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Genes within 1Mb (chr1:30741973:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -554815 sc-eQTL 3.06e-02 -0.164 0.0754 0.391 B L1
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 7.85e-01 -0.0167 0.0611 0.391 B L1
ENSG00000134644 PUM1 -324018 sc-eQTL 1.18e-01 0.0799 0.051 0.391 B L1
ENSG00000162510 MATN1 18388 sc-eQTL 1.75e-01 0.0731 0.0537 0.391 B L1
ENSG00000162511 LAPTM5 -15801 sc-eQTL 8.87e-01 0.00602 0.0422 0.391 B L1
ENSG00000162517 PEF1 -902923 sc-eQTL 6.58e-02 0.117 0.0632 0.391 B L1
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 7.17e-02 -0.0888 0.0491 0.391 B L1
ENSG00000287510 AL137857.1 10280 sc-eQTL 9.93e-02 -0.0963 0.0582 0.391 B L1
ENSG00000060688 SNRNP40 -554815 sc-eQTL 9.81e-01 0.00159 0.0669 0.391 CD4T L1
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 3.22e-01 -0.0518 0.0522 0.391 CD4T L1
ENSG00000134644 PUM1 -324018 sc-eQTL 4.31e-01 -0.0367 0.0465 0.391 CD4T L1
ENSG00000162511 LAPTM5 -15801 sc-eQTL 2.94e-02 -0.112 0.051 0.391 CD4T L1
ENSG00000162517 PEF1 -902923 sc-eQTL 8.27e-01 -0.0118 0.0539 0.391 CD4T L1
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 2.20e-01 -0.0565 0.046 0.391 CD4T L1
ENSG00000287510 AL137857.1 10280 sc-eQTL 9.07e-01 0.00644 0.0553 0.391 CD4T L1
ENSG00000060688 SNRNP40 -554815 sc-eQTL 3.54e-01 0.0821 0.0885 0.391 CD8T L1
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 4.01e-01 -0.0496 0.0589 0.391 CD8T L1
ENSG00000134644 PUM1 -324018 sc-eQTL 5.17e-02 -0.101 0.0515 0.391 CD8T L1
ENSG00000162511 LAPTM5 -15801 sc-eQTL 1.41e-01 -0.0741 0.0502 0.391 CD8T L1
ENSG00000162517 PEF1 -902923 sc-eQTL 3.40e-01 -0.0593 0.062 0.391 CD8T L1
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 8.92e-01 0.00805 0.0591 0.391 CD8T L1
ENSG00000287510 AL137857.1 10280 sc-eQTL 9.45e-01 -0.00512 0.0743 0.391 CD8T L1
ENSG00000060688 SNRNP40 -554815 sc-eQTL 7.87e-01 0.0209 0.0772 0.383 DC L1
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 6.50e-02 0.168 0.0907 0.383 DC L1
ENSG00000134644 PUM1 -324018 sc-eQTL 2.98e-01 0.0745 0.0715 0.383 DC L1
ENSG00000162511 LAPTM5 -15801 sc-eQTL 7.19e-01 -0.0184 0.0511 0.383 DC L1
ENSG00000162517 PEF1 -902923 sc-eQTL 5.66e-01 -0.0477 0.0829 0.383 DC L1
ENSG00000168528 SERINC2 -667592 sc-eQTL 6.77e-01 -0.0352 0.0843 0.383 DC L1
ENSG00000284543 LINC01226 -764253 sc-eQTL 3.52e-01 -0.052 0.0558 0.383 DC L1
ENSG00000287510 AL137857.1 10280 sc-eQTL 5.95e-01 0.0431 0.0809 0.383 DC L1
ENSG00000060688 SNRNP40 -554815 sc-eQTL 2.00e-01 -0.0762 0.0593 0.391 Mono L1
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 7.13e-01 0.0272 0.0738 0.391 Mono L1
ENSG00000134644 PUM1 -324018 sc-eQTL 2.80e-01 -0.0511 0.0472 0.391 Mono L1
ENSG00000162511 LAPTM5 -15801 sc-eQTL 2.28e-01 0.0525 0.0434 0.391 Mono L1
ENSG00000162512 SDC3 -166785 sc-eQTL 9.59e-01 0.00427 0.0836 0.391 Mono L1
ENSG00000162517 PEF1 -902923 sc-eQTL 3.98e-01 0.0496 0.0586 0.391 Mono L1
ENSG00000168528 SERINC2 -667592 sc-eQTL 6.74e-01 -0.0378 0.0897 0.391 Mono L1
ENSG00000284543 LINC01226 -764253 sc-eQTL 9.30e-01 -0.00692 0.079 0.391 Mono L1
ENSG00000287510 AL137857.1 10280 sc-eQTL 2.86e-01 0.0738 0.0689 0.391 Mono L1
ENSG00000060688 SNRNP40 -554815 sc-eQTL 5.57e-02 -0.161 0.0834 0.393 NK L1
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 4.40e-01 0.0445 0.0575 0.393 NK L1
ENSG00000134644 PUM1 -324018 sc-eQTL 9.54e-02 0.101 0.06 0.393 NK L1
ENSG00000162511 LAPTM5 -15801 sc-eQTL 1.89e-03 -0.214 0.068 0.393 NK L1
ENSG00000162517 PEF1 -902923 sc-eQTL 3.12e-01 -0.0513 0.0507 0.393 NK L1
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 4.80e-01 -0.0552 0.0781 0.393 NK L1
ENSG00000287510 AL137857.1 10280 sc-eQTL 2.10e-01 -0.0905 0.0719 0.393 NK L1
ENSG00000060688 SNRNP40 -554815 sc-eQTL 2.20e-01 -0.0774 0.0629 0.391 Other_T L1
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 6.84e-01 -0.0275 0.0675 0.391 Other_T L1
ENSG00000134644 PUM1 -324018 sc-eQTL 3.93e-01 0.0518 0.0606 0.391 Other_T L1
ENSG00000162511 LAPTM5 -15801 sc-eQTL 2.94e-01 -0.0522 0.0496 0.391 Other_T L1
ENSG00000162517 PEF1 -902923 sc-eQTL 6.12e-01 0.0338 0.0664 0.391 Other_T L1
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 2.70e-01 -0.0898 0.0812 0.391 Other_T L1
ENSG00000287510 AL137857.1 10280 sc-eQTL 1.03e-01 0.138 0.0843 0.391 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -554815 sc-eQTL 3.34e-01 0.096 0.0991 0.39 B_Activated L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 7.74e-01 -0.0289 0.1 0.39 B_Activated L2
ENSG00000134644 PUM1 -324018 sc-eQTL 3.49e-01 0.0873 0.0929 0.39 B_Activated L2
ENSG00000162510 MATN1 18388 sc-eQTL 6.19e-01 -0.0405 0.0814 0.39 B_Activated L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 9.53e-01 -0.00334 0.0568 0.39 B_Activated L2
ENSG00000162517 PEF1 -902923 sc-eQTL 2.00e-01 0.124 0.0962 0.39 B_Activated L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 1.88e-01 -0.121 0.0912 0.39 B_Activated L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 2.36e-01 0.0961 0.0808 0.39 B_Activated L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 7.14e-01 0.0339 0.0925 0.391 B_Intermediate L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 5.77e-01 -0.043 0.077 0.391 B_Intermediate L2
ENSG00000134644 PUM1 -324018 sc-eQTL 9.35e-01 0.00596 0.0727 0.391 B_Intermediate L2
ENSG00000162510 MATN1 18388 sc-eQTL 2.30e-01 0.0908 0.0754 0.391 B_Intermediate L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 4.59e-01 -0.0344 0.0464 0.391 B_Intermediate L2
ENSG00000162517 PEF1 -902923 sc-eQTL 3.51e-01 0.0804 0.0861 0.391 B_Intermediate L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 1.06e-02 -0.165 0.0642 0.391 B_Intermediate L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 3.59e-01 -0.0669 0.0728 0.391 B_Intermediate L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 2.26e-01 -0.109 0.0896 0.392 B_Memory L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 1.60e-01 0.116 0.0825 0.392 B_Memory L2
ENSG00000134644 PUM1 -324018 sc-eQTL 2.64e-01 0.0806 0.0719 0.392 B_Memory L2
ENSG00000162510 MATN1 18388 sc-eQTL 8.15e-01 -0.0162 0.069 0.392 B_Memory L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 7.13e-01 0.0225 0.0611 0.392 B_Memory L2
ENSG00000162517 PEF1 -902923 sc-eQTL 7.85e-01 -0.0223 0.0817 0.392 B_Memory L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 9.86e-01 0.00121 0.07 0.392 B_Memory L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 7.52e-01 -0.026 0.082 0.392 B_Memory L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 4.91e-04 -0.287 0.0811 0.391 B_Naive1 L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 2.46e-01 -0.0836 0.0718 0.391 B_Naive1 L2
ENSG00000134644 PUM1 -324018 sc-eQTL 8.01e-01 -0.016 0.0635 0.391 B_Naive1 L2
ENSG00000162510 MATN1 18388 sc-eQTL 1.89e-01 0.0846 0.0642 0.391 B_Naive1 L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 9.94e-01 -0.000323 0.0431 0.391 B_Naive1 L2
ENSG00000162517 PEF1 -902923 sc-eQTL 3.50e-01 0.071 0.0758 0.391 B_Naive1 L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 2.11e-01 -0.0707 0.0564 0.391 B_Naive1 L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 6.79e-02 -0.127 0.0693 0.391 B_Naive1 L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 6.60e-01 0.0389 0.0883 0.393 B_Naive2 L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 5.40e-01 0.0447 0.0728 0.393 B_Naive2 L2
ENSG00000134644 PUM1 -324018 sc-eQTL 1.33e-01 0.107 0.0709 0.393 B_Naive2 L2
ENSG00000162510 MATN1 18388 sc-eQTL 2.81e-01 0.0738 0.0683 0.393 B_Naive2 L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 6.67e-01 0.02 0.0465 0.393 B_Naive2 L2
ENSG00000162517 PEF1 -902923 sc-eQTL 5.66e-01 0.0486 0.0845 0.393 B_Naive2 L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 2.48e-01 -0.0782 0.0675 0.393 B_Naive2 L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 3.50e-01 -0.0683 0.073 0.393 B_Naive2 L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 2.85e-01 -0.0953 0.089 0.389 CD4_CTL L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 9.17e-01 -0.00916 0.0878 0.389 CD4_CTL L2
ENSG00000134644 PUM1 -324018 sc-eQTL 2.74e-01 -0.094 0.0858 0.389 CD4_CTL L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 7.83e-02 -0.135 0.0761 0.389 CD4_CTL L2
ENSG00000162517 PEF1 -902923 sc-eQTL 8.85e-01 -0.0113 0.0786 0.389 CD4_CTL L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 5.24e-01 -0.0535 0.0838 0.389 CD4_CTL L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 9.45e-01 -0.00514 0.0741 0.389 CD4_CTL L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 2.18e-01 0.0854 0.0691 0.391 CD4_Naive L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 4.44e-01 -0.0471 0.0614 0.391 CD4_Naive L2
ENSG00000134644 PUM1 -324018 sc-eQTL 7.49e-01 -0.0157 0.0491 0.391 CD4_Naive L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 1.57e-02 -0.126 0.0519 0.391 CD4_Naive L2
ENSG00000162517 PEF1 -902923 sc-eQTL 9.23e-01 0.00554 0.0577 0.391 CD4_Naive L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 5.18e-01 -0.0345 0.0533 0.391 CD4_Naive L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 8.05e-01 -0.0152 0.0613 0.391 CD4_Naive L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 7.24e-01 -0.0309 0.0874 0.391 CD4_TCM L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 2.28e-01 -0.0849 0.0702 0.391 CD4_TCM L2
ENSG00000134644 PUM1 -324018 sc-eQTL 4.16e-01 -0.0508 0.0623 0.391 CD4_TCM L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 4.31e-02 -0.104 0.0513 0.391 CD4_TCM L2
ENSG00000162517 PEF1 -902923 sc-eQTL 9.06e-01 0.0082 0.0694 0.391 CD4_TCM L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 4.27e-01 -0.0522 0.0656 0.391 CD4_TCM L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 3.15e-01 0.0735 0.073 0.391 CD4_TCM L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 5.27e-01 -0.0564 0.0891 0.391 CD4_TEM L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 4.72e-01 -0.0612 0.0849 0.391 CD4_TEM L2
ENSG00000134644 PUM1 -324018 sc-eQTL 2.23e-01 -0.0862 0.0706 0.391 CD4_TEM L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 1.38e-02 -0.175 0.0706 0.391 CD4_TEM L2
ENSG00000162517 PEF1 -902923 sc-eQTL 2.71e-01 -0.0883 0.08 0.391 CD4_TEM L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 2.23e-01 -0.102 0.0835 0.391 CD4_TEM L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 8.19e-01 0.0189 0.0826 0.391 CD4_TEM L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 7.97e-02 0.166 0.0941 0.391 CD8_CTL L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 6.87e-01 -0.0294 0.0727 0.391 CD8_CTL L2
ENSG00000134644 PUM1 -324018 sc-eQTL 1.09e-01 -0.113 0.0702 0.391 CD8_CTL L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 5.67e-01 -0.0447 0.0781 0.391 CD8_CTL L2
ENSG00000162517 PEF1 -902923 sc-eQTL 6.99e-01 -0.0263 0.0681 0.391 CD8_CTL L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 9.59e-01 -0.00419 0.0822 0.391 CD8_CTL L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 6.67e-01 0.0333 0.0773 0.391 CD8_CTL L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 6.87e-01 0.0351 0.0869 0.391 CD8_Naive L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 8.80e-01 -0.0114 0.075 0.391 CD8_Naive L2
ENSG00000134644 PUM1 -324018 sc-eQTL 8.20e-02 -0.105 0.0599 0.391 CD8_Naive L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 5.55e-03 -0.159 0.0568 0.391 CD8_Naive L2
ENSG00000162517 PEF1 -902923 sc-eQTL 4.85e-01 -0.0562 0.0803 0.391 CD8_Naive L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 8.26e-01 -0.0159 0.0722 0.391 CD8_Naive L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 4.40e-01 0.0607 0.0785 0.391 CD8_Naive L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 6.27e-01 -0.047 0.0966 0.387 CD8_TCM L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 5.07e-01 -0.0588 0.0885 0.387 CD8_TCM L2
ENSG00000134644 PUM1 -324018 sc-eQTL 2.06e-01 -0.105 0.0829 0.387 CD8_TCM L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 2.04e-01 -0.111 0.0868 0.387 CD8_TCM L2
ENSG00000162517 PEF1 -902923 sc-eQTL 8.34e-01 -0.0187 0.0891 0.387 CD8_TCM L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 1.84e-01 0.107 0.0803 0.387 CD8_TCM L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 2.53e-01 -0.0931 0.0813 0.387 CD8_TCM L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 1.58e-01 -0.131 0.0925 0.386 CD8_TEM L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 7.16e-01 0.0325 0.0891 0.386 CD8_TEM L2
ENSG00000134644 PUM1 -324018 sc-eQTL 9.19e-01 0.00929 0.0911 0.386 CD8_TEM L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 6.61e-01 0.0376 0.0856 0.386 CD8_TEM L2
ENSG00000162517 PEF1 -902923 sc-eQTL 2.81e-01 0.087 0.0804 0.386 CD8_TEM L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 4.16e-01 0.0723 0.0888 0.386 CD8_TEM L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 9.15e-01 0.00856 0.0805 0.386 CD8_TEM L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 6.96e-01 -0.0365 0.0933 0.39 MAIT L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 2.72e-01 -0.0908 0.0824 0.39 MAIT L2
ENSG00000134644 PUM1 -324018 sc-eQTL 7.61e-01 0.0241 0.0792 0.39 MAIT L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 2.77e-02 -0.164 0.0739 0.39 MAIT L2
ENSG00000162517 PEF1 -902923 sc-eQTL 4.34e-01 0.0644 0.082 0.39 MAIT L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 2.68e-01 -0.0921 0.083 0.39 MAIT L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 6.68e-02 0.157 0.0851 0.39 MAIT L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 4.80e-02 -0.184 0.0927 0.389 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 4.26e-01 -0.063 0.079 0.389 NK_CD56bright L2
ENSG00000134644 PUM1 -324018 sc-eQTL 5.43e-01 0.0505 0.083 0.389 NK_CD56bright L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 8.60e-03 -0.214 0.0805 0.389 NK_CD56bright L2
ENSG00000162517 PEF1 -902923 sc-eQTL 6.35e-01 0.0378 0.0796 0.389 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 3.60e-01 0.0754 0.0822 0.389 NK_CD56bright L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 5.47e-01 0.0489 0.0811 0.389 NK_CD56bright L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 9.12e-01 0.00987 0.0897 0.392 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 3.28e-01 0.0649 0.0662 0.392 NK_CD56dim L2
ENSG00000134644 PUM1 -324018 sc-eQTL 2.38e-01 0.0802 0.0678 0.392 NK_CD56dim L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 6.69e-02 -0.133 0.072 0.392 NK_CD56dim L2
ENSG00000162517 PEF1 -902923 sc-eQTL 1.81e-01 -0.0863 0.0643 0.392 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 8.02e-01 -0.0228 0.0909 0.392 NK_CD56dim L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 2.34e-01 -0.0892 0.0747 0.392 NK_CD56dim L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 8.93e-01 -0.0129 0.0959 0.395 NK_HLA L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 6.99e-01 -0.0332 0.0856 0.395 NK_HLA L2
ENSG00000134644 PUM1 -324018 sc-eQTL 2.62e-03 0.249 0.0816 0.395 NK_HLA L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 2.81e-02 -0.174 0.0787 0.395 NK_HLA L2
ENSG00000162517 PEF1 -902923 sc-eQTL 9.93e-01 0.000792 0.0898 0.395 NK_HLA L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 8.12e-01 0.0202 0.0847 0.395 NK_HLA L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 4.83e-02 -0.161 0.0811 0.395 NK_HLA L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 5.12e-03 -0.238 0.0841 0.392 NK_cytokine L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 2.42e-01 0.0782 0.0667 0.392 NK_cytokine L2
ENSG00000134644 PUM1 -324018 sc-eQTL 5.37e-01 -0.0447 0.0723 0.392 NK_cytokine L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 3.79e-02 -0.165 0.0788 0.392 NK_cytokine L2
ENSG00000162517 PEF1 -902923 sc-eQTL 4.58e-01 -0.0503 0.0678 0.392 NK_cytokine L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 3.98e-01 -0.0714 0.0843 0.392 NK_cytokine L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 6.94e-01 -0.0309 0.0785 0.392 NK_cytokine L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 9.26e-01 0.00914 0.0986 0.389 PB L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 5.07e-01 -0.0761 0.114 0.389 PB L2
ENSG00000134644 PUM1 -324018 sc-eQTL 6.87e-01 0.0402 0.0993 0.389 PB L2
ENSG00000162510 MATN1 18388 sc-eQTL 6.28e-01 -0.045 0.0926 0.389 PB L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 6.49e-01 -0.0302 0.0661 0.389 PB L2
ENSG00000162517 PEF1 -902923 sc-eQTL 5.84e-01 -0.0558 0.102 0.389 PB L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 5.26e-02 -0.174 0.0891 0.389 PB L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 4.25e-01 -0.077 0.0962 0.389 PB L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 7.64e-01 -0.0205 0.0682 0.389 Pro_T L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 3.09e-01 0.088 0.0863 0.389 Pro_T L2
ENSG00000134644 PUM1 -324018 sc-eQTL 9.44e-01 -0.00573 0.0807 0.389 Pro_T L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 4.10e-01 0.0477 0.0578 0.389 Pro_T L2
ENSG00000162517 PEF1 -902923 sc-eQTL 1.29e-01 0.129 0.0845 0.389 Pro_T L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 4.06e-01 -0.0673 0.0808 0.389 Pro_T L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 7.62e-01 0.0226 0.0744 0.389 Pro_T L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 8.62e-01 -0.0157 0.0902 0.391 Treg L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 9.28e-01 -0.00791 0.0872 0.391 Treg L2
ENSG00000134644 PUM1 -324018 sc-eQTL 7.82e-01 -0.0194 0.0698 0.391 Treg L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 1.26e-02 -0.198 0.0788 0.391 Treg L2
ENSG00000162517 PEF1 -902923 sc-eQTL 5.35e-01 -0.0537 0.0863 0.391 Treg L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 8.48e-01 0.0156 0.0815 0.391 Treg L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 3.55e-01 -0.0752 0.0812 0.391 Treg L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 6.97e-01 0.0356 0.0914 0.38 cDC L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 8.49e-01 -0.0188 0.099 0.38 cDC L2
ENSG00000134644 PUM1 -324018 sc-eQTL 7.51e-01 0.027 0.085 0.38 cDC L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 7.19e-01 -0.0215 0.0596 0.38 cDC L2
ENSG00000162517 PEF1 -902923 sc-eQTL 4.02e-01 -0.0724 0.0861 0.38 cDC L2
ENSG00000168528 SERINC2 -667592 sc-eQTL 9.02e-01 0.00941 0.0765 0.38 cDC L2
ENSG00000284543 LINC01226 -764253 sc-eQTL 5.98e-01 -0.0397 0.0751 0.38 cDC L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 5.15e-01 0.0528 0.0808 0.38 cDC L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 1.78e-01 -0.0957 0.0708 0.391 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 7.35e-01 -0.0269 0.0793 0.391 cMono_IL1B L2
ENSG00000134644 PUM1 -324018 sc-eQTL 7.13e-01 -0.0198 0.0536 0.391 cMono_IL1B L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 3.69e-01 0.0423 0.047 0.391 cMono_IL1B L2
ENSG00000162512 SDC3 -166785 sc-eQTL 3.76e-01 -0.0786 0.0886 0.391 cMono_IL1B L2
ENSG00000162517 PEF1 -902923 sc-eQTL 8.72e-01 0.0117 0.0725 0.391 cMono_IL1B L2
ENSG00000168528 SERINC2 -667592 sc-eQTL 7.98e-01 -0.023 0.0898 0.391 cMono_IL1B L2
ENSG00000284543 LINC01226 -764253 sc-eQTL 4.93e-01 0.0544 0.0793 0.391 cMono_IL1B L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 7.89e-02 0.13 0.0735 0.391 cMono_IL1B L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 9.70e-01 0.00279 0.075 0.391 cMono_S100A L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 9.46e-01 0.00601 0.0886 0.391 cMono_S100A L2
ENSG00000134644 PUM1 -324018 sc-eQTL 5.72e-01 -0.0362 0.064 0.391 cMono_S100A L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 1.50e-01 0.0707 0.049 0.391 cMono_S100A L2
ENSG00000162512 SDC3 -166785 sc-eQTL 5.14e-01 -0.0555 0.0849 0.391 cMono_S100A L2
ENSG00000162517 PEF1 -902923 sc-eQTL 5.91e-02 0.144 0.0761 0.391 cMono_S100A L2
ENSG00000168528 SERINC2 -667592 sc-eQTL 8.86e-01 -0.0129 0.09 0.391 cMono_S100A L2
ENSG00000284543 LINC01226 -764253 sc-eQTL 3.42e-01 0.0695 0.073 0.391 cMono_S100A L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 3.96e-01 0.0624 0.0733 0.391 cMono_S100A L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 7.97e-01 -0.0297 0.115 0.391 gdT L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 1.93e-01 -0.128 0.0981 0.391 gdT L2
ENSG00000134644 PUM1 -324018 sc-eQTL 8.14e-01 0.024 0.102 0.391 gdT L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 7.48e-01 0.0356 0.111 0.391 gdT L2
ENSG00000162517 PEF1 -902923 sc-eQTL 3.21e-01 -0.1 0.101 0.391 gdT L2
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 7.95e-01 0.0266 0.102 0.391 gdT L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 4.65e-02 0.196 0.0975 0.391 gdT L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 1.42e-01 -0.123 0.0835 0.384 intMono L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 1.56e-01 0.128 0.0898 0.384 intMono L2
ENSG00000134644 PUM1 -324018 sc-eQTL 5.73e-01 0.0432 0.0765 0.384 intMono L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 8.67e-01 -0.0101 0.06 0.384 intMono L2
ENSG00000162512 SDC3 -166785 sc-eQTL 8.83e-01 0.0121 0.0822 0.384 intMono L2
ENSG00000162517 PEF1 -902923 sc-eQTL 9.25e-01 0.00812 0.0864 0.384 intMono L2
ENSG00000168528 SERINC2 -667592 sc-eQTL 1.84e-01 -0.114 0.0857 0.384 intMono L2
ENSG00000284543 LINC01226 -764253 sc-eQTL 1.83e-01 -0.109 0.0812 0.384 intMono L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 7.30e-01 -0.0281 0.0816 0.384 intMono L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 5.11e-01 -0.0531 0.0807 0.389 ncMono L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 3.34e-01 -0.0832 0.0859 0.389 ncMono L2
ENSG00000134644 PUM1 -324018 sc-eQTL 5.95e-01 -0.0375 0.0703 0.389 ncMono L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 6.79e-01 -0.0264 0.0639 0.389 ncMono L2
ENSG00000162512 SDC3 -166785 sc-eQTL 1.95e-01 0.0928 0.0714 0.389 ncMono L2
ENSG00000162517 PEF1 -902923 sc-eQTL 1.13e-01 -0.13 0.0816 0.389 ncMono L2
ENSG00000168528 SERINC2 -667592 sc-eQTL 4.46e-01 -0.0596 0.0781 0.389 ncMono L2
ENSG00000284543 LINC01226 -764253 sc-eQTL 3.71e-01 -0.0698 0.078 0.389 ncMono L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 9.77e-01 0.00235 0.081 0.389 ncMono L2
ENSG00000060688 SNRNP40 -554815 sc-eQTL 3.50e-01 -0.0875 0.0933 0.379 pDC L2
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 2.79e-01 0.111 0.102 0.379 pDC L2
ENSG00000134644 PUM1 -324018 sc-eQTL 7.94e-01 -0.0223 0.0852 0.379 pDC L2
ENSG00000162511 LAPTM5 -15801 sc-eQTL 9.97e-01 -0.000339 0.0792 0.379 pDC L2
ENSG00000162517 PEF1 -902923 sc-eQTL 2.07e-01 -0.129 0.102 0.379 pDC L2
ENSG00000168528 SERINC2 -667592 sc-eQTL 7.67e-01 0.0285 0.096 0.379 pDC L2
ENSG00000284543 LINC01226 -764253 sc-eQTL 8.29e-01 0.0161 0.0745 0.379 pDC L2
ENSG00000287510 AL137857.1 10280 sc-eQTL 8.72e-01 -0.0142 0.0877 0.379 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -554815 sc-eQTL 4.86e-01 -0.0616 0.0883 0.391 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 9.10e-01 0.00834 0.0736 0.391 B_Memory LOneK1K
ENSG00000134644 PUM1 -324018 sc-eQTL 2.17e-01 0.0805 0.065 0.391 B_Memory LOneK1K
ENSG00000162510 MATN1 18388 sc-eQTL 3.83e-01 0.0648 0.0742 0.391 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -15801 sc-eQTL 6.27e-01 -0.0227 0.0467 0.391 B_Memory LOneK1K
ENSG00000162517 PEF1 -902923 sc-eQTL 1.40e-01 0.114 0.077 0.391 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 1.36e-02 -0.152 0.0609 0.391 B_Memory LOneK1K
ENSG00000287510 AL137857.1 10280 sc-eQTL 2.73e-01 -0.0738 0.0671 0.391 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -554815 sc-eQTL 1.80e-02 -0.191 0.0801 0.391 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 7.30e-01 -0.0222 0.0642 0.391 B_Naive LOneK1K
ENSG00000134644 PUM1 -324018 sc-eQTL 2.13e-01 0.0756 0.0605 0.391 B_Naive LOneK1K
ENSG00000162510 MATN1 18388 sc-eQTL 2.34e-01 0.0696 0.0583 0.391 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -15801 sc-eQTL 9.32e-01 -0.0035 0.0412 0.391 B_Naive LOneK1K
ENSG00000162517 PEF1 -902923 sc-eQTL 1.25e-01 0.115 0.0748 0.391 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 1.83e-01 -0.0707 0.053 0.391 B_Naive LOneK1K
ENSG00000287510 AL137857.1 10280 sc-eQTL 6.49e-02 -0.116 0.0627 0.391 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -554815 sc-eQTL 3.00e-01 -0.0703 0.0676 0.391 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 8.67e-01 -0.0128 0.0767 0.391 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -324018 sc-eQTL 3.65e-01 -0.0443 0.0489 0.391 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -15801 sc-eQTL 1.85e-01 0.0569 0.0429 0.391 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -166785 sc-eQTL 3.28e-01 -0.0858 0.0876 0.391 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -902923 sc-eQTL 1.36e-01 0.092 0.0614 0.391 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -667592 sc-eQTL 8.48e-01 -0.0173 0.0903 0.391 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -764253 sc-eQTL 5.44e-01 0.045 0.074 0.391 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 10280 sc-eQTL 8.39e-02 0.12 0.0688 0.391 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -554815 sc-eQTL 6.56e-02 -0.139 0.0753 0.39 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 5.03e-01 0.0556 0.083 0.39 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -324018 sc-eQTL 8.04e-01 0.0169 0.068 0.39 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -15801 sc-eQTL 5.36e-01 0.0337 0.0544 0.39 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -166785 sc-eQTL 1.74e-01 0.108 0.0791 0.39 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -902923 sc-eQTL 4.54e-01 -0.0542 0.0721 0.39 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -667592 sc-eQTL 1.64e-01 -0.115 0.0821 0.39 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -764253 sc-eQTL 2.15e-01 -0.0969 0.078 0.39 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 10280 sc-eQTL 7.47e-01 -0.0253 0.0783 0.39 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -554815 sc-eQTL 9.75e-02 -0.14 0.0843 0.392 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -555009 sc-eQTL 5.78e-01 0.0323 0.0579 0.392 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -324018 sc-eQTL 3.09e-01 0.0646 0.0633 0.392 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -15801 sc-eQTL 3.86e-03 -0.203 0.0695 0.392 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -902923 sc-eQTL 4.61e-01 -0.0398 0.0538 0.392 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 23469 sc-eQTL 4.99e-01 -0.0554 0.0817 0.392 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 10280 sc-eQTL 1.69e-01 -0.097 0.0703 0.392 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134644 PUM1 -324018 eQTL 0.00342 -0.0432 0.0147 0.0 0.00106 0.381
ENSG00000162511 LAPTM5 -15801 eQTL 0.00176 0.0326 0.0104 0.0 0.0 0.381

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -15801 0.000138 5.68e-05 8.06e-06 1.88e-05 7.7e-06 2.55e-05 6.51e-05 5.69e-06 5.05e-05 1.89e-05 5.89e-05 2.48e-05 8.81e-05 2.01e-05 8.74e-06 3.2e-05 2.53e-05 4.44e-05 1.07e-05 8.3e-06 2.48e-05 5.71e-05 5.2e-05 1.13e-05 7.03e-05 1.37e-05 2.14e-05 1.61e-05 6.26e-05 3.16e-05 3.02e-05 1.64e-06 2.53e-06 7.73e-06 1.54e-05 7.67e-06 3.1e-06 3.17e-06 5.77e-06 3.19e-06 1.66e-06 6.97e-05 6.88e-06 3.6e-07 3.13e-06 5.27e-06 5.63e-06 1.98e-06 1.52e-06