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Genes within 1Mb (chr1:30738008:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -558780 sc-eQTL 4.01e-01 -0.0769 0.0913 0.748 B L1
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 5.07e-01 -0.0486 0.0732 0.748 B L1
ENSG00000134644 PUM1 -327983 sc-eQTL 3.05e-02 0.132 0.0608 0.748 B L1
ENSG00000162510 MATN1 14423 sc-eQTL 4.87e-01 -0.045 0.0645 0.748 B L1
ENSG00000162511 LAPTM5 -19766 sc-eQTL 4.78e-01 0.036 0.0505 0.748 B L1
ENSG00000162517 PEF1 -906888 sc-eQTL 6.78e-01 -0.0317 0.0763 0.748 B L1
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 7.01e-01 -0.0227 0.0593 0.748 B L1
ENSG00000287510 AL137857.1 6315 sc-eQTL 2.90e-01 0.0742 0.07 0.748 B L1
ENSG00000060688 SNRNP40 -558780 sc-eQTL 7.08e-01 0.0292 0.0781 0.748 CD4T L1
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 5.71e-01 -0.0346 0.061 0.748 CD4T L1
ENSG00000134644 PUM1 -327983 sc-eQTL 3.75e-01 -0.0482 0.0542 0.748 CD4T L1
ENSG00000162511 LAPTM5 -19766 sc-eQTL 8.65e-01 0.0102 0.0602 0.748 CD4T L1
ENSG00000162517 PEF1 -906888 sc-eQTL 7.25e-01 0.0222 0.0629 0.748 CD4T L1
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 6.77e-01 0.0225 0.0538 0.748 CD4T L1
ENSG00000287510 AL137857.1 6315 sc-eQTL 8.60e-02 -0.11 0.064 0.748 CD4T L1
ENSG00000060688 SNRNP40 -558780 sc-eQTL 4.32e-01 -0.0808 0.103 0.748 CD8T L1
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 1.07e-01 -0.11 0.0679 0.748 CD8T L1
ENSG00000134644 PUM1 -327983 sc-eQTL 3.97e-01 -0.051 0.0601 0.748 CD8T L1
ENSG00000162511 LAPTM5 -19766 sc-eQTL 9.15e-01 -0.00625 0.0585 0.748 CD8T L1
ENSG00000162517 PEF1 -906888 sc-eQTL 3.27e-01 -0.0706 0.0718 0.748 CD8T L1
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 1.21e-01 0.106 0.0681 0.748 CD8T L1
ENSG00000287510 AL137857.1 6315 sc-eQTL 4.85e-01 -0.0602 0.086 0.748 CD8T L1
ENSG00000060688 SNRNP40 -558780 sc-eQTL 7.69e-01 -0.0271 0.0922 0.743 DC L1
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 7.53e-01 -0.0343 0.109 0.743 DC L1
ENSG00000134644 PUM1 -327983 sc-eQTL 3.15e-01 0.0858 0.0853 0.743 DC L1
ENSG00000162511 LAPTM5 -19766 sc-eQTL 1.18e-01 0.0954 0.0607 0.743 DC L1
ENSG00000162517 PEF1 -906888 sc-eQTL 4.46e-01 -0.0755 0.0988 0.743 DC L1
ENSG00000168528 SERINC2 -671557 sc-eQTL 6.26e-01 -0.0491 0.101 0.743 DC L1
ENSG00000284543 LINC01226 -768218 sc-eQTL 8.48e-01 -0.0128 0.0667 0.743 DC L1
ENSG00000287510 AL137857.1 6315 sc-eQTL 5.14e-01 -0.063 0.0964 0.743 DC L1
ENSG00000060688 SNRNP40 -558780 sc-eQTL 6.58e-01 0.032 0.0722 0.748 Mono L1
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 9.83e-01 0.00194 0.0896 0.748 Mono L1
ENSG00000134644 PUM1 -327983 sc-eQTL 1.61e-01 0.0804 0.0572 0.748 Mono L1
ENSG00000162511 LAPTM5 -19766 sc-eQTL 1.19e-01 0.0823 0.0525 0.748 Mono L1
ENSG00000162512 SDC3 -170750 sc-eQTL 5.50e-01 -0.0607 0.101 0.748 Mono L1
ENSG00000162517 PEF1 -906888 sc-eQTL 9.37e-03 -0.184 0.0701 0.748 Mono L1
ENSG00000168528 SERINC2 -671557 sc-eQTL 1.45e-01 -0.158 0.108 0.748 Mono L1
ENSG00000284543 LINC01226 -768218 sc-eQTL 5.24e-01 0.0612 0.0959 0.748 Mono L1
ENSG00000287510 AL137857.1 6315 sc-eQTL 4.25e-01 0.0669 0.0838 0.748 Mono L1
ENSG00000060688 SNRNP40 -558780 sc-eQTL 4.64e-01 -0.0724 0.0987 0.749 NK L1
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 8.69e-01 0.0112 0.0677 0.749 NK L1
ENSG00000134644 PUM1 -327983 sc-eQTL 8.01e-02 0.124 0.0705 0.749 NK L1
ENSG00000162511 LAPTM5 -19766 sc-eQTL 4.42e-02 -0.164 0.0809 0.749 NK L1
ENSG00000162517 PEF1 -906888 sc-eQTL 3.05e-01 -0.0611 0.0595 0.749 NK L1
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 5.34e-01 0.0571 0.0917 0.749 NK L1
ENSG00000287510 AL137857.1 6315 sc-eQTL 2.66e-01 -0.0943 0.0845 0.749 NK L1
ENSG00000060688 SNRNP40 -558780 sc-eQTL 1.75e-01 -0.1 0.0737 0.748 Other_T L1
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 9.55e-01 -0.00448 0.0791 0.748 Other_T L1
ENSG00000134644 PUM1 -327983 sc-eQTL 1.01e-01 -0.116 0.0707 0.748 Other_T L1
ENSG00000162511 LAPTM5 -19766 sc-eQTL 4.75e-01 0.0417 0.0582 0.748 Other_T L1
ENSG00000162517 PEF1 -906888 sc-eQTL 5.07e-01 0.0517 0.0778 0.748 Other_T L1
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 7.70e-01 0.028 0.0955 0.748 Other_T L1
ENSG00000287510 AL137857.1 6315 sc-eQTL 5.47e-01 -0.06 0.0994 0.748 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -558780 sc-eQTL 5.29e-03 0.326 0.115 0.75 B_Activated L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 2.76e-02 0.261 0.117 0.75 B_Activated L2
ENSG00000134644 PUM1 -327983 sc-eQTL 8.23e-01 0.0248 0.111 0.75 B_Activated L2
ENSG00000162510 MATN1 14423 sc-eQTL 2.30e-01 -0.116 0.0963 0.75 B_Activated L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 3.04e-01 0.0694 0.0672 0.75 B_Activated L2
ENSG00000162517 PEF1 -906888 sc-eQTL 3.83e-01 0.1 0.115 0.75 B_Activated L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 7.75e-01 0.0312 0.109 0.75 B_Activated L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 6.12e-01 0.0489 0.0963 0.75 B_Activated L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 4.65e-01 0.0819 0.112 0.747 B_Intermediate L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 4.64e-01 -0.0684 0.0932 0.747 B_Intermediate L2
ENSG00000134644 PUM1 -327983 sc-eQTL 2.16e-01 0.109 0.0877 0.747 B_Intermediate L2
ENSG00000162510 MATN1 14423 sc-eQTL 3.58e-01 0.0842 0.0914 0.747 B_Intermediate L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 8.56e-01 0.0102 0.0562 0.747 B_Intermediate L2
ENSG00000162517 PEF1 -906888 sc-eQTL 6.72e-01 -0.0442 0.104 0.747 B_Intermediate L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 5.59e-01 -0.0462 0.0788 0.747 B_Intermediate L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 9.29e-01 -0.00792 0.0883 0.747 B_Intermediate L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 5.60e-01 0.0627 0.107 0.75 B_Memory L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 9.32e-01 0.00845 0.099 0.75 B_Memory L2
ENSG00000134644 PUM1 -327983 sc-eQTL 7.35e-01 0.0292 0.0861 0.75 B_Memory L2
ENSG00000162510 MATN1 14423 sc-eQTL 9.92e-01 0.000844 0.0824 0.75 B_Memory L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 1.39e-01 0.108 0.0727 0.75 B_Memory L2
ENSG00000162517 PEF1 -906888 sc-eQTL 3.22e-01 -0.0965 0.0973 0.75 B_Memory L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 1.02e-01 0.136 0.0831 0.75 B_Memory L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 5.80e-01 0.0543 0.0978 0.75 B_Memory L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 8.34e-01 -0.0208 0.0991 0.748 B_Naive1 L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 7.11e-01 0.0317 0.0855 0.748 B_Naive1 L2
ENSG00000134644 PUM1 -327983 sc-eQTL 7.81e-01 -0.021 0.0755 0.748 B_Naive1 L2
ENSG00000162510 MATN1 14423 sc-eQTL 3.79e-01 -0.0674 0.0765 0.748 B_Naive1 L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 5.03e-01 0.0343 0.0511 0.748 B_Naive1 L2
ENSG00000162517 PEF1 -906888 sc-eQTL 2.73e-01 -0.0989 0.0899 0.748 B_Naive1 L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 7.59e-01 -0.0206 0.0672 0.748 B_Naive1 L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 1.62e-01 0.116 0.0826 0.748 B_Naive1 L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 2.92e-01 -0.111 0.105 0.749 B_Naive2 L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 3.46e-02 -0.182 0.0858 0.749 B_Naive2 L2
ENSG00000134644 PUM1 -327983 sc-eQTL 3.41e-01 0.0808 0.0847 0.749 B_Naive2 L2
ENSG00000162510 MATN1 14423 sc-eQTL 5.94e-01 -0.0434 0.0814 0.749 B_Naive2 L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 1.38e-01 0.0819 0.055 0.749 B_Naive2 L2
ENSG00000162517 PEF1 -906888 sc-eQTL 3.81e-01 -0.0881 0.1 0.749 B_Naive2 L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 7.94e-01 -0.021 0.0805 0.749 B_Naive2 L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 1.28e-01 -0.132 0.0865 0.749 B_Naive2 L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 4.55e-01 -0.0777 0.104 0.743 CD4_CTL L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 7.88e-01 0.0276 0.102 0.743 CD4_CTL L2
ENSG00000134644 PUM1 -327983 sc-eQTL 4.15e-01 -0.0818 0.1 0.743 CD4_CTL L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 1.32e-01 -0.135 0.0889 0.743 CD4_CTL L2
ENSG00000162517 PEF1 -906888 sc-eQTL 3.01e-01 -0.0948 0.0914 0.743 CD4_CTL L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 1.97e-01 0.126 0.0974 0.743 CD4_CTL L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 4.46e-01 -0.0657 0.0861 0.743 CD4_CTL L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 5.42e-01 0.0497 0.0815 0.748 CD4_Naive L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 4.04e-01 -0.0603 0.0722 0.748 CD4_Naive L2
ENSG00000134644 PUM1 -327983 sc-eQTL 3.19e-01 -0.0575 0.0576 0.748 CD4_Naive L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 7.65e-01 0.0185 0.0618 0.748 CD4_Naive L2
ENSG00000162517 PEF1 -906888 sc-eQTL 4.39e-01 0.0525 0.0677 0.748 CD4_Naive L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 9.00e-01 0.00789 0.0628 0.748 CD4_Naive L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 4.95e-01 0.0492 0.072 0.748 CD4_Naive L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 6.03e-01 0.0533 0.102 0.748 CD4_TCM L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 6.37e-01 0.0389 0.0825 0.748 CD4_TCM L2
ENSG00000134644 PUM1 -327983 sc-eQTL 8.03e-01 0.0183 0.073 0.748 CD4_TCM L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 5.98e-01 -0.032 0.0606 0.748 CD4_TCM L2
ENSG00000162517 PEF1 -906888 sc-eQTL 3.09e-01 0.0827 0.081 0.748 CD4_TCM L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 6.62e-01 0.0337 0.0769 0.748 CD4_TCM L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 3.87e-03 -0.245 0.084 0.748 CD4_TCM L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 9.26e-01 -0.00944 0.102 0.748 CD4_TEM L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 6.14e-01 0.049 0.0971 0.748 CD4_TEM L2
ENSG00000134644 PUM1 -327983 sc-eQTL 8.95e-01 -0.0107 0.0809 0.748 CD4_TEM L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 2.86e-01 -0.0873 0.0817 0.748 CD4_TEM L2
ENSG00000162517 PEF1 -906888 sc-eQTL 1.28e-01 -0.139 0.0912 0.748 CD4_TEM L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 8.03e-01 -0.0239 0.0958 0.748 CD4_TEM L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 8.47e-01 0.0182 0.0944 0.748 CD4_TEM L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 8.24e-01 -0.0251 0.112 0.748 CD8_CTL L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 1.46e-02 -0.209 0.0849 0.748 CD8_CTL L2
ENSG00000134644 PUM1 -327983 sc-eQTL 2.92e-01 0.0881 0.0834 0.748 CD8_CTL L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 6.66e-02 -0.169 0.0919 0.748 CD8_CTL L2
ENSG00000162517 PEF1 -906888 sc-eQTL 1.52e-01 -0.115 0.0803 0.748 CD8_CTL L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 7.61e-01 0.0296 0.0973 0.748 CD8_CTL L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 6.73e-01 -0.0387 0.0915 0.748 CD8_CTL L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 7.35e-01 0.0344 0.102 0.748 CD8_Naive L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 7.29e-01 -0.0304 0.0876 0.748 CD8_Naive L2
ENSG00000134644 PUM1 -327983 sc-eQTL 4.26e-01 -0.0562 0.0704 0.748 CD8_Naive L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 7.51e-01 0.0215 0.0676 0.748 CD8_Naive L2
ENSG00000162517 PEF1 -906888 sc-eQTL 5.00e-01 0.0634 0.0938 0.748 CD8_Naive L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 8.09e-02 0.147 0.0838 0.748 CD8_Naive L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 2.23e-01 0.112 0.0915 0.748 CD8_Naive L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 2.66e-01 -0.125 0.112 0.743 CD8_TCM L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 9.44e-01 -0.00731 0.103 0.743 CD8_TCM L2
ENSG00000134644 PUM1 -327983 sc-eQTL 1.41e-01 -0.143 0.0964 0.743 CD8_TCM L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 9.85e-01 -0.00193 0.102 0.743 CD8_TCM L2
ENSG00000162517 PEF1 -906888 sc-eQTL 3.01e-01 -0.107 0.103 0.743 CD8_TCM L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 6.88e-02 0.17 0.0932 0.743 CD8_TCM L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 8.86e-01 0.0137 0.095 0.743 CD8_TCM L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 2.63e-02 -0.238 0.106 0.744 CD8_TEM L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 9.04e-01 -0.0124 0.103 0.744 CD8_TEM L2
ENSG00000134644 PUM1 -327983 sc-eQTL 5.55e-01 -0.0622 0.105 0.744 CD8_TEM L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 9.03e-01 -0.0121 0.099 0.744 CD8_TEM L2
ENSG00000162517 PEF1 -906888 sc-eQTL 7.81e-01 0.0259 0.0932 0.744 CD8_TEM L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 1.53e-01 -0.147 0.102 0.744 CD8_TEM L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 2.05e-01 -0.118 0.0926 0.744 CD8_TEM L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 9.63e-01 0.00495 0.108 0.749 MAIT L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 5.78e-01 0.0532 0.0955 0.749 MAIT L2
ENSG00000134644 PUM1 -327983 sc-eQTL 5.11e-01 -0.0602 0.0915 0.749 MAIT L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 4.67e-01 -0.063 0.0863 0.749 MAIT L2
ENSG00000162517 PEF1 -906888 sc-eQTL 4.23e-01 0.0761 0.0948 0.749 MAIT L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 6.16e-01 0.0483 0.0962 0.749 MAIT L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 7.67e-01 -0.0294 0.0992 0.749 MAIT L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 7.80e-01 0.0313 0.112 0.747 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 2.46e-02 -0.211 0.0933 0.747 NK_CD56bright L2
ENSG00000134644 PUM1 -327983 sc-eQTL 4.13e-01 0.0812 0.099 0.747 NK_CD56bright L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 2.59e-01 -0.111 0.0975 0.747 NK_CD56bright L2
ENSG00000162517 PEF1 -906888 sc-eQTL 8.52e-01 0.0178 0.095 0.747 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 4.39e-01 -0.0762 0.0982 0.747 NK_CD56bright L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 2.77e-01 0.105 0.0966 0.747 NK_CD56bright L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 4.98e-01 -0.0704 0.104 0.75 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 6.14e-01 -0.0387 0.0767 0.75 NK_CD56dim L2
ENSG00000134644 PUM1 -327983 sc-eQTL 5.22e-01 0.0505 0.0787 0.75 NK_CD56dim L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 6.64e-02 -0.154 0.0833 0.75 NK_CD56dim L2
ENSG00000162517 PEF1 -906888 sc-eQTL 8.87e-01 -0.0107 0.0747 0.75 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 2.16e-01 0.13 0.105 0.75 NK_CD56dim L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 8.16e-01 -0.0202 0.0868 0.75 NK_CD56dim L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 9.20e-01 -0.0113 0.112 0.753 NK_HLA L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 3.73e-01 0.089 0.0997 0.753 NK_HLA L2
ENSG00000134644 PUM1 -327983 sc-eQTL 6.47e-03 0.263 0.0955 0.753 NK_HLA L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 7.70e-02 -0.164 0.0922 0.753 NK_HLA L2
ENSG00000162517 PEF1 -906888 sc-eQTL 8.33e-01 -0.0222 0.105 0.753 NK_HLA L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 6.94e-01 0.0389 0.0988 0.753 NK_HLA L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 5.72e-02 -0.181 0.0947 0.753 NK_HLA L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 4.67e-01 -0.075 0.103 0.75 NK_cytokine L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 2.66e-01 0.0894 0.0801 0.75 NK_cytokine L2
ENSG00000134644 PUM1 -327983 sc-eQTL 7.20e-01 -0.0312 0.0868 0.75 NK_cytokine L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 5.03e-02 -0.186 0.0947 0.75 NK_cytokine L2
ENSG00000162517 PEF1 -906888 sc-eQTL 1.64e-01 -0.113 0.0811 0.75 NK_cytokine L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 8.41e-01 -0.0204 0.101 0.75 NK_cytokine L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 9.21e-01 0.00941 0.0943 0.75 NK_cytokine L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 3.50e-01 0.113 0.12 0.752 PB L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 7.57e-01 -0.0433 0.14 0.752 PB L2
ENSG00000134644 PUM1 -327983 sc-eQTL 7.33e-01 0.0415 0.121 0.752 PB L2
ENSG00000162510 MATN1 14423 sc-eQTL 8.56e-01 0.0206 0.113 0.752 PB L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 8.92e-01 -0.011 0.0809 0.752 PB L2
ENSG00000162517 PEF1 -906888 sc-eQTL 3.01e-02 -0.268 0.122 0.752 PB L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 4.23e-01 0.0888 0.11 0.752 PB L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 5.90e-01 0.0636 0.118 0.752 PB L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 9.18e-02 -0.137 0.0806 0.746 Pro_T L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 5.43e-01 -0.0628 0.103 0.746 Pro_T L2
ENSG00000134644 PUM1 -327983 sc-eQTL 1.06e-01 -0.155 0.0955 0.746 Pro_T L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 8.78e-01 0.0106 0.069 0.746 Pro_T L2
ENSG00000162517 PEF1 -906888 sc-eQTL 2.38e-01 0.119 0.101 0.746 Pro_T L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 3.40e-01 -0.0919 0.0962 0.746 Pro_T L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 7.22e-01 -0.0315 0.0886 0.746 Pro_T L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 3.23e-01 0.103 0.104 0.748 Treg L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 4.19e-01 -0.0815 0.101 0.748 Treg L2
ENSG00000134644 PUM1 -327983 sc-eQTL 2.99e-01 -0.0837 0.0804 0.748 Treg L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 9.06e-02 -0.156 0.0917 0.748 Treg L2
ENSG00000162517 PEF1 -906888 sc-eQTL 9.79e-01 0.00262 0.0997 0.748 Treg L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 1.47e-01 0.136 0.0936 0.748 Treg L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 1.83e-01 -0.125 0.0936 0.748 Treg L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 6.50e-01 -0.048 0.106 0.741 cDC L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 3.77e-01 -0.101 0.114 0.741 cDC L2
ENSG00000134644 PUM1 -327983 sc-eQTL 7.25e-01 0.0347 0.0982 0.741 cDC L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 3.23e-01 0.0681 0.0687 0.741 cDC L2
ENSG00000162517 PEF1 -906888 sc-eQTL 3.58e-01 -0.0917 0.0995 0.741 cDC L2
ENSG00000168528 SERINC2 -671557 sc-eQTL 6.31e-01 -0.0425 0.0884 0.741 cDC L2
ENSG00000284543 LINC01226 -768218 sc-eQTL 1.10e-01 0.139 0.0863 0.741 cDC L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 1.91e-01 -0.122 0.0931 0.741 cDC L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 3.26e-01 0.0843 0.0857 0.748 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 5.79e-01 -0.0532 0.0957 0.748 cMono_IL1B L2
ENSG00000134644 PUM1 -327983 sc-eQTL 1.89e-01 0.085 0.0646 0.748 cMono_IL1B L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 2.17e-01 0.0701 0.0567 0.748 cMono_IL1B L2
ENSG00000162512 SDC3 -170750 sc-eQTL 6.15e-02 -0.2 0.106 0.748 cMono_IL1B L2
ENSG00000162517 PEF1 -906888 sc-eQTL 1.86e-02 -0.205 0.0864 0.748 cMono_IL1B L2
ENSG00000168528 SERINC2 -671557 sc-eQTL 1.96e-01 -0.14 0.108 0.748 cMono_IL1B L2
ENSG00000284543 LINC01226 -768218 sc-eQTL 4.39e-01 0.0742 0.0958 0.748 cMono_IL1B L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 3.96e-01 0.0759 0.0893 0.748 cMono_IL1B L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 2.45e-01 0.105 0.0901 0.748 cMono_S100A L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 3.34e-01 0.103 0.107 0.748 cMono_S100A L2
ENSG00000134644 PUM1 -327983 sc-eQTL 5.68e-01 0.0441 0.0771 0.748 cMono_S100A L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 4.74e-02 0.117 0.0588 0.748 cMono_S100A L2
ENSG00000162512 SDC3 -170750 sc-eQTL 5.56e-01 0.0604 0.102 0.748 cMono_S100A L2
ENSG00000162517 PEF1 -906888 sc-eQTL 7.76e-01 -0.0264 0.0925 0.748 cMono_S100A L2
ENSG00000168528 SERINC2 -671557 sc-eQTL 5.28e-01 -0.0685 0.108 0.748 cMono_S100A L2
ENSG00000284543 LINC01226 -768218 sc-eQTL 5.47e-01 0.0531 0.088 0.748 cMono_S100A L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 3.92e-01 0.0757 0.0883 0.748 cMono_S100A L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 7.83e-02 -0.237 0.134 0.739 gdT L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 6.91e-02 -0.21 0.115 0.739 gdT L2
ENSG00000134644 PUM1 -327983 sc-eQTL 4.12e-01 -0.0983 0.12 0.739 gdT L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 5.73e-01 0.0736 0.13 0.739 gdT L2
ENSG00000162517 PEF1 -906888 sc-eQTL 5.90e-01 -0.0642 0.119 0.739 gdT L2
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 6.50e-01 0.0546 0.12 0.739 gdT L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 9.05e-01 0.0139 0.116 0.739 gdT L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 6.95e-02 -0.18 0.0988 0.747 intMono L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 4.60e-01 -0.0792 0.107 0.747 intMono L2
ENSG00000134644 PUM1 -327983 sc-eQTL 2.47e-01 0.105 0.0905 0.747 intMono L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 8.80e-02 0.121 0.0708 0.747 intMono L2
ENSG00000162512 SDC3 -170750 sc-eQTL 2.82e-01 -0.105 0.0973 0.747 intMono L2
ENSG00000162517 PEF1 -906888 sc-eQTL 2.25e-01 -0.124 0.102 0.747 intMono L2
ENSG00000168528 SERINC2 -671557 sc-eQTL 3.21e-03 -0.298 0.1 0.747 intMono L2
ENSG00000284543 LINC01226 -768218 sc-eQTL 7.44e-01 -0.0317 0.0968 0.747 intMono L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 5.14e-01 0.0632 0.0967 0.747 intMono L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 2.97e-01 0.0969 0.0927 0.753 ncMono L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 9.70e-01 0.00379 0.0991 0.753 ncMono L2
ENSG00000134644 PUM1 -327983 sc-eQTL 2.82e-01 0.0871 0.0807 0.753 ncMono L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 4.68e-01 0.0534 0.0734 0.753 ncMono L2
ENSG00000162512 SDC3 -170750 sc-eQTL 2.84e-01 0.0883 0.0822 0.753 ncMono L2
ENSG00000162517 PEF1 -906888 sc-eQTL 7.21e-01 -0.0338 0.0945 0.753 ncMono L2
ENSG00000168528 SERINC2 -671557 sc-eQTL 1.76e-01 -0.122 0.0896 0.753 ncMono L2
ENSG00000284543 LINC01226 -768218 sc-eQTL 4.88e-01 0.0624 0.0898 0.753 ncMono L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 1.34e-01 -0.139 0.0927 0.753 ncMono L2
ENSG00000060688 SNRNP40 -558780 sc-eQTL 8.63e-01 -0.0181 0.105 0.74 pDC L2
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 6.67e-01 -0.0495 0.115 0.74 pDC L2
ENSG00000134644 PUM1 -327983 sc-eQTL 4.83e-01 0.0669 0.0952 0.74 pDC L2
ENSG00000162511 LAPTM5 -19766 sc-eQTL 5.25e-01 0.0564 0.0885 0.74 pDC L2
ENSG00000162517 PEF1 -906888 sc-eQTL 7.42e-01 -0.038 0.115 0.74 pDC L2
ENSG00000168528 SERINC2 -671557 sc-eQTL 5.16e-01 -0.0698 0.107 0.74 pDC L2
ENSG00000284543 LINC01226 -768218 sc-eQTL 8.95e-01 -0.011 0.0834 0.74 pDC L2
ENSG00000287510 AL137857.1 6315 sc-eQTL 9.82e-01 0.00217 0.0982 0.74 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -558780 sc-eQTL 1.74e-01 0.145 0.106 0.748 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 8.42e-01 -0.0177 0.0888 0.748 B_Memory LOneK1K
ENSG00000134644 PUM1 -327983 sc-eQTL 1.60e-02 0.188 0.0776 0.748 B_Memory LOneK1K
ENSG00000162510 MATN1 14423 sc-eQTL 7.08e-01 0.0337 0.0897 0.748 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -19766 sc-eQTL 2.29e-01 0.0678 0.0562 0.748 B_Memory LOneK1K
ENSG00000162517 PEF1 -906888 sc-eQTL 9.50e-01 -0.00581 0.0934 0.748 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 6.92e-01 0.0296 0.0746 0.748 B_Memory LOneK1K
ENSG00000287510 AL137857.1 6315 sc-eQTL 6.15e-01 -0.0409 0.0812 0.748 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -558780 sc-eQTL 3.86e-01 -0.0845 0.0974 0.748 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 3.71e-01 -0.069 0.077 0.748 B_Naive LOneK1K
ENSG00000134644 PUM1 -327983 sc-eQTL 3.27e-01 0.0716 0.0728 0.748 B_Naive LOneK1K
ENSG00000162510 MATN1 14423 sc-eQTL 1.66e-01 -0.0973 0.0699 0.748 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -19766 sc-eQTL 4.00e-01 0.0416 0.0494 0.748 B_Naive LOneK1K
ENSG00000162517 PEF1 -906888 sc-eQTL 3.80e-01 -0.0793 0.0901 0.748 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 3.84e-01 -0.0556 0.0637 0.748 B_Naive LOneK1K
ENSG00000287510 AL137857.1 6315 sc-eQTL 3.25e-01 0.0747 0.0757 0.748 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -558780 sc-eQTL 3.81e-01 0.0716 0.0815 0.748 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 8.33e-01 0.0196 0.0925 0.748 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -327983 sc-eQTL 1.94e-01 0.0766 0.0588 0.748 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -19766 sc-eQTL 1.21e-01 0.0802 0.0516 0.748 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -170750 sc-eQTL 1.96e-01 -0.137 0.105 0.748 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -906888 sc-eQTL 6.67e-02 -0.136 0.0738 0.748 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -671557 sc-eQTL 2.81e-01 -0.117 0.109 0.748 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -768218 sc-eQTL 4.22e-01 0.0717 0.0891 0.748 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 6315 sc-eQTL 1.75e-01 0.113 0.0832 0.748 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -558780 sc-eQTL 6.17e-01 -0.045 0.09 0.748 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 4.86e-01 -0.0687 0.0984 0.748 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -327983 sc-eQTL 1.70e-01 0.111 0.0804 0.748 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -19766 sc-eQTL 1.30e-01 0.0977 0.0642 0.748 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -170750 sc-eQTL 8.47e-01 -0.0182 0.0943 0.748 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -906888 sc-eQTL 3.02e-01 -0.0884 0.0855 0.748 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -671557 sc-eQTL 5.32e-03 -0.27 0.096 0.748 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -768218 sc-eQTL 9.21e-01 0.00919 0.0928 0.748 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 6315 sc-eQTL 4.53e-01 -0.0698 0.0928 0.748 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -558780 sc-eQTL 2.98e-01 -0.103 0.0988 0.75 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -558974 sc-eQTL 6.58e-01 0.03 0.0677 0.75 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -327983 sc-eQTL 3.32e-01 0.072 0.074 0.75 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -19766 sc-eQTL 3.61e-02 -0.173 0.082 0.75 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -906888 sc-eQTL 4.63e-01 -0.0462 0.0629 0.75 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 19504 sc-eQTL 5.75e-01 0.0537 0.0955 0.75 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 6315 sc-eQTL 1.96e-01 -0.107 0.0822 0.75 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -19766 eQTL 0.0231 -0.0263 0.0116 0.0 0.0 0.237
ENSG00000168528 SERINC2 -671557 eQTL 0.0112 0.114 0.0447 0.0 0.0 0.237

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000237329 \N -298726 1.32e-06 3.55e-07 7.45e-08 4.29e-07 1.07e-07 3.22e-07 4.68e-07 6.12e-08 1.85e-07 1.03e-07 2.07e-07 1.31e-07 4.11e-07 9.15e-08 1.07e-07 1.46e-07 8.42e-08 3.58e-07 1.55e-07 8.25e-08 1.33e-07 2.3e-07 2.33e-07 4.81e-08 5.53e-07 1.76e-07 1.85e-07 1.44e-07 1.44e-07 1.89e-07 1.35e-07 7.12e-08 4.86e-08 1.17e-07 3.07e-07 2.68e-08 7.52e-08 8.17e-08 4.9e-08 5.12e-08 4.78e-08 3.43e-07 5.33e-08 1.05e-08 3.29e-08 9.86e-09 9.12e-08 2.13e-09 4.81e-08