 0.0436 0.622 B_Naive LOneK1K
ENSG00000162517 PEF1 -892021 sc-eQTL 9.62e-01 -0.00379 0.0797 0.622 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 6.29e-02 -0.105 0.0559 0.622 B_Naive LOneK1K
ENSG00000287510 AL137857.1 21182 sc-eQTL 6.84e-02 -0.122 0.0664 0.622 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -543913 sc-eQTL 8.72e-01 -0.0118 0.0729 0.622 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 3.36e-01 -0.0795 0.0824 0.622 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -313116 sc-eQTL 5.59e-01 -0.0308 0.0527 0.622 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -4899 sc-eQTL 8.78e-02 0.0789 0.046 0.622 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -155883 sc-eQTL 9.87e-01 0.00159 0.0945 0.622 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -892021 sc-eQTL 6.64e-01 0.0289 0.0664 0.622 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -656690 sc-eQTL 7.34e-01 -0.0331 0.0972 0.622 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -753351 sc-eQTL 4.50e-01 0.0602 0.0796 0.622 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 21182 sc-eQTL 9.99e-01 -0.000139 0.0746 0.622 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -543913 sc-eQTL 3.36e-01 -0.0767 0.0795 0.621 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 6.78e-01 -0.0362 0.0872 0.621 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -313116 sc-eQTL 5.50e-01 0.0428 0.0714 0.621 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -4899 sc-eQTL 1.78e-01 0.077 0.0569 0.621 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -155883 sc-eQTL 4.96e-01 -0.0569 0.0834 0.621 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -892021 sc-eQTL 1.76e-01 0.103 0.0755 0.621 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -656690 sc-eQTL 4.08e-01 0.0716 0.0864 0.621 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -753351 sc-eQTL 1.80e-01 -0.11 0.0818 0.621 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 21182 sc-eQTL 5.52e-01 0.0489 0.0822 0.621 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -543913 sc-eQTL 5.99e-02 -0.167 0.0884 0.621 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -544107 sc-eQTL 5.09e-01 -0.0403 0.0609 0.621 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -313116 sc-eQTL 4.49e-01 0.0506 0.0667 0.621 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -4899 sc-eQTL 7.75e-05 0.29 0.0719 0.621 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -892021 sc-eQTL 8.99e-01 -0.00723 0.0567 0.621 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 34371 sc-eQTL 2.39e-01 -0.101 0.0858 0.621 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 21182 sc-eQTL 1.22e-01 0.115 0.0738 0.621 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -4899 eQTL 1.88e-11 0.0699 0.0103 0.0 0.0 0.414
ENSG00000162512 SDC3 -155883 eQTL 0.0271 -0.0573 0.0259 0.0 0.0 0.414

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 \N -544107 1.31e-06 1.53e-07 5.93e-08 2.41e-07 9.01e-08 1.71e-07 2.63e-07 5.48e-08 1.45e-07 7.6e-08 1.73e-07 1.01e-07 1.95e-07 8.55e-08 5.82e-08 7.89e-08 4.31e-08 1.77e-07 7.29e-08 4.78e-08 1.39e-07 1.26e-07 1.68e-07 3.4e-08 1.65e-07 1.23e-07 1.22e-07 9.65e-08 1.32e-07 9.49e-08 1.06e-07 3.87e-08 3.56e-08 1.23e-07 1.67e-07 3.6e-08 5.05e-08 8.63e-08 5.78e-08 3.67e-08 3.89e-08 1.63e-07 5.51e-08 2.4e-08 1.27e-07 1.87e-08 1.2e-07 1.88e-09 4.9e-08
ENSG00000162511 LAPTM5 -4899 0.000162 4.74e-05 4.42e-06 1.75e-05 5.94e-06 3.52e-05 5.58e-05 6.03e-06 4.45e-05 1.92e-05 4.97e-05 2.08e-05 7.22e-05 1.78e-05 8.15e-06 3.33e-05 2.74e-05 4.53e-05 9.37e-06 7.61e-06 1.97e-05 5.19e-05 4.81e-05 1.18e-05 6.38e-05 1.02e-05 2.07e-05 1.64e-05 3.6e-05 2.88e-05 2.32e-05 1.61e-06 3.37e-06 8.1e-06 1.27e-05 5.22e-06 2.85e-06 2.82e-06 6.16e-06 3.95e-06 1.78e-06 6.29e-05 1.1e-05 1.35e-07 3.27e-06 3.72e-06 4.58e-06 1.5e-06 1.59e-06