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Genes within 1Mb (chr1:30749911:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -546877 sc-eQTL 5.42e-01 0.128 0.21 0.05 CD4_CTL L2
ENSG00000121766 ZCCHC17 -547071 sc-eQTL 7.04e-01 0.0785 0.206 0.05 CD4_CTL L2
ENSG00000134644 PUM1 -316080 sc-eQTL 7.19e-01 -0.0729 0.202 0.05 CD4_CTL L2
ENSG00000162511 LAPTM5 -7863 sc-eQTL 9.65e-01 -0.00787 0.181 0.05 CD4_CTL L2
ENSG00000162517 PEF1 -894985 sc-eQTL 5.23e-01 0.118 0.185 0.05 CD4_CTL L2
ENSG00000186056 MATN1-AS1 31407 sc-eQTL 7.98e-01 0.0506 0.197 0.05 CD4_CTL L2
ENSG00000287510 AL137857.1 18218 sc-eQTL 7.31e-01 0.0599 0.174 0.05 CD4_CTL L2
ENSG00000060688 SNRNP40 -546877 sc-eQTL 1.79e-01 -0.314 0.232 0.052 PB L2
ENSG00000121766 ZCCHC17 -547071 sc-eQTL 8.66e-01 -0.0459 0.272 0.052 PB L2
ENSG00000134644 PUM1 -316080 sc-eQTL 1.74e-01 0.32 0.234 0.052 PB L2
ENSG00000162510 MATN1 26326 sc-eQTL 2.52e-01 -0.252 0.219 0.052 PB L2
ENSG00000162511 LAPTM5 -7863 sc-eQTL 9.77e-01 0.00454 0.157 0.052 PB L2
ENSG00000162517 PEF1 -894985 sc-eQTL 7.52e-01 -0.0765 0.242 0.052 PB L2
ENSG00000186056 MATN1-AS1 31407 sc-eQTL 2.91e-01 -0.227 0.214 0.052 PB L2
ENSG00000287510 AL137857.1 18218 sc-eQTL 4.37e-01 -0.178 0.228 0.052 PB L2
ENSG00000060688 SNRNP40 -546877 sc-eQTL 8.83e-01 -0.0301 0.205 0.054 cDC L2
ENSG00000121766 ZCCHC17 -547071 sc-eQTL 1.20e-01 -0.344 0.22 0.054 cDC L2
ENSG00000134644 PUM1 -316080 sc-eQTL 6.05e-01 -0.0988 0.19 0.054 cDC L2
ENSG00000162511 LAPTM5 -7863 sc-eQTL 9.49e-01 0.00853 0.134 0.054 cDC L2
ENSG00000162517 PEF1 -894985 sc-eQTL 6.28e-01 0.0938 0.193 0.054 cDC L2
ENSG00000168528 SERINC2 -659654 sc-eQTL 2.63e-01 0.192 0.171 0.054 cDC L2
ENSG00000284543 LINC01226 -756315 sc-eQTL 8.23e-01 -0.0378 0.168 0.054 cDC L2
ENSG00000287510 AL137857.1 18218 sc-eQTL 6.19e-01 0.0902 0.181 0.054 cDC L2
ENSG00000060688 SNRNP40 -546877 sc-eQTL 1.40e-01 0.317 0.214 0.051 pDC L2
ENSG00000121766 ZCCHC17 -547071 sc-eQTL 3.73e-01 -0.211 0.236 0.051 pDC L2
ENSG00000134644 PUM1 -316080 sc-eQTL 5.47e-01 0.118 0.196 0.051 pDC L2
ENSG00000162511 LAPTM5 -7863 sc-eQTL 6.29e-01 -0.0881 0.182 0.051 pDC L2
ENSG00000162517 PEF1 -894985 sc-eQTL 9.06e-02 0.399 0.234 0.051 pDC L2
ENSG00000168528 SERINC2 -659654 sc-eQTL 7.45e-01 -0.0721 0.221 0.051 pDC L2
ENSG00000284543 LINC01226 -756315 sc-eQTL 3.64e-01 -0.156 0.171 0.051 pDC L2
ENSG00000287510 AL137857.1 18218 sc-eQTL 9.44e-01 0.0142 0.202 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162512 SDC3 -158847 eQTL 0.00722 -0.191 0.0709 0.00314 0.0 0.0324

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162512 SDC3 -158847 5.12e-05 4.33e-06 4.65e-07 3.69e-06 8.63e-07 4.35e-06 3.33e-06 4.02e-07 2.51e-06 1.65e-06 3.32e-06 1.45e-06 7.03e-06 1.49e-06 1.47e-06 3.85e-06 1.64e-06 6.33e-06 1.13e-06 1.28e-06 2.28e-06 4.86e-06 3.34e-06 1.82e-06 5.26e-06 1.72e-06 2.15e-06 1.74e-06 2.83e-06 3.08e-06 1.99e-06 4.56e-07 5.52e-07 1.77e-06 2.1e-06 5.42e-07 9.05e-07 4.93e-07 1.2e-06 3.23e-07 4.51e-07 5.76e-06 2.45e-06 1.99e-07 3.44e-07 3.52e-07 8.55e-07 1.41e-07 1.6e-07